RNA id: XM_043226026.1


Basic Information

Item Value
RNA id XM_043226026.1
length 2378
RNA type mRNA
GC content 0.46
exon number 6
gene id rdh8a
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 9333096 ~ 9341003 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCATCCGACTGCGttaatctgtttgtttttgaaagcagtACAGTAAAGGCTGATGCTCGCGTAAGTAAGCATGCGTGTTTACGTCCTCCTTTAACTAATCGATTCTGTCTGCCATGTGACCGCGTAACCCGCTCACATGAGCGCCGAGTTGCATGATCCGCTTTAAGTTTTTTAAAGTCCGCTGCTTCAAGCTCGCGGCTGACACGGGAGTTGCCATGGCGAGCGGCGGCGAGCAGAAAGTGGTGCTGATCACCGGCTGCTCCTCTGGGATCGGACTGCGGATCGCCGTGCTGCTGGCCAGAGACGAACTCAAGCGTTACCATGTTATTGCCACTATGAGAGACCTGAGAAAGAAGGACCGGCTGGTGGAGGCGGCGGGTGACACATACGGAAAGACCTTGACGCTGCTGTCCTTGGATGTGTGCAGCGATGACTCAGTCAGGCAGTGTATTGACAGTGTGAAAGACCGCCACATCGACGTTCTCATTAATAACGCAGGTGTGGGTTTGCTGGGCCCTGTGGAGAGCATCAGCATGGACGACATGAAGAAAGTGTTTGAGACCAACTTCTTCGGAACTGTGCGCATGATAAAAGAGGTCATGCCGGACATGAAGAAGAGGCGAGCCGGCCACATTATCGTCATGAGCAGCGTAATGGGCCTGCAGGGTGTGGTATTCAACGATGTCTACACGGCCTCTAAGTTCGCCATCGAGGGCTTCTGTGAGAGTATGGCTGTGCAGCTGCTCAAGTTTAATGTGAAACTCTCTCTGATTGAGCCAGGCCCTGTGCATACAGAGTTTGAAACAAAGATGATGGAAGAAGTGGCCAAGATGGAATACCCTGGAGCAGATGCGGACACAGTCAGATACTTCAAAGACGTATACATACCATCGTCCATCGATATCTTCGAGGCACTGGGACAAACCCCTGACGACATTGCAAAATGCACCAAGAAAGTGATTGAATCCAGCCGACCCCGATTCCGAAATCTGACCAACAGCCTCTACACACCTATAGTGGCCATGAAATACGCAGACGAGACCGGAGGACTTTCAGTGCACACTTTCTACAACCTGCTCTTCAACTTCGGCTCACTTATGCACATCACCATGAGCATCCTCAAATGCCTGACCTGCAGCTGCCTGCGCAGACGCACCATCTCTCCTGACTGAAGAGGGCAGCAGTGAGGACACGCTCTCCCAATTCCCTCAGTTTACAGCAGAACGGACGCAAATCAAACACAAGAATATGATACCTCAAAGGAACGATCCACATTTATACACATCTGCACACGAATAATTTGGAGGTTTTCACTTAATCAAGTGAGTTGCTGTCAAAGCAGACATCGTTTTAAAAGAGTAAACTGGTTTAAGTTATTACAGTGATTGTCTGTTTTGGAAAAACTAGTTTATAAATCAAACCGTACACCATGACGGACCATTCAAAAAAGCTAATTGTGATGCTTATGATGGCCATGATTCAACTGAAAAAAGAATCACGTAGCTGCCTTTATTTGTGCTAATGATTTACAAGTAAATGTCTGTTTAACTCTTTCCCCGACGTTGACGGAACTTTCcagctttctgtgtttttactgTCGTATGGTAGGAGGCACTATTAAGACGTCTTCCGAAAGAgtactggatgtctggatcaaAACACGACTGCCAGAGACACATCTGAGAGTAGACAAGTCTGAAGCTCAGAGGGTAGAGGACTGACGCATTGCTGCTGCCTGACTGCTGAGGAGTCACAATATAACAACAAACTTGGGAATGCTGAACACTACGCTTAGGTACTGAGAATATAGTAAATGTGGGTGTTGTGAGGAACTGGGGTTTTTGACCAAAGGTCTGCATGGGTACAGAAATGGCAGGGAAAGTGTGGAAAAGGGAAAGAGTTGGGGGGGGGGAGGGAGAAACACCCAGCATTGGGGAGTCAGAAAATGCATGAGGAGCGAAAGAAACATACGTTAGAAGGAAACGTTTACCTGATTAAAGTAGTGAAAACCATTAAAGGACAGATCTGAGAAATGAAATGTGCGAGGATTCCAGGGAGATGAGAACTTGCTAATTGAATGTAACATTAAAGTTGGAGAAAGAAAGGTGGAAATTTGGCAAACGTTGAAAAACGTAAGGTGGTCAGATATGGGGAAGAGAGAGATTAGTGGATGCAGGGGGGGGTTCCCATTAATGTAAGGGAACTGGTGGAAAACCTAGATGTGAGAAATGGCGCAATGTACAAAAAGtgcatacagaaaaaaaaaaagtgtaagaaGAATGACGGATAAcctttattaattcaatttaagGGGAAGAGATCTACGTAAGGACGAGCTCTGTTTTTAAAGAcctattaaatgtttattgtaaaaataa

Function

GO:

id name namespace
GO:0006703 estrogen biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004303 estradiol 17-beta-dehydrogenase activity molecular_function
GO:0047035 testosterone dehydrogenase (NAD+) activity molecular_function

KEGG:

id description
K11150 RDH8; retinol dehydrogenase 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27489 lncRNA downstream 133394 9198608 ~ 9199702 (-) True G18388
TU27477 lncRNA downstream 149825 9182539 ~ 9183271 (-) True G18378
TU27434 lncRNA downstream 195704 9134105 ~ 9137392 (-) True LOC122331343
TU27443 lncRNA downstream 195704 9134105 ~ 9137392 (-) False LOC122331343
TU27431 lncRNA downstream 199283 9133614 ~ 9133813 (-) True G18357
TU27528 lncRNA upstream 72401 9413404 ~ 9414007 (-) True G18426
TU27547 lncRNA upstream 140318 9481321 ~ 9485355 (-) True G18439
XR_006250528.1 lncRNA upstream 171443 9512446 ~ 9533787 (-) True LOC122342127
XR_006250529.1 lncRNA upstream 191714 9532717 ~ 9533787 (-) False LOC122342127
TU27754 lncRNA upstream 230597 9571600 ~ 9571805 (-) True G18599
XM_043229924.1 mRNA downstream 38247 9265773 ~ 9294849 (-) False notch3
XM_043229915.1 mRNA downstream 38247 9265773 ~ 9294849 (-) True notch3
XM_043235697.1 mRNA downstream 72605 9255441 ~ 9260491 (-) True shfl
XM_043235698.1 mRNA downstream 78688 9252311 ~ 9254408 (-) True soul5
XM_043235696.1 mRNA downstream 81873 9246376 ~ 9251223 (-) True nr5a5
XM_043235554.1 mRNA upstream 197373 9538376 ~ 9563382 (-) True trip10a
XM_043235552.1 mRNA upstream 222748 9563751 ~ 9569327 (-) True icam5
XM_043235556.1 mRNA upstream 228450 9569453 ~ 9577610 (-) True angptl6
XM_043235264.1 mRNA upstream 251312 9592315 ~ 9605013 (-) True dnmt1
XM_043235265.1 mRNA upstream 251312 9592315 ~ 9605012 (-) False dnmt1
TU27085 other downstream 934268 8309552 ~ 8398828 (-) True fmc1
TU27088 other downstream 1021747 8309552 ~ 8311349 (-) False fmc1
XR_006250544.1 other downstream 1114041 8218902 ~ 8219055 (-) True LOC122342198
TU27061 other downstream 1124003 8207764 ~ 8209093 (-) False LOC122339740
XR_006248283.1 other downstream 1318395 8011441 ~ 8014701 (-) True LOC122331739
TU27537 other upstream 85569 9426572 ~ 9462905 (-) True G18433
XR_006250486.1 other upstream 1053311 10394314 ~ 10396341 (-) True eef2kmt
XR_006250541.1 other upstream 1438098 10779101 ~ 10779235 (-) True LOC122342195
XR_006250542.1 other upstream 1439099 10780102 ~ 10780196 (-) True LOC122342196
XR_006248663.1 other upstream 1670933 11011936 ~ 11064583 (-) False lrrc4ba

Expression Profile