RNA id: XM_043225743.1


Basic Information

Item Value
RNA id XM_043225743.1
length 4969
RNA type mRNA
GC content 0.48
exon number 3
gene id gjc1
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20201276 ~ 20229670 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCAGTGTTTAATAGTGAGCTGATGACCAGAAATCAGCTGTGTTTGATAAAGGAGACGTGCAGAATGTGCAGTGTTGGGGTGTCTTCAGGACCAACGTTAGAGCAATTGAGTCTTATGTCCAAAGAAAAGCACGCGCGAGAGCGAGCTCGCGCGCAAGTCAATCATCCTTCGCCTTTTGTGAGCGTCAGAAATTGCTCTGGTCAGTGAGCAGGCATCCGTCAGGCTTCCCCTTCAGTGTTAACGCGCGGTAGCGTCCCTCAGACAAGGTCGTGCACTTTCGCCTTTCCCCGTgacaaacaaccaaaaaaagtcGCGTGGATGAGCCGCGGCAGCAGTCATTGTGCCCCAGCCTCCCCACGAGAACGGAGACGCGGACACGGCTTGAAGTCGCAGTCATTTATTGTTGACAGATAGTAGGATGGCCGGTTCGCACGTGTTCGCTGTAACGGGCGACTTCGGGCGCGCGATTGAAAACGACACCGCAAGCGCGCGAGAACATCTCGCCAGGTAAACAGGGGCACGAGACCAACGAATTCCGCGGCGAGGTTTTTGAGCGTTTCTTCGCGAGGACTGCATTTAACCAGCCGGGTTTACGCACAGAGCGACAGATTTCGAGCGAACATCAACAGCACTCGCAATAAAACGGCATTTGTTACCGAGCAGCATGTTAAAACCGGACGATTTGAGTCGCGCTCTGAGGTCTCGTGAAGTCTTCAGCGGTGACGAGACGGAGGCGGAGGCGAGTCCGTTAACGGAGGACTTGGGCAGCGATTAAGACTCTGGGACCTTCCGTCATTTGACCGGGCATCCTTCTCCTTAAAATAATCATCACAGACTCGCGGAGCGGCAAGGCATGAATACTAAGGAAAAAGGAAAGATGGACAGAAGTAGAGGAAACAGGACAAGTGCCCTCAGACAAACAACCTTTAACTCAGcctttaaaaatagaaaatgagAGTCTGTGAGCTGTGCAGTGTGGGACGCTGTCTGCCCCGTTGTCATCAGACGTCATGAGCTGGAGCTTCCTGACGCGTCTGCTGGAGGAGATCCAGCACCACTCCACGTCGGTGGGGAAACTCTGGCTCACTGCGCTAGTTGTCTTCCGCATCGTGCTAACTGCGGTGGGAGGCGAGTCCATATACTACGACGAGCAGAGCAAGTTCGTCTGCAACTCGGGACAGCCAGGATGTGAGAACGTCTGCTACGATGCCTTCGCGCCGCTCTCGCATGTGCGGTTCTGGGTCTTCCAGATCATTCTGTCCGCCATGCCCTCTCTGCTCTATATGGGCTACGCGGCCAATAAGATCTCCCACAACGAGGATTTGAGGGGCGGCGGGGGGGCCGGGGCTCCACCCACAGGCGACTCTGTGGGGGGCGGATACACCCAGCGCAGGCCGAGAAAGATGTACTTTGGTGCACGGCAGCATCGGCCGGGACATGAGGACGGGGAGGAGGAACGCGAAGACGACCCCATGATCTACGAAGTGCCTGAGATAGACAACACACGTCGTGAGCTGGTGCCACCGCGTCCCAAACCCAAAGTGCGCCACGATGGCCGCCGGCGGATTCGAGACGATGGTCTGATGCGAGTGTATGTGTTGCAGCTGCTGACGCGCTCCGCCCTGGAGGCGGGCTTCCTGGCGGGACAGTACTTGTTATATGGCTTTCGAGTGGAACCAGTCTTTGTGTGCTCAGATAAACCCTGCCCGCACCATGTGGACTGCTTTATCTCACGCCCCACCGAAAAAACCATCTTCCTTCGAATCATGTACGGAGTCAGTTGCCTTTGCCTGCTGCTAAACCTGTGGGAAATGATTCACCTGGGAGTGGGAACTATTCGCGATGCGCTGCGCAAACGAACCGAATCGGCCACCGATGATGAGTACCAGCTTGGCCTGCTTGCGGCAGGGGGCGTGtcggtcggagtgggcgggcCTTCTCTCAGCGAGGGGGAACCAGGAGGTGGAGTTGGGGGCGGCGTGCGAGAGGCAGACTATGTTGGTTATCCCTTCTCCTGGAATACTCCCTCTGCGCCGCCGGGGTACAACATTGTGGTGAAGCCCGAGACGATGCCGTACACAGACCTGAGCAACGCCAAGATGGCGTGCAAGCAGAACCGTGCCAACATCGCCCAGGAGGAGCAGCAGCAGTACGGCTCCAATGAGGACAACTTCCCGTCTGCAGGTGAGGCCAGACCGCCTCCCATAAACAAAGACGTGATACAGTTAGAGGCGGCGATTCAAGCCTATACCTTGCAGCACCATGCCAGCAGTAACCACGACGAGATGAACGACACTAATGACATCGATGAGAAGCCTCAGAGCAACATCACCACCGCACCGCAGAAGGAGCGCAAGCAGCGGCCCAAGCACGGAAAGTCCGGGAGCgctgggagcagcagcagcagcaagtCTGGAGAAGGCAAGCCATCTGTCTGGATCTGACTGAACATTACACTCAGTGGTGCACACCATCTTCCCAGTTCTGCAAGTTTTTCTTTTAGGCACAAAATATTCTGTGCATCCCACAGATTACAATAACTGCAAACACGTGATTCGAAAAATGCTGTATATCTTTTTGAAGTGCTTTCGGGCGTGCCTTAAAGACTCTCTGTGAATGAGATGGGGTGGGGGGGGCTGTACTGTTTTTTTGATCTCCCGTTGAGCTCTGAGAACATTCCCTCATAATCCAGAAAAACCCATCCGTTTTCAAAGTTGGGAACTCTGCAGCAAGTTGAGAAAGTCTTCCGATCGGATTCTTCCATGAGAGCGATAATGCTACAATCCGATTCCAAACCAGCTGTCTTCCTTTTGCCAGTGTTAAACAGTAACTTTTGCAGCACGATGCCAAGCTATAACAATGCAATGATACACACCAATGCTGTGCTGGTACACTGTGGTCTTCAAGACCCAACAAACAGTCCTGTGAAATAAGCTGTAAatctacatttacaaacatacaaacacatccaGTGCAAATGTTTTCACCACTGTGGTTGTTTGAGGAAGCAGTGTCTTTCAGTTTTAGAGTTTCTCTTACTTCGAGATCTCTGTTGTATTTCTAGCCACCAAGATTTGGGATATTCCACTGATGGATCCACTATCCTACTCTGTTCTTGTACTATCCCCTACTGGTAAAGAAAGCTTTTGCAGTCTAGTCTTATTAgccatataaatacatacaggtTCCCCACGGTCCTGGAAATAACACtgaattttaaaagtgttatttccagaccagaaaaaaagaagaagaagaaattatttaaattaaaagaaaggtAAATTTATTTAAGTGCTCAGATTTTTTATTACCCTTTGTGAGTCCAGTAATTATGaatgatttttataaagaaatttaTCCAGTAATTAAATGGTGTATAAGGGGGAAAATTTTTAGAAATTTAAGTCTGGAAATCCTGTACTTTTAGATGCATTTTACATTCAAATGGACTTGTCTGATAGTCACTgtgttttgttaaaacaaaattgcTCTAACAAACCTGTATTCATGGGAACATCCTCTGGCTCTAACAGACTTGATATAGCCAGTCCAAGTAGCAGGTCTAACTTGGTTCAAATTGAGGTTGAAAGTTTAACAGTGACGCCTTTCAGGTCAATGCAATGTAGATATCTAAGGTACACGCAAACCAATTTATACACACTGTGTGAAGAGTCTTCCATTCTCTCTTACTGCCACATTCCAACTTTGTGAGACTTTTGCCTTTATGTAGGATGTTTCAATTTGTGACAATTGCCATGGGAGACCAAATACTGTTTGTCACAAAGACATCGAGCTACTATGCAGTCATGCGGACTGAGGAAAACACGCCATAGAACACCATTGTGTGTGCCTGCGTGTGTGCGCTTGCGTGTAGCAGAGGACGAGGCGGCGGGGAGTGATTGCATGAGTGCATGTGACTAGTAtttgattaatgaattaaaaaaaaaaccctttacaTATCAGCATTTCAGCAGTGTTTATTGATGCTGAAGATTGTGGCATTAGATTTGTGGTTTCTAAGCGAGACTTGACTTGTTTGTACTTTTCAACATCgatttggtttctttttttattagcttttttaataCGCAGAACTCAAATTCAACAGTGCCCGTAtgatttgatttattacaaaatgtttttttaggattttttagGATTTAATCAGCCTTTAAtcgtagtaaaaaaaaaacgatgtgCTGTATTTGTTAGTCGATCGGTGCAAATATGTTTCCCAGTGTGCTCAATGAATCCTTTTTTTCTTAGTCATGATCGAGTATAATTTTGCATGGGAGGGAACGCAGGAATGTTTGAGGGCAATTTCCAATGGAAAGCTCTAAGCGAAAAAGAAGTCCGCAATGTAACTACTTTGACCTTTTCTATGTGGATGTGTGGGGGTTTCTAACAGCTGTATAATAGAGTGCTCCAGATGGAGTGAGTATAAGAGACCCCTCTGCCCCACATCTGAGCACTACTGTGCGTGTTTGCGTTTAATGTGTGAGCGTTCACAGAGTCGGGGTTAGCCGAGGCGATCCTCAAGAAAAACCTCTCTCGTACTTTTGTCAGCTGTCTGAGGAAGAAACTGAAGTAGTAAGCTACTTTACTTCAGAGTTTGACACATCGCTTTGAAAGCAAGCCTTCTCAGCAGGTCACAATGAAGGCTGATGGCATTCTTACTGACGAGCGTGTGTGAATGTGGAAGCATGCGTTTCTATTTATTGCCCTTTCCTGGTTATCATCAAGCCACTAATGTGTTTGATAAGACGTTTGTTTGTCCTGACTGGTATGTGTTTCTGTAAATGTTGTCACTGTGTTTGAAAAacgagggagaaaaaaaatgcttttaatgtgcCAAGCTGGACTGTCCAGCGATGTACAATTATTTCCAATTTTGGAGAACCCTCTCTTTGGATTTGAAATTGCATGTTCAGAgctattttgttaataaaatgagaTCAATTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250526.1 lncRNA upstream 16607 20173694 ~ 20185526 (+) True LOC122342124
TU32179 lncRNA upstream 29131 20168636 ~ 20173002 (+) True G21652
XR_006250469.1 lncRNA upstream 40922 20160436 ~ 20161211 (+) True LOC122341550
TU32162 lncRNA upstream 40928 20160436 ~ 20161205 (+) False LOC122341550
TU32079 lncRNA upstream 136257 20064960 ~ 20065876 (+) False LOC122341338
TU32185 lncRNA downstream 345 20230015 ~ 20314144 (+) False G21655
TU32184 lncRNA downstream 83625 20313295 ~ 20314144 (+) True G21655
TU32192 lncRNA downstream 110221 20339891 ~ 20345356 (+) True G21660
TU32193 lncRNA downstream 111402 20341072 ~ 20342296 (+) True G21661
TU32202 lncRNA downstream 163891 20393561 ~ 20393901 (+) True G21669
XM_043235916.1 mRNA upstream 6412 20185535 ~ 20195721 (+) True eftud2
XM_043234692.1 mRNA upstream 41952 20148514 ~ 20160181 (+) True LOC122341342
XM_043234997.1 mRNA upstream 88635 20094851 ~ 20113498 (+) True LOC122341546
XM_043234691.1 mRNA upstream 120088 20077002 ~ 20082045 (+) True LOC122341340
XM_043234690.1 mRNA upstream 125132 20071944 ~ 20077001 (+) True LOC122341339
XM_043235298.1 mRNA downstream 18406 20248076 ~ 20251489 (+) True bckdhbl
XM_043235299.1 mRNA downstream 18409 20248079 ~ 20251489 (+) False bckdhbl
XM_043235196.1 mRNA downstream 25154 20254824 ~ 20284900 (+) True cacnb1
XM_043235202.1 mRNA downstream 25154 20254824 ~ 20282420 (+) False cacnb1
XM_043235203.1 mRNA downstream 25154 20254824 ~ 20281602 (+) False cacnb1
TU32181 other upstream 14050 20187528 ~ 20188083 (+) False eftud2
TU32173 other upstream 14935 20185567 ~ 20187198 (+) False eftud2
TU32169 other upstream 94297 20106846 ~ 20107836 (+) False LOC122341546
TU32077 other upstream 134132 20064490 ~ 20068001 (+) False LOC122341338
unassigned_transcript_291 other downstream 84590 20314260 ~ 20314331 (+) True trnac-gca_3
TU32806 other downstream 1066032 21295702 ~ 21414286 (+) True G22087
XR_006248723.1 other downstream 1408073 21637743 ~ 21734127 (+) False crhr1
TU33098 other downstream 1745582 21975252 ~ 21976665 (+) True G22301
XR_006248300.1 other downstream 1746839 21976509 ~ 22025911 (+) False wnk4b

Expression Profile