RNA id: XM_043226144.1


Basic Information

Item Value
RNA id XM_043226144.1
length 4565
RNA type mRNA
GC content 0.46
exon number 34
gene id LOC122329679
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1508493 ~ 1516411 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTGGGACTACATTGTTGTAAGGAACTGTAGAGCAGTAAATGGTAAATTGCAGCAGACGTTCAGCTGGGTTTCTGAAAGAGACGCTCAATTGATATCCGGTCTTGGATGATAGCTTTTTATGGCTATGATGGAGATTTGTGTTTGGAAAGGATTTATTTTAGCCCTTCTCTTCTTTGCTGCTGATGGGGAAAGACGGCGGCCATTCACTCTTGATAGACCAAGATCAGAGCCATTTGCTGTTGACGGACAGAGATCAGGGCCATGGTTCTTGGTGTCTTTTCCTGCAGTGATTGAGAGTGGCTCTGACACCAAATTGTGTGCAAGCCTTTTAAAACCCAATGAGAGTCTCACAATGACCGTTTCTCTACTCGATGACAAAAACATGACGACCCCTCTTGTGCAGCAGAGCTCCCGGACGGCTTTTCACCAATGCTTTGATTTCCAGGCTCCTCAAGTAGATGGAGAATCGGTGCAGAAGCTGAATGTGGAACTTCAAGGAAGGGCCTTCAAACTGACAGAAGAGCGGAAAGTCATGTTCAGACGTTACCAGCCTTTGACCTTCATTCAAACAGACAAACCCATCTACAACCCAGGACAAACTGTGAACTTCAGAATTGTGACCATGGACGCTAAGTTTGTGCCACTTGATCAAATGTACAGTCTGGTGGTTGTGGAGgACAATCGTAGCAACAGGATTGGTCAGTGGACAAATATTTCCTCAACGGGGTGGATATTGCAGCTTTCTCATGGCTTAAACCCTGAGGCTCAAGTTGGGATGTATACGTTGAGGGCTTTCATTGGTGACCAAATGACCTCCCAGGTTTTTGAGGTGAAAAAATATGTTTTACCCAAGTTTGATGTCACTGTAAATGCACCACAGATGTACAGTGTTGGAGATGTGGGGCTAAAAATTGAAGCTTGTGGCAAATATACATACGGGCAGCCTGTACCTGGTCAAGCATTGGTGGAAGTGTGTCGTGAGCCATTTCCGTACAATGTGGTTTCTGAGGCCACCCGTTTCtgcataaataaaactgctAAGATGATTGACACTGGCTGTGCCTCCCTCACCCTCGGTACATCAGCATTTTTCAACACCAGATTTGAAAGCAATCTGCAAGATTTGTTTCTTGTTAACATAAACGTCACTGAGGAGGAAACGGGTGTAGTTATGTCGAAATCGACAACAGTTCCCATTACGTTTGAAGTTGGCAAGGTCACGTTTATGTACCTTCCACAGTTTTTTGAATCTGGATCAAGGATTAATGGAAAGATATTGGCATCCTATTTCAATGGCACTCCAATTGCAAGCAAAGCAGTCTATCTACTGGATGGTAGCCAATGGCCCAATAAAGTACTATTGAATCTGACTACAAATCAAAATGGACTTGCCACTTTCTCCATTAACACTACTGATTTCCCTAAAGCTGGTCTGAATCTGATGGCAAGTGCAACTGCAGAGGTTGCTTATGGTTATAAATCACCATTCTTCAGTTCAGAAACAAAGACTCTGTCTCTCCTCCAAGCTGCTACTCCTGACAACCCCATGTTTAGTGAACTGTCAATAGTGAAGCTTGAGCAGCCACTGAAATGTGGTGCTGAGTATTCAGTGACCATCAAGTATTCGTTTGTTGGAGAGACTGGTGATTACTCTGCTGACATCATTTATATGGTTTTGTCCAGAGGACTGATTGTGCTGCATGGATTTGAGAAAGTTGAAGCATGGGCTTCTAACAAGGTCACAAGTGATACAGTGTCATTTCAGCTGTCTGTAAGTGTGGATCTGGCTCCAGCAGTGAAGATTTTGGCCTACTGTGTTCTGCCCAGTGATAATGTTGTTACTACAAGCGCATCCTTTGACACTGAAACGTGTTTCCAAAACAAGGTGTCTCTGCAGTTTTCTCCAGCTACAGCTGTTCCTGGTGAAGGAAACACTTTGACTATCTCTGCTCAAGCAGGATCTCTGTGTGGCCTCAGTGCTGTTGATCAGAGCATCCTGATCATGGAGCCAGGAAGACACCTGAGTGCTCAAGCGGTGTTTGGCTTGCTTCCAGTGCAGTCATTATCAGATTATCCACCTGGTGTTGAGGATGAACAGGAATGCCTGAATGTTCGACCTCGCCGCGCTGTTCCTGAAGACCAAGCTTATGAAGCTTTCAAGAGAATGGGGATGAAGGCAGCAACAAATCTACCAATCAGAGAACCTCAGTGCCTGATGTACAGAGGCTTGAATTACTATCGCAACTTTCATGATGTGAAATATTTCCGTAGTCCTGTTGCACTGGCTGAAATGGTTCCTGCTGCAGTAGAAAAGAGTGCTGGAGAAGAGAGTAGATCTTCTTTTGATGTTACCATCAGGACTTACTTTCCAGAAACATGGATCTGGCAACTTGCTCAAGTGGGAGACTCTGGATCCACACAAGTTCCCCTCACAGTTCCTGACACAATCACCACATGGGAAACTGAGGCATTCTGTCTGTCCTCCAGAGGTTTTGGTTTGGCTCCTCCTGTTAATCTGAAAGCCTTCCAGCCCTTCTTCCTGGAGCTCTTGCTGCCTTACTCCATCATCCGTGGGGAGACTTTTGAGCTGAAGGCCACAGTCTTCAACTATCTGTCCAAGTGCATCATGGTTAAGGTTCGAGCGAATCCATCTCAGCCCATGGTCTTTACTCTTAGACCAATTAATGAGGCATATTCGTCTTGTCTCTGTGCCAAGGGGAGAAAGACCTTCAAATGGGTTTTCACCGCTTTTGTTCTTGGAACTGTAAATGTGACTGTCAATGCTCAAGCTGTACAATCCCAGACTCCATGTGGTAATGAGATTGTTAGTGTGCCAGAAAGAGGACGCACCGACGTGGTCACACGAAGTCTACTTGTCCTGGCTGAAGGAGTTGAAAGGATAAAGACCCAGAGTTTGTTACTGTGTCCAAAGGgaAGTGTGGTTTCCGAAGATGTGACACTGACGTTTCCTACAGATCTTATCCAGGGATCAGCTAGATGCTCAATTTCAGTTCTTGGGGATATAATGGGTCGTGCACTAAAGAATCTTGATAACTTATTACACATGCCATCTGGCTGTGGAGAACAAAATATGATTGTTCTGGCTCCCAATATTTACATCCTCCAGTACTTGCAAGTCACGGGCCAACTCACTGCAGCCATCCGACAGACCGCCACCCGTTACCTTCAAAGAGGATACCAGGGACAATTGAACTACAGGCACAATGATGGTTCCTACAGCACCTTTGGTTATGATGAATCCAATACATGGTTGACAGCCTTCGTCATGAGGTCTTTTGGCTTAGCAAGGAACTTCATCTTCATTGATCCAAATATCTTTCAGAGTGTGAAGGACTGGCTGATCAGCAAGCAGGGTTCAGATGGTTGTTTTATGCAGCAGGGGACTCTGTACCACAGTGACATGAAGgGTGGAGTTAGTGACAATGTGACCATGACAGCCTACATCGCTACATCACTGCTTGAACTAAATGTCCCTGCTACGGATCCAGTCATTACCAGAGCTCTGTCATGCTTGAGGCCTGTCGTTGGGAACCTGGGAAACTCCTATATCATGGCTCTGCTTGCCTACACCTTCAGTCTGGCTGGAGAGACTAGTACACGATGGCAGCTTTTAACTGCTTTGGACAACCGTGCTACTACTGAAGGCACTAAGCTCCATTGGTCTCAGACTACATCTGGTGATACTCTGGCGGTGGAGATCAGCTCTTATGTGCTGCTGGCAGTTCTCTCCGTAAAGCCTCTCAGAACAGCTAATCTGACCTATGCTAACCGCATTGTCAACTGGCTTGTAGCCCAGCAGAATCCTTATGGGGGCTTTTCCTCTACCCAGGACACAGTGGTGGCTCTTCATGCTCTGTCTCTGTATGCCACTGAAGTGTTTAGCTCAGAGGGCTCCAGCACTGTTACTGTACAGTCAGTTGTGGCAGGGGAAGACACTTATAGTTTCTCTGTGAATCGGGAAAACCGGCTGCTGTATCAGGATGCGCTGCTGAAGACTGTCCCAGGCAAATACAGTGTTAAAGTCAAGGGCTCCacctgtgtgtctgtgcagACTGCATGTTTCTACAACATCCCAACACCtacaaaagtaacaaaaacacTGAGTGTTGAAGCAAAGGTGACTGGAGACTGCCAACCACTTGGAGCCAATCTCATGTTGAACTTCACAGTGAAATATAATGGAACAAAAGCAAGTACTAACATGGCTCTGGTGGACATTAAACTCCTGTCAGGCTTCACAGCAGACACATCACTGCTTGGATCTTCACCCACTTCATTTGCCCCGTCAGTGGAGCGGGTTGATGCTGGAGAGGATCACGTCCTAGTGTATCTAAAAGAAGTTCCCAAAAGAGTTCCCCTGACCTACAAACTGCAACTGAAATCTGGGCTTGTGGTAAAAAATCCAAAGCCAGCGGTCATCACAGTCTACGACTACTATAAGCCAAGTGATGCATTTGAGACCACCTATGTGTCCCCCTGTCAATGAGCGTACTTCATTACAATCTAGTGGACACATGACTCTAATAAACCTGCTTTTACTCAA

Function

GO:

id name namespace
GO:0005615 extracellular space cellular_component
GO:0004866 endopeptidase inhibitor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23696 lncRNA upstream 17714 1485571 ~ 1490779 (+) True G15944
TU23731 lncRNA upstream 66751 1441259 ~ 1441742 (+) True G15972
TU23726 lncRNA upstream 93294 1414215 ~ 1415199 (+) True G15967
XR_006248053.1 lncRNA upstream 123599 1383248 ~ 1384894 (+) False LOC122330682
XR_006248052.1 lncRNA upstream 123729 1383248 ~ 1384764 (+) True LOC122330682
TU23779 lncRNA downstream 98749 1615160 ~ 1615529 (+) True G16004
TU23770 lncRNA downstream 103496 1619907 ~ 1865229 (+) False G16002
TU23788 lncRNA downstream 172631 1689042 ~ 1704676 (+) True G16008
TU23818 lncRNA downstream 254346 1770757 ~ 1979709 (+) True G16027
TU23819 lncRNA downstream 260575 1776986 ~ 1989269 (+) True G16028
XM_043226504.1 mRNA upstream 45240 1456950 ~ 1463253 (+) True LOC122329871
XM_043226529.1 mRNA upstream 45240 1456950 ~ 1463253 (+) False LOC122329871
XM_043226514.1 mRNA upstream 45240 1456963 ~ 1463253 (+) False LOC122329871
XM_043226521.1 mRNA upstream 45240 1456963 ~ 1463253 (+) False LOC122329871
XM_043227058.1 mRNA upstream 55409 1450238 ~ 1453084 (+) False LOC122330185
XM_043226155.1 mRNA downstream 1097 1517508 ~ 1525476 (+) True LOC122329687
XM_043227300.1 mRNA downstream 41940 1558351 ~ 1565942 (+) True cdc42ep1b
XM_043226042.1 mRNA downstream 50934 1567345 ~ 1579821 (+) True LOC122329645
XM_043226055.1 mRNA downstream 74267 1590678 ~ 1601654 (+) True LOC122329650
XM_043227680.1 mRNA downstream 144110 1660521 ~ 1663598 (+) True LOC122330554
XR_006247969.1 other upstream 106325 1395847 ~ 1402168 (+) False LOC122330032
TU23709 other upstream 115643 1390739 ~ 1392850 (+) True G15955
TU23688 other upstream 216929 1290969 ~ 1291564 (+) True G15939
TU23529 other upstream 459233 1048003 ~ 1049260 (+) False LOC122330066
TU23504 other upstream 499190 1005995 ~ 1009303 (+) False LOC122330135
TU23776 other downstream 42976 1559387 ~ 1649494 (+) False G16003
TU23773 other downstream 99297 1615708 ~ 1646532 (+) False G16003
TU23778 other downstream 99825 1616236 ~ 1649494 (+) True G16003
TU23769 other downstream 102901 1619312 ~ 1865229 (+) True G16002
unassigned_transcript_273 other downstream 104512 1620923 ~ 1620995 (+) False trnar-ccu

Expression Profile