RNA id: XM_043225827.1


Basic Information

Item Value
RNA id XM_043225827.1
length 1990
RNA type mRNA
GC content 0.35
exon number 2
gene id LOC122329533
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11979763 ~ 11982000 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAAATGCTTTCATTTGAACAGAAACAGACAACGATCGAGCGCAGAGGCTAAACAGGTTAAAATGGCTGAGCTGAGAATTGTTTTGTTGGGTAAACAAGGAGCAGGAAAGAGCGCTTCAGGAAACACTCTTCTGCGTAGTCAGTCATTCCACACAGCGGCAGGCTCAGAGCGAGTCACTCGCACCTGTGTAATGGGTAGGTCCACTTTAGACGAGCAAGAAATCAAAGTGATTGACACTCCTGGGTGGTGTGATTCACCTCAGTTGGAGACTGACATCAAGCAGGAAATCATCAGATGCATTAGTATGTCCAGTCCTGGGCCACATGTGTTTCTGTTGGTGCTGCCCATCGGCAGATTTACCAATGAAGAGATAAATACGGTCATGAATATCATGAAGGAGTTTGGGGATGAAGTCAGCAAATACATGATCGTGCTATTCACCAAAGGAGATGATCTGGAGGAGAGGCCTATTGAAGACTACCTAAAAGAACTTCACTCAGATCTGAAAGCAATCATTCAGATTTACGGTGGAAGATATCACGTCTTTAACAACAGAGACAAAAGCAACCAGAAACAAGTCTCTTCTCTTCTGATGAAGATCAATAAGATGGTGGAGAGGAATGAGGAAAAATGTTACACAACAGCCATGTATCAAAAAGCGAAGGACCAAAAGAGTGATGAGGGCAGACAACAATGTAGGAGAGAAAAGGATAATTCAGTTCCAGACGAAAGCAAAAGTCACTCTACAAATCAAAATGGAGATAAGAGAAGCAGACACGATGGTATGAAAGGTAGAGAGCACAGAGGTATATCAGAGGCCGGAAAGGAGTGTTCACAGAAATGGAAAACGCAACAGCAAACCAGAGATACACAACACAGAGAGTGTGAAAGAATAAAGCAGTTCACAATGGAAGTAGAAAGTGAAAAATGGGAGAAAGGAGAAgaacagagaagaagagaaaagcCTGGAGAAGATGACAAAAGACAGAGGAGTTACGAGGTTGATGATGCCATTAGGAGATATGGAGAAGAAAATGGAGAAATATCAAgggaaataaaaacactaaaacatactataaaacagttaaatgaatcaataattaaaaatgatgctttaaagTGTATGTGGAGTAATGAGAGGGACaaattaataactaaaatacATGAACTGAAAACAGAGGTAATGATTAAGAATAATGAGCTTAAACAAGCAGAAATGAAGAATGAAGAattaaagcaacagtttaaaGAACAAACTGAGATGTTTGAGAAGATGGAAAAATTATGGGCTCAGCAAAAAACacaagatgaaaaaacaaaatcacatgcTTTCTTCGATTTTTttcaaagtttatttaatttaaaatgacccATATTACTATCACCATAGTGTTTGCAATGTTTAACATGATCATTACAAACATCATGtgatatcaaaataatatatccacatatatgcataattcAACCCAGAGGCATTTAAGGTACCGAATTTTGATTGAAATGCACTTTTCTGTTATTCTCTTCTAACTCAGATTCAGACTTtgtataagaaatgtttcataaGCAGAGTAGTTtgagaaattaatgtttatggcacaatgttttattatgtatttcaCTAAGCAATGTGCATGATCCGCACATCAGTAAAGTTTGTCATGATTATTGTTGAAACAAAATATCCTATTCATTTAGGAATTACACTGTTCTTGTAAtacattaatgatttttttaatatatatataattgatgcctatttttgttatatatatttttttactatttctgTTCCAAGAGTTTTTACAAGGGACTATTTTCccttatttgaacaaaaatcatatcaaaatatataatgcgGATGCATATGTAATGCATATAATGTTCTTACGTTATGTGcaagtcatttatttctaaacTTTATATGTGTTGTGCTGTTTTGTGTGTAATGTAACTATTACGTACACAATAAAGGGATATTAAAAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28622 lncRNA upstream 5797 11967648 ~ 11974006 (+) True G19208
TU28625 lncRNA upstream 86147 11891903 ~ 11893656 (+) False syt5a
XR_006249757.1 lncRNA upstream 144550 11834772 ~ 11835253 (+) True LOC122338225
TU28582 lncRNA upstream 260224 11712609 ~ 11719579 (+) False G19184
TU28679 lncRNA downstream 60884 12042884 ~ 12049422 (+) False prr12b
TU28685 lncRNA downstream 90719 12072719 ~ 12073073 (+) True G19255
TU28687 lncRNA downstream 92231 12074231 ~ 12074503 (+) True G19257
TU28697 lncRNA downstream 135343 12117343 ~ 12117909 (+) False pax10
TU28698 lncRNA downstream 136538 12118538 ~ 12118775 (+) True G19263
XM_043228260.1 mRNA upstream 745 11976888 ~ 11979058 (+) True prl
XM_043235435.1 mRNA upstream 86561 11885655 ~ 11893242 (+) True syt5a
XM_043235436.1 mRNA upstream 86561 11885655 ~ 11893242 (+) False syt5a
XM_043233684.1 mRNA upstream 94804 11883609 ~ 11884999 (+) True LOC122336110
XM_043233688.1 mRNA upstream 98916 11878982 ~ 11880887 (+) False LOC122336152
XM_043230846.1 mRNA downstream 2546 11984546 ~ 11986105 (+) True LOC122333296
XM_043228732.1 mRNA downstream 13095 11995095 ~ 12013540 (+) True ap2a1
XM_043228740.1 mRNA downstream 13095 11995095 ~ 12013540 (+) False ap2a1
XM_043228750.1 mRNA downstream 13095 11995095 ~ 12013540 (+) False ap2a1
XM_043228760.1 mRNA downstream 33005 12015005 ~ 12018012 (+) True si:ch211-195b15.8
XR_006249731.1 other upstream 145879 11773201 ~ 11833924 (+) True kcnc3a
XR_006249728.1 other upstream 145879 11773201 ~ 11833924 (+) False kcnc3a
XR_006249729.1 other upstream 145879 11773201 ~ 11833924 (+) False kcnc3a
TU28236 other upstream 610051 11368893 ~ 11369752 (+) True G18949
TU28257 other upstream 643978 11333759 ~ 11335825 (+) True LOC122331261
TU28690 other downstream 110603 12092603 ~ 12100852 (+) True LOC122342134
XR_006249244.1 other downstream 321364 12303364 ~ 12312990 (+) False nbr1b
TU28786 other downstream 529926 12511926 ~ 12513721 (+) False G19326
TU28787 other downstream 529926 12511926 ~ 12513721 (+) False G19326
XR_006250478.1 other downstream 537837 12519837 ~ 12528803 (+) False gtpbp1

Expression Profile