RNA id: XM_043225909.1


Basic Information

Item Value
RNA id XM_043225909.1
length 6480
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC122329583
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12661681 ~ 12676663 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAGGGTCAGCATGTGACGTCACGCGGTCGTACAGTTTTCCCTGTAGATTCAGACACATAGATGTTTATGACCTGAAGCAGGTTTTGGCCTTGTTCACGGTGCGGGCAAACTTACATGGATTTTACGAGCATACAATTTCTCTGGTGGTGCTGGCCATAGCGCCATGGCTCAGACCCTTCAGATGGCGATCCCAAACTTCGGCAACAATGTCCTGGAGTGTTTGAACGAGCAGCGGCTGCAGGGGCTGTACTGCGACGTGTCCGTGGTGGTGAAAGGCCACACCTTTAAAGCCCACCGCGCCGTGCTGGCGGCCAGCAGCTCCTACTTCCGTGACCTTTTCAACAGCAGTGCGGGCAGCAaaacccctacagtggtggagTTGCCGCCGGCCGTACAGCCGCAGAGCTTTCAGCAGATCCTGGCCTTCTGCTACACCGGCCGCCTCAGCATGAACGTCGGAGACCAGTTCCTGCTCATGTACACGGCCGGCTTCCTCCAGATCCAGCAGATAATGGAAAAGGGCACGGAGTTCTTCTTGAAGGTCAGCTCGCCCAGCTGCGACTCGCAGGGCCTCCATACTGAAGAAACCCCTCCGTCGGAGCCTCAGAGCCCTGTTACCCAGACGGCGGCGGGTGCTGCGGCTAACGGTGGAGGCGGGGTGGTGGCTACGGCGGCCAGTCGACCCGCTTCCTGCTTGACCCCCTTGCCCCTTGTCTCTCGGGTGAAGACGGAGCAGCCAGAGGCCTCGCCGTATTCAGTGGTTTGCACGCCAGTGGccaagcggctctgggaaggagGCAATCGAGAAGGCGGCGGAGGCTCGGGGGCGGCCGGTGGAGGAGGGATGAGGAAGGCGGCTCGCTTTTCCCAAGAAATGGCACGAGGAAGCGCCATTCAGCAGCAAGGTAGCATGGGACTTGGTATGGGTCTTGGAATGGGCACAGGGGGTCATGGTGGAGGAGGAAGCACCAATGGCAATGGCAACGGCACAAGCAGTGCCACCCCTGAAGGCACCAGCCCTGGTACTTTGAGTGCCTACGCCAGTGATTCGCCCATCTCTTACCACgatgatgaggaagaggaagaggcgGTGGATGACGGCACTGAAGAGCAGTACAGGCAGATCTGCAACATGTACACCATGTATAGCATGCTCAACGTGGGTGCTACAGCAGGCGAGCGTGTGGAGGCCTTGCCGGACCACTCGGAGACCCGACCCAGGATGCGCGGCCGACAGGATCTTGCCTCTCTCCCCGCTGAGCTCATCGCTCAGATCGGCAACCGCTGTCACCCTAAACTTTATGAAGAAGGTGACCCTGCAGAGAAACTGGAGCTAGTTTCAGGCACCAGTGTGTACATCTCACGAGCTCAGCTGATGAACTGTCACGTCAGTGCGGGGACCAGACACAAAGTCCTTCTGAGGAGGCTACTGGCTGCTTTCTTCGACAGGAGTACTCTGGCAAACAGCTGTGGAACTGGCATCCGCTCCTCCACCAATGACCCCAGCCGTAAGCCGCTGGACAGCCGAGTGTTGCACGCAGTCAAGTTTTACTGCCAGAACTTTGCCACCAGCTTTAAGGAGAGCGAGATGAACGCCATTGCGGCGGACATGTGCACTAACGCTCGGCGCGTGGTGAGGAAGAGCTGGATCCCCAAGCTGAAGCTACTGATGGCGGAGGGCGATGCCTATGCCAATTTCCTCCCCGACAGCATCAAGATGGAAGCAGACGGCCTCGGCGGCGAGCCTGCCTTCGAGACGGCAAGCCTGGAGGGCGGCGCTTCGGTGGAGACCGGAGGATCCTCGGGCGAGTCTCTGCAGGGTGTGGGCGGAGACAACGGCACTTTGTTTCAGTGAGCGACCTGGCGAGGAAAGCCCTGCCCCATCCCCTCTGCCGCCCCACCACCTACCCGCCTCCCACCCCGCTGCGTGACTCTGGGCTCTGCTGCTTCTGCCTGGGATGGGAAAGGGAGAGTCGGGTAGGGGATTGGAGGAGATTGCACGGTCTAGCGTCGGGAGGAACACAAGGGGTTGATGCCAGGGGCGCCATTTtcttttcaatcatttttgttttgctgaatAACCCTCTTTTGCACAGAAGATCCCCTTTGCCTCCAAGTAAATCTAGTCACCGATGCTATAGGAATGCGTAATTAGGACCAGGAAAAGTTCTTGCGGCGGGAGGGCCGAGGTTCCCTGATCTCACTCTACTGAATTTGAATGTATTTGTGATTTTGTAGCACCTGGCTATGTCAGACTAGCCGATTGTATTTGGCCCAGGAGGGAGACAGGAAAAATGATCTGAAGGAACAGCAGATGGAGAAAGTAGTgagggaggagaggagaaagagaagtAGGTGGCATATTCTGTCTCTCGTTCTGTCTAAAACGGAAAGAATCTGATATCCTCCTCTCCTTCCATTCCTCCCAAAATATATGTGGGATCTTAGTCTGCCACgttctttgttttttatgtCGCCGTTTTCTCCTTTCCCCTTCTACTTGTTCCACTGTGTGAGATTTATATGAATCCAGAGATGATGAAAGATGATTAAGGACTGTAAaggataaaaatatatttatctgcTCGCACCTTTAGAGCTCGAGAGAGAGGGAttgttttaaaatctctttttgtgtttttttttttttacctttttttttttttttcctcaaatgttTCTCAAGAGACACCTTGTTGTTGGGCTTTAAATGGAAATAGTGAGAAAAAATAAGGACTATTTTTGCATAAGGATTATCTTGCATTTCAAAGACTGGTGCTTGGCTTGTATCTCGATCACGTTCATGTCCGTAGCTGAATTCTGATTGGCCGTTTAGACCAGCGATGTACAATTTGCAGATTAAAGGGGTACTTTATCcagaaatgtaaattctgtcatcgtttccTCACCCCCATCTCAATTCTATTTTCATTCAGTGAGAGGCCAGTGGGGTTCAGAGCTGTTACGGACCCCATCGACTTTCATGGCGTGCGCATAAaagcattctttaaaaatatcttccttttatgttccactgaagaaataaagtcagaaaGGTTCAAAAagactcgagggtgagtaaattatgccCGAATCGGAtaagctatccctttaagagaaaagaaaaatcgtGTAGGACataaaaacaaagtgtttttaGTCTGTAAACCTTTTTAGCTTTCTTCCCCCCCCATTATCGCACACAAACACGCTTTTTACAGCCCAGGGGGAAGGGAGGTTGTGCTTCTTATTGTTAGTCACTTTACTGTCTTAAGGTTCGGGcctgactttgtgtgtgtttgggagcGGAGGAGGGTTTACATTGCCTGTGTCCCAGGAGAGGAGGAGCAGAATGATTAAGTCTCTTCATGTTGCCCATGTCCCTGTTTGGGCagctgtgtgtgcgtgtgtgtctgtctgtgctcGCTTAGGCAAGCATGTCTGTGTCCGCACAAGTCACCATCTGTATACATTCCTTGCACATAGTTGGCACTGTGCGTTTGCATGTGGGTGATGTGTTGAGTCGGGGATTTAGGGTATGTTTGTTTCTGCGTTTGTGCGCCCAAGGCGCCATACGGATGCTTTTAAGGAAATTCGGCCGTCTGAAAGTTTGCCGTAACCCGTGAACTTTTGCATATCCCAAATTTCCATCGGGATTTGAATGGGATTGCATGTGATGTCTTAATGTGTGCTCAGGCTTGGGTTTTAAACACACATGCCTCACGAAAACAGAAATTCGATACGGTaggctattttaatatttcatgcctGAGTTATTAGGCTGTGCTTCTTTGTATAAgtcgtgttttgttttttttgtttgtttttttttattttgcccgtCTGATCTCCTGGGACACATACAGTAGCCGCCCCCTTTCTGACAGAGGAAATGGACCTCTTTGCACCTTTTCGTAGACTGAACTAGAGCTTTTTGCACCTTTTTTGTAGAGGAGAGTGGTGGATTGTGCACCTTTTTTGTAGAGTGTAATCGATGGTTTTTGGACTAAACTTCATGGATGTGTATGTGTCGGTATCTGGCCCGGAACAGAATGCACCCCTGCGTCTGCGGCCAGCCGTGCTGAATACTGATGTAAATATCGAAGAGACTGTTGAACAGATTTTGACCACGTTTTTAACAGGTCGCTCGTCTTTTTAATTGATGGCTTACATTAGGTCTTTCACCCCTCTTGTTTTAgctcatgtttttatttcatttcttttatttgcataacCAAGTCTGGCTTACCTGCTGTTTGTATATCTggaaattgtagtttttttttttttctggcttaAGAGTCGTAGCAAATAAAGTGAACTCCTGGCAAGTTTACTACTTAAATGCAGTCTGGTTCAGGTCTGACCGGTGACCttgtttcttttccttttctttcggACCAGAAAACAATAATGCCTCTTGTGTAGAAATGTATAACATTTGAGAAGCCTGCGAAATCAACATCTGGGAACGTGCATGCATCCATTTCCTTCTCCGTTTTATTTCTCCATTCTTTTAGCAGACCACGTGTACTGTATTTACTTTTCAACTACTACTAATTCAAGGTGAAAGAGTTGACTTGCCAAGTTTTTTTAAGGATACAATATAGAGTTGTTTGACTGATGATAGAGTACTgagtattttttcatttctttttatcgACTAAAGTGCTGGGAAAGTGGGGGGCCATGGTGAGGGATGTACTGGTGCTATGTGTGCTATTCTTTAGATGTTAAAGGCCTGCTGGGTCACTGGTGCCTTTTCAGGAGGACTGCGGGAGACGAACTGCGTGTGTATCAGGGTGGGGCGCGGAGCGGCGgtgcttctctctctcctctcgcCGGCTATGACTGTGCCAGTGTTTATGCGTCCTCCATTTTGATGGCACAGATCACATATGCTGCATGCGTCGCTGGAGAGGAACCGCTGTGTCCATGCGCCACCTGCTGTCTGTGTGTTGTTACTGCAGCTTAGATTTACTTCTTACAGTCAACACCAGGGGGTGTCATGCCTGAGAAAGATGACTCTTGgtggccacaaaaaaaaaaggcctttcTCTTACTAGAAAGCTGAAGGTGACGTGTgtaatttgctttttttcagtgtaaaaataCAAGTAAGCCATTTGGTTTTACTTTAATTTCCCCCCCCAAAAGGCGTAACACTGTGGCTCTGTGACGCTATCAAAagttgctctgtttgtttgagcagcCAGCGCAAAAGAGCATCAACCCACGATAAGttcaaaatcattgtttttaaattacacacttcaccttaaAAGGTTTTTTACTTACTTAGCCTCGCCTGGTATGAAAGTGGGAATGAAGGGACCAGTGTTGATCAAAAAAGGCCGGGACGTCCATATCTGTCTGCCTATCTGTCTGTTCTCTGTGCCTGGGTAAAGCACCTTTTTCTGGGGTTTGTGTTCGTAGACTCCTCGGCACCTTGCAATTCAGTCTGACTGTGTCACGGAGCTCGGAGAGCAGATAGATGGCGGACACCTGAGTGGGTGGAGAAAGAGCGTGAGAGTTTTACTGCCCATAAGTCTTGTCATTCTTCCTTGTAACACAGTTTGTTGGGGTACTGTGCATTGTAGATCATTGTGAATTTGTAACCTGGTGGATCGCTGACAGCATGCCAGAGAAGAGTACGGCGCGATGTATTAAAAATTGAACTCTTTTTATAAACGGTGACTGTCTCTCCTCTCTGCAAAAAGGCAGAAACCGGGTCCGTCTGTTGTGGAGAGACGGGCTGGCTGTATTTTGCAGGTTTTCCTTTGGCTTGCAGTTTtcgctatttttatttttttttgtcaacctAAGCCTCTTTACCCAGAATGCAGCACTGCTATTCCACTCTAAATAACAGACATACCACATAAAGATACTCTCACCTCTTTCTCTGCGTGCTGCGTTCTCTTCCAGCACACCTCAACACTCTGCTTTCAGTCTTTCCCTGAAATGagacgacgatgatgatgatgattataacCCAACTTTGCAAATGTTTTGGTAAAGTAACGTGTGACAGCCGGACAAATTGGCGTCCGGACATAGCATCACGAATTACAGAGAAATACAGACAGGATGGGGATGACATCAGCTCGCTTGAACactcaaaacaacaaactggttGTGAACCTTTTTTTTACGATGCAGTGTCTCACTTTCTATGAATACATCCCTATACAaatctatatactgtatattacataGAAGCACTAATGAAGTTTGATTGTTAGTCGTGCACTCTCAGCATGAGTTGTAACCCATACCCAGCTGTGCTCATGCAGTGACCCTGTAACGCCAGTGCTCATCCACTCCATTCTGTCTGTGTTCAAAGTGCCAATAACTTTGTGAATCCCTAACTGTGACCCAATATTATCAAAAGTAATTGCACATTaactactgtaaaaaatgagTAAGAGAAAAGTCAAAGGATACAGCTGAATATCTTAATAAAAGTTTGTAACAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28784 lncRNA upstream 147960 12511926 ~ 12513721 (+) True G19326
TU28785 lncRNA upstream 147960 12511926 ~ 12513721 (+) False G19326
TU28700 lncRNA upstream 411684 12246208 ~ 12249997 (+) False LOC122341822
TU28736 lncRNA upstream 433161 12227935 ~ 12228520 (+) True G19287
TU28710 lncRNA upstream 526724 12132629 ~ 12134957 (+) True G19274
TU29145 lncRNA downstream 4595 12681258 ~ 12681565 (+) True G19579
TU29141 lncRNA downstream 6155 12682818 ~ 12686371 (+) True G19575
TU29234 lncRNA downstream 320554 12997217 ~ 13056733 (+) True G19656
TU29204 lncRNA downstream 329147 13005810 ~ 13096854 (+) True G19629
TU29202 lncRNA downstream 383497 13060160 ~ 13061606 (+) True G19627
XM_043235143.1 mRNA upstream 132878 12519837 ~ 12528803 (+) True gtpbp1
XM_043235144.1 mRNA upstream 132878 12519837 ~ 12528803 (+) False gtpbp1
XM_043235145.1 mRNA upstream 132878 12519837 ~ 12528803 (+) False gtpbp1
XM_043235146.1 mRNA upstream 132878 12519837 ~ 12528803 (+) False gtpbp1
XM_043235771.1 mRNA upstream 171619 12477842 ~ 12490062 (+) True mpp2a
XM_043228192.1 mRNA downstream 1733 12678396 ~ 12679757 (+) True ier2a
XM_043235716.1 mRNA downstream 93909 12770572 ~ 12772182 (+) True alkbh7
XM_043229474.1 mRNA downstream 218663 12895326 ~ 12900216 (+) True LOC122332168
XM_043229415.1 mRNA downstream 295814 12972477 ~ 12974627 (+) True LOC122332118
XM_043234624.1 mRNA downstream 426613 13103276 ~ 13107847 (+) True aldh3b1
XR_006250478.1 other upstream 132878 12519837 ~ 12528803 (+) False gtpbp1
TU28786 other upstream 147960 12511926 ~ 12513721 (+) False G19326
TU28787 other upstream 147960 12511926 ~ 12513721 (+) False G19326
XR_006249244.1 other upstream 348691 12303364 ~ 12312990 (+) False nbr1b
TU28690 other upstream 560829 12092603 ~ 12100852 (+) True LOC122342134
TU29192 other downstream 158718 12835381 ~ 12987913 (+) True LOC122332158
unassigned_transcript_277 other downstream 210494 12887157 ~ 12888061 (+) False LOC122332158
TU29613 other downstream 1021911 13698574 ~ 13702353 (+) False rbbp6
unassigned_transcript_286 other downstream 1236960 13913623 ~ 13913694 (+) True trnat-cgu
TU29734 other downstream 1372827 14049490 ~ 14053032 (+) True G19973

Expression Profile