RNA id: XM_043225627.1


Basic Information

Item Value
RNA id XM_043225627.1
length 2706
RNA type mRNA
GC content 0.46
exon number 13
gene id colgalt1a
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 9013095 ~ 9021646 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTAAAGAGCGCTCGCTGTACAATGCTCCGCTTCGTGTTGTCGGTGTCGGCGCTGTGGTCCTGTTTGATGAACTCCGACCAGCTGGAAGGATACTTCCACGAAGCGCGCTGGAGCCCGGAGTCTCCTATATTAGCTCGAGTAATGATCGCTCTCATCTGCCGTAACGCCCAGCACTCGCTGCCGCATTTCCTCGGTACTATCGAGCGCCTCGATTACCCTAAAGACCGGATCGCGCTGtgGGTGGCAACTGACCACAATATTGACAACACTACTTACCTGCTGCGAGACTGGCTCATCAATGTACAGAAACTATATCATAATGTGGAGTGGAGGCCCAAAGGAGGAACCAAGGTTTGCCACGTTTCTTCACTTGAGAGGACCGAAGGATTGACGAATGAGCGCTACGCCTACATCATGAAACTGCAGGCAGCGCTCGAGTCTGCACGTGAGATGTGGGCAGACTATCTGATGaTGATTGATTGTGATAACCTCCTGATCAACCGAGACGTCTTGTGGAAgctgataaaagaaaacaagacaattgTGGCACCAATGATGGAGTCTCGTGCTGCATATTCAAACTTCTGGTGTGGAATGACATCCCAGGGCTACTATAAACGAACGCCTGCCTACATCCCCATGCAAGCAAATGCGTGAGGTTGCTTTGCAGTTCCCATGGTGCACTCCACTTACCTGGTTGATCTGCGGAAAGAAGCCTCCAGAATGCTTGCTTTTCACCCGCCACATCCAGACTACACCTGGGCCTTTGACGACATTATAGTCTTTGCTTTTTCAGCCCGGATGGCAGAGGTacaaatgtttctttgtaaCAGGGAGATTTATGGGCACCTCCCAGTGCCTCTTCGAGCtcacagcaccatgcaggacgaAGCAGACAGCTTCATTCATACTTTGATGGAGGTCAATGTGCGAAATCCTCCAGTTGAGCCTTCCAGATACTTGCCCAAACCTGTCAAAAGACCTGACAAAATGGACTTTGATGAGGTGTTTATGATCAACCTGAAGCGGCGGGTCGACCGTCGTGAGCGCATGCTAAGGTCCCTGAGAGAGCAAGAAATTGCCTGCAAGATTATAGCAGCTGTTGATGGCAAAGCTATGAACGTCAGTGAGATCAATGCTATGGCAATCCACATGCTTCCCGGCTACAGTGACCCCTACCATGGCAGACCTCTGACAAGAGGAGAGCTGGGCTGCTTCCTGTCCCACTATAACATCTGGAAAGAGATTGCAGACAGAGGCCTGAAGACCTCGCTGGTGCTTGAAGATGATTTGCGGTTTGAGATTTTCTTCAAGCGCCGCCTGCAGAATCTGATGCGAGAGGTGGAGAGTAAGGGTCTGGACTGGGACCTCATttaTATTGGGAGGAAGAGGATGCAGGTGGACCGACCAGAGAAGGCAGTACCAAACATTCGCAACTTGGTGGAGGCGGACTATTCCTATTGGACCTTGGGCTACATGATGTCATTACAAGGAGCCAAAAAGCTCCTCAAAGCAGAACCACTCAGTAAAATGTTACCTGTGGACGAGTTCCTTCCTATTATGTTTAATAAGCATCCTGTATCGGATTACATGGATCAGTTTGAGACGAGGGACCTGAAAGCATTTTCAGCAGAGCCCTTGCTTGTGTTTCCTACACATTACACGGGTGAACCTGGGTACATCAGTGACACAGAAACCTCCACTGTGTGGGACAATGAGAAAGTGCGCACAGACTGGGACAGGAAGCGCTCGGGTAAAACCCGGGAACAGGCTGAAATCAGCACAGAGGCCCAAAACTCAGATGTGCTCCAGTCTCCTCTGGACAGAACAGCTCGAGACGAACTATGAGAGAAATTGTTTTGGACACACCATTAGACTTGCTTCTGGGGGCAAAGTCCTCCGCTCTATAAGCACAATATATCTGACCAGAAGAGGCATtttcagaattgtttttttttttatgtttgcctgaaaaaaatatatttttgcgtTTAATCATTTGTCCCTTTTATTTGGAGATCAAATTTGCCGGACTGGGCGCTTTCTGATCTGTTCTTCACTGTATCCTGTGATTTAAAAACACCAGGAACATTCCTGAATATCTTCTTAGGAGAGAAGTTAGCAGGTATACTAAATGTAAAGTTTGTAAGGATGTACTTAAGGGCAAGTCTTGAAAGATTCATATAGAattagttcacctaaaaataaaaaaaaatgactgaaaatgtactcaccctcaggccatccgtgATATAGAGGACTTTGTTCTTCACCAGAGccgatttggagaaattcaACATTATTTCACTtactcaccaatggatcctctgcagtgaaggggtgccgtcaggatgagagtCCCAaagagctgattaaaaacatcaattaacatcttgtgaagttaAAAGCTTTgggtttgtaagaaacaaatgcattattatggcattttaactttaaatcatGACTTCTGGCCACAATATGTGTTCATAATCCATAACGTCCTCCAGCCTTGTCTAAAACATGAGAATGTGCACAGATtagtatgaataataatatgttggtggattttgattAGAGAGGACGACAGGAGATGGATGTTTTCACTGGAGGAAACTTTATTATAGGGCTTATGTATTATGTCCAGAAGTGCCCTAATAATAGATCTGTTTATATGAATTACATAACGCATTAACTGATAGACTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27303 lncRNA upstream 917 9011693 ~ 9012178 (+) False pgls
TU27283 lncRNA upstream 24485 8987053 ~ 8988610 (+) False LOC122341292
TU27278 lncRNA upstream 130973 8881198 ~ 8882122 (+) True G18261
TU26937 lncRNA upstream 270793 8514149 ~ 8742302 (+) False G18048
TU27001 lncRNA upstream 337209 8671661 ~ 8675886 (+) True G18092
TU27339 lncRNA downstream 160894 9182540 ~ 9183276 (+) False brd4
TU27326 lncRNA downstream 162753 9184399 ~ 9185581 (+) True LOC122341719
TU27353 lncRNA downstream 228453 9250099 ~ 9250630 (+) True G18303
TU27355 lncRNA downstream 240324 9261970 ~ 9262239 (+) True G18305
TU27527 lncRNA downstream 391998 9413644 ~ 9414007 (+) True G18425
XM_043225635.1 mRNA upstream 980 9010050 ~ 9012115 (+) True pgls
XM_043234662.1 mRNA upstream 24285 8980591 ~ 8988810 (+) True LOC122341292
XM_043230932.1 mRNA upstream 33219 8976324 ~ 8979876 (+) True LOC122333359
XM_043235775.1 mRNA upstream 158330 8835129 ~ 8854765 (+) True LOC122342001
XM_043228383.1 mRNA upstream 304813 8704444 ~ 8708282 (+) True LOC122330982
XM_043234664.1 mRNA downstream 2732 9024378 ~ 9041533 (+) True LOC122341294
XM_043225839.1 mRNA downstream 21792 9043438 ~ 9064147 (+) True lmx1al
XM_043235532.1 mRNA downstream 46000 9067646 ~ 9083475 (+) True atp13a1
XM_043230019.1 mRNA downstream 62718 9084364 ~ 9089675 (+) False LOC122332643
XM_043230027.1 mRNA downstream 62861 9084507 ~ 9089675 (+) True LOC122332643
TU26907 other upstream 449719 8260084 ~ 8563376 (+) False LOC122342110
TU26987 other upstream 461944 8544460 ~ 8551151 (+) False LOC122331854
TU26936 other upstream 488361 8513349 ~ 8524734 (+) True G18048
TU26932 other upstream 496641 8513349 ~ 8516454 (+) False G18048
TU26858 other upstream 860270 8150770 ~ 8152825 (+) False LOC122341282
TU27323 other downstream 162882 9184528 ~ 9185660 (+) False LOC122341719
TU27325 other downstream 162882 9184528 ~ 9185581 (+) False LOC122341719
TU27599 other downstream 672986 9694632 ~ 9696559 (+) False aanat2
TU27611 other downstream 718150 9739796 ~ 9749880 (+) True G18491
TU27625 other downstream 777169 9798815 ~ 9799755 (+) True hbbe1.3

Expression Profile