RNA id: XM_043225981.1


Basic Information

Item Value
RNA id XM_043225981.1
length 3944
RNA type mRNA
GC content 0.59
exon number 25
gene id tecpr1b
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 26500010 ~ 26515546 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGCCGACCAATCGGGGAGAAGACGCCGCTAACTTCCTGCTTCGAGTCCGCGAGCCCTTAGAATAATGCtgggaataaaaataaacggcCAGCCGCCGTCTGTAACGCGCGGAATATATGAAGACTCGCTCCACGGTCATTAAACTACAGAGTAGGGCCCGTGATGTCGGGGGCGCAGCTGTGGGCGGTGGACGTGTACGGGCGGGGGTTCAGCCTGTGGGCCCCCGGGGGCCGCTGGAGGCGCTCCGCCGATCTCCTGCTGGAGCTGAAGCGGGTGACAGGCTCTCGCCGCTGCTGCTGGGGCGTCGGGTGCGACCATCAGGTGTATCTCCACGTCTATCCCGCTCGAGTGCCTATACGCCGGCAGGAGGAGACCTACGAGAACCAGGCGCGTGGGAAACCTTTCGGTTCATCAAACCTTCGAGGTGGAACCCAGTGGATGGGTACACAGACGCTCTCCTCCCGACGGACCGCTGGCAGTGGACGGACGAGTCGGGCTTGAACCCACAGCCTCTTCACAGCTTCGTGCTGCCGTCTGCTAACTGGGAGTGGGAGGGAGACTGGTACGTGGACGACGAAAGCTGTGGGAGAGAATCCAGGGAGACAGGGGGGTGGGAGTATGCAGTGGACTTCCCCGCCACCTTCACTAAAGAGAAGAAGTGGAACTCGTGCGTCCGTCGCAGGCGATGGCTGCGCTACAGGAGATATAAAGCACTGGGATCCTGGGCCAAGGTGCCTCTGGACAAAGCCAGACCTCCACCGGAGCCCTTCACCGACATCAGCTGCGGAGGCTGGGACGTGAGGGACAGTCCTGAGAAACACATTCACCTGTGGGCCGTGTCCCAGCAAGGGAAGCTGTGGTTTCGCGCAGGCATCACACAGCAGAACCCGGAGGGGACCCGCTGGGAACCCATCCAGGTGCCCCGAGAGGCGGCGCAGGTCAGCGCCGGGCCCAAAGACCTGCTGTGGGTCATTCTCTGGGATGGACAACTGCTGGCCAGAACGGGCATCGGTAAAGACTGCCCTAAAGgctCATCTTGGGAGCCAGTGCAGCCTCCCAATCAGAAAGGAGCTGTCCATGTTGCGGTGGGAGTCAACGTCGTTTGGGCCATCACTAAAGACAACAAAGTCTGGTTCAGGAGGGGCGTGAATTCCCACAATCCCACTGGCTCAGGCTGGATCAGTATCGGTGGAGAGATGGTGATGCTTAGCGTGGGGCCCAATGACCAGGTATGGGGGGTTGGCAGTGATGACCGGACTGTGTATTTTCGTCATGGCGTGACAGGCACAGAGGTCACGGGCAGGTCATGGGTGGCAGTGTCAGCTCAGCTTGATGGCAGCGAAAGCACAAATCATTCCAGTGTTGTGAACGACGCCAGTGTCTTCGCCGGTGAGCTCACGGCGCCTTCCCAGGGTTCAGTTCTGGGCTGCGACGACACGGACGTACCAGAGCCACGCGTCCCCAAGATCACGAGCGACAGCTTCATCTCAGCGCTGGTGTCTGATCGCTCCTCCCCGGCGCACGACCCGGCCTCCGAGGGTCACCCCAGCGTATCCGAGGACAACCTGGTGACGAGTCAAGAGTCGGACCCCTCCATCCTGAGCCCCAGCAGCCCGTCCGGCGGCAGCGAGACTCCGTGGAGCAATGTTGACCTGGAGGAGATGAAGGGCTCGCTTCCCAGCAGCACCCGGAGCTCCGTGGCCACGTACCCCTTTGAGCTGCAGCACAGCACCGTCGTGCAGGAGGAAGTGCCGCCCTGGGCCTGGGTCGCCGGTGGAGGATGTGACATCACTTCCGGCTCACATGTCCACTTGTTTAACGTCTCAGATCCCGGGcctctctctccatccatcaCACCTGCCCTCAGCGCTCAGACAAGAGCAGCCCAGCAAGAGAGAGACGCCTCTGTAGAGAAGTCTGTCCGTGTGACCAGGGGTCGTATGTGCTGGTGGAGGGACTGGACCCCTCACCAGTGGGAGGATGTCAGCGTGACGCTGGAGCAGGTCACCGGTGCTGGAGCTCAGACAGGAGACATCCTTTACCTCTACTACACTCACGACCAGGAGAAGAAGtatcTGTATGCTGTGATAAAGGAGGTGACGGCCCTGGTGCCCATGTTCAGGGACTCTCTGTACACTGTGGCCGTTTACACTCCAGACAGAACCAAACAGAGACAGCCCATTCTACTGGCTACTTCCTCTCAACAAGACTTCAGCGCCTGGctGTCTCTGTTGAACGAGTCGTGCTGCGCGTCCAGGGCTCTCGGGGAGCATCCGTCCAAGCAGGCCCTGTGGGCCGTGACGTGTCAAGGAGACGTCATGGTGCACGAGCCGTCCCCCGGTCTGGAAGCCCCAGCGCAGCACGTCCCCTGTGAGCACATGTTCTGGCGCCAGGTTCCTGCTCATCTGCTGTGTGTGGAGTCTAACAGTCTGGGTGTTGTGTGGGGCATCGCTCACGATCACACCGCCTGGGTCTACACGCCGGCTCGGGGAAGCGAAAGCCCCGAGCGAGCAGTGAGCGATGTTCGGAGCGTGCTCATCTACGAGAACCAGCGCTGGAACCCCATGACGGGATACACAGACAAGGGTCTCCCCACAGACCGCTACATGTGGAGCGACGCGTCGGGCCAGAGAGAGTGCACCAAAGACAACACCGGCCCTCCGTCGCCGCAGTGGACATGGGTTTCTGATTGGGCCGTCGACCACAGCGTCCCGGGAGGCACGGATAAAGAGGGCTGGCAGTACGCTGCAGATTTCCCAGTGACGTTTCACGGTCATAAGACGATGAAGGACTTCGTGCGCCGCAGGCGGTGGGCTAGGAAGTGCATGATCAGTCTCACCGGGCCGTGGCTGAAGGTTCCTCCGATCGCCCTGACGGACGTCACCGTCCTGCCGTGTCTGGCCCAGTGCAGCCTGGAGCAGGTTCCCGTGTGGGCCATTAGCGAGAAGGGAGACGTTCTGTGCCGCCTGGGAGTCACCGCCAGCAACCCGGCCGGTAATTCCTGGCTCCACGTGGGCACAGACCAGCCCTTCAAGTCCATTTGCATAGGAGGAGGTCACCAGGTGTGGGCCATCGCTAGGGACGGAGCAGTCTTCTACCGGGGATCAGTGTCTGCCCACAATCCTGCTGGTGAGTGCTGGTATCACATACCATCTCCCCCGAAGCAGACGCTCAGACAGGTGTCCGTGGGCAGGACCTCCGTTTATGCCGTGGATGAAAACAGTAATCTGTGGTACAGACAGGGTTTGACACCCAGCTATCCTCAGGGCTCTGCGTGGGAACTCATCTCCAGTAATGTGTGTAAGGTGTCTGTCGGACCACTGGACCAGGTTTGGATAATCGCTGATAAAGTGTCAGGTTATCCATCAGAGAGCTCGGGAACAGTGTGCCACAGACTAGGAGTGAAGCCCATGCAGCCCAAAGGCCTGAGCTGGGACTTTGGCATTGGGGGTGGATGGGAGCAcctgtgtgtgagagggaaCTCTACGGAGGCCCAGCGCGTGGCACCTCGCAGTCCAATGCCCAGCCGCACACAGAGTCAGGTGAACGGGAATGTTGTGGGCTGCTAGATACACTGCCCACCTaccatcatcatcgtcatcatcatcatctccacCTTCATCATGCTTGGCTGCACGACCCTTCTTGTCTGTGTCCTGTGCCGGTCCGCCCAAACGTGACTTTCATTTTGATTCCACTTGCCTGAGCAACAAACACCACGTTTGATTACTGTACGTGTATGATTTGACTCCAGTTTGAAGCATGTTATGTTTTCTTgttgatgtatttgtttgtgtaacGAGAAGACCGTTTTACGTTATCGGTTCGATTGTATTATttgaagattattttatttcagtccgTTTGCTTCGTCTTCCCTACTGTGATCTATCCATTGAcgtgctggggttttttttttcccaataaagATCTGTTAAAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35088 lncRNA upstream 2044 26492946 ~ 26497967 (+) True G23552
TU35079 lncRNA upstream 64163 26428219 ~ 26435848 (+) True G23550
TU35028 lncRNA upstream 308169 26179232 ~ 26191842 (+) False G23508
TU35027 lncRNA upstream 310086 26179232 ~ 26189925 (+) True G23508
TU34527 lncRNA upstream 366181 26131602 ~ 26133830 (+) True G23189
TU35137 lncRNA downstream 129725 26645271 ~ 26646452 (+) True G23594
TU35237 lncRNA downstream 207266 26722812 ~ 26723027 (+) True G23659
TU35242 lncRNA downstream 213262 26728808 ~ 26729365 (+) True G23664
TU35302 lncRNA downstream 283265 26798811 ~ 26801395 (+) True srsf2b
TU35307 lncRNA downstream 309562 26825108 ~ 26834654 (+) False G23692
XM_043235252.1 mRNA upstream 8294 26457623 ~ 26491717 (+) True LOC122341701
XM_043228183.1 mRNA upstream 121600 26364279 ~ 26378411 (+) True nptx2a
XM_043228175.1 mRNA upstream 121600 26364283 ~ 26378411 (+) False nptx2a
XM_043234722.1 mRNA upstream 141198 26358256 ~ 26358813 (+) True LOC122341389
XM_043233806.1 mRNA upstream 441679 26044229 ~ 26058332 (+) False srebf1
XM_043229759.1 mRNA downstream 26422 26541968 ~ 26546505 (+) True pvalb5
XM_043229750.1 mRNA downstream 26422 26541968 ~ 26546504 (+) False pvalb5
XM_043235322.1 mRNA downstream 32228 26547774 ~ 26551456 (+) True pvalb1
XM_043235324.1 mRNA downstream 37334 26552880 ~ 26554257 (+) True pvalb4
XM_043235325.1 mRNA downstream 39355 26554901 ~ 26559546 (+) True pvalb8
TU34502 other upstream 590835 25907165 ~ 25909176 (+) False LOC122341383
TU34498 other upstream 593676 25894657 ~ 25906335 (+) False LOC122341383
TU34460 other upstream 649435 25839626 ~ 25850576 (+) False G23146
XR_006250491.1 other downstream 145694 26661240 ~ 26704452 (+) False pitpnc1a
TU35285 other downstream 243548 26759094 ~ 26772903 (+) False ubald2
TU35297 other downstream 283265 26798811 ~ 26801395 (+) False srsf2b
TU35298 other downstream 283265 26798811 ~ 26801395 (+) False srsf2b
TU35299 other downstream 283265 26798811 ~ 26801395 (+) False srsf2b

Expression Profile