RNA id: XM_043226164.1


Basic Information

Item Value
RNA id XM_043226164.1
length 4663
RNA type mRNA
GC content 0.43
exon number 11
gene id LOC122329695
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 571938 ~ 610361 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTTTTAAAGACTGACCGTGTcctgaaaacaaaatgcaaaataaaatcgaaagcaaaaaattcaaaaagctACGGCCCAAGAAGCTGAGAGCTTATATTCCTAGCGAGGGACAAGCTCTATTACCTGAGGATCTCCTGAGATGGCAGGAAAAGAGCATCCTCATCACTGGCAAACCTGGAGTAGGAAAGACGTCGGTTGTCTTGGAAATGCTGCGTGTTTGGGCAGAGAAGGAATACAGAGAGATAGACTACATGTTTTACTTTGATGAAAGTGTTTTGGCCCACGATGGCGTTTCCAGCCTGGAAGCTCTTTTGTTTGATGGGTATTTAAGACCAatggaaaaagacagaaaagaagtGTTTGAAGATATTGAGGAAAACAATGAGAATGttgttattgtgtttgatggtgTGACAGATTTGGAAGAAAAATCCATCTTCTGGAAGATCATGAACAATGATCTCCTGCCTGATGCCAAGATCGTGATCACCTGCAGGTCAGAGGTGGAAGATGATCCAGTTTTCTCTGACTGGCCGTCACAAACAGTGTATGTCCAAGGATTCAGTGAAGAGTCTATCAAAACTTACTACCGGAGTAGATTGAGTCATGATCCTGGTCTTCTAGAAGTTGTTTTGAAGAATCAAGGGCTGATTAGTCTCAGTCATGTTCCATTGTATGCGTTCATGATTGTAAGCTCAATTAAGTCTAAAAATGGCACTGTATTCAATAATCAACACACAGTCACTGGGATGTACGTCCACATTTTCCGCTTTGCTGCGAAGAAACATGggaataaacaaaataagcaaataGATAAATAcctgaaagagaagaaagatcAGATTCATCTATTGATGGAAAATGCTTTCAATGCAACTATGAAAAAGTGCTTGAACCTTCCAGACATTAGCTGTGATGAGACTTTTTGTCACGCTTTTCTGAAAATGATCACAACAAGAGACTCAACAACATACTGTGCGTTTCTCCACAACACAATGCAGGAATTCTTCTCTGCATTGTGGCTTCATGAACATCCAGATGAAATCGAGGATGTTCTACAGCTCTGTCAGACCGAGAAGCATAAACACATGAGACACGTTCTTCCTTTCTTATGTGGACTTCTGAGTGAACACAACACCAGACTCCTCAAGTGTCTCTTCGCAGAGGATAAGATAAAGAGAACATCTGACTACTTCATTGAGAAGCTTTTGGACACGTTTCTTCAAGCTCAGAGTGAGAATGAAGATGTTGATCTTCTCTATGTGTGTCAGTGCTTGTATGAGCTCCAGTCTCCTAAAGCCTGCTCAATTCTCCTGGAGAAGATAGACCATCGGCTTGATCTAGACGTGGATCTGGATCCTCATCATTGTTGTGCTTTATCTTACGTGATCGGTCAATCCAGAGATAAAGAGGTTTATCTGAATCTGGAGCACTGTAACGTGACTGATGTAGGAATAGACATGATGCTCAGCTGCTCTCCATACATCAGgTTAAAGACTTGTAAAGATTCACTGGAGCAAATCACCTTCTTTGTAGAATTATTCCATAAATCCTCCCAGTGTGACTGCAAACTATTTGAGGTGAGAGGACAATACAACCCAGAAGAAATCAATGCTCTGCTGGATCTTTGCTCTCACGTGAAGATCTATGAGACTCAAACAGGCAGGAGTTATCTTCCAGCATTACAGTCAGTATTTCAGTCTCCTGATAAATGGATCATAGATCTCTCAGAGAGAAAGATCTCCATCCTCCTGGAAGTGCTGAAGCtccagaaagagaagaaagcagtAGAGCTGAGAAGATtttcagaggaagagagagaagtgaAGAGTTTCCTTCAGTGTCTGCCCTACATCTCACAGCTGAGattctctgaTCAGACTGAAAGTAGGAGATTTCTTCTGAGACTCTTCATTAAAGCAGCAGAGATTGAGACACAGACAGGAGAACAGATGCTGAATCTGTTAGTGTCTTTCTGCACCAGctcttattattatgaatggacttacatattttattatactgatTTCCTGCTGGATCTTTACTCTCACGTGAAGATCTATGAGACTCAAACAGGCAGGAGTTATCTTCCAGCATTACAGTCAGTATTTCAGTCTCCTGATCAATGGATCTTAGATCTCTCAAAGAGAAAGAGCTCCATCCTCCTGGAAGTGCTGAAGCtccagaaagagaagaaagcagtAGATCTGAGAAGATgttcagaggaagagagagaagtgaAGAGTTTCCTTCAGTGTCTGCCCTACATCTCACAGCTGAGattctctgaTCAGACTGAAAGTAGGAGATTTCTTCTGAGACTCTTCATTAAAGCAGCAGAGATTGAGACACAGACAGGAGAACAGATGCTGAATCTGTTAGTGTCTTTCTGCACCAGCTCTTATGATTATGAATGGACTGACATATTTTATGATACTGATTTCCTGCTGGATCTTTACTCTCACGTGAAGATCTATGAGACTCAAACAGGCAGGAGTTATCTTCCAGCATTACAGTCAGTATTTCAGTCTCCTGATAAATGGATCATAGAtctctcagagagaaagagctcCATCCTCCTGGAAGTGCTGAAGCtccagaaagagaagaaagcagtAGATCTGAGTAGATgttcagaggaagagagagaagtgaAGAGTTTCCTTCAGTGTCTGCCCTACATCTCACAGCTGAGGTTCTGGAGGATTCCTAATAAAGAAGAAAGGATGTGTTCAGTCAGAGTCCTGCTGAATCTCTGTGTTGCTGCAGAAGAAACTGACAGAAATACAGGAACAAGATTCTCCAGTCTGCTGTTATCTGTGTGCAGCTACAAAACATTCCCTTTTGATGAAGAgatttatgatgatgatgatgatgttcaGACTGATTTCCTGCTGGATCTTTTCTCTCACGTGAAGATCTATGAGACTCAAACAGGCAGGAGTTATCTTCCAGCATTACAGTCAGTATTTCAGTCTCCTGATAAATGGATCATAGATCTCTCAGAGAGAAAGATCTCCATCCTCCTGGAAGTGCTGAAGCtccagaaagagaagaaagcagtAGATCTGAGAAGATgttcagaggaagagagagaagtgaAGAGTTTCCTTCAGTGTCTGCCCTACATCTCACAGCTGAGaCTGTCTAAAGAGACTTCCCAGAAGCTGGTTGAATGTGTTTATGAAGGTCAAGAAGAAGAACTGACTCAACGCTTCCTGCAGAAAGTGGAAGGAGATCTGACGTCCTGTTCTTTGAACTGGGAAGAGCTTCAGTATTTCCTGCGGTCCAGAATTCAACAAATCACTGTGGACGTCAGAAACAGTGACATTCAGTGCAGAATCAGTGAAATTCTGCCTTTCCTAAACAGGATTCAGTTTAAACGGATGAGCTCTGCCTTCATGCTGCGTCTGATCAGAGAGATCTATGAGTCCGGCTCTGCTGCGTTTGCCTCCAGTCTGTTGAGTTCAGTGGAGAACTACATTAACCTGCAGAGCAGAGATCTGGACTCTGTTCACTGTGATGCCCTACGCTTCACACTTCAGCACTGCACTGCAGCTTCACTCAATCTACAGTGGACCTCCGTACCAGAAGAAGAGCTGGAGAGCATCCTGCCTCTCTTCACACATGTCTCCAGCCtcagTGTTGACAGGCTGCTGTTGCTAAAGATACTTCATTGCTGCAGTGTCTCTGATGTCCAGCAGGAGGCAGCAGCTGTTCTTCTCTCTGTCCTTCAGCACAAGCTGGACTTCTCCTGCCGCTTTGCTCTGGATCTGACAACAAACACAGACTCCGAGCCTCTACATCTGACCACTGATGACTGCTGTGTGATGTCCAGAGTCATTCAGAGAGCTCATTCAGACACAAAGACACAGCTGATTCTTCAGGACTGTGAGATTCCTACAGCTGGAATGAATCAGCTGTTCCCAGTGTTACATTCTGTTCAGCTCTGCTGTGATAAACCTCTGCTGCTTCAGTTTCTGGCTCATGTGAGGCCTGAGGAagctcattctctctctcaagCTCTGGGTGGAGAGCTGGATGTCAGTCAGACTCCGCTGGATCTGCAGGCCTGTAGAGGTCTGGAGCTGATTCTGGAATATTCTGAAGGACTGACAGAACTGGATCTGAGTCAGTGCCATCTCACAGATGATAGTCTGGATCTGCTGCTCCCAAACCTCCACAAAGCGCAAAACATTGAttttagtgGCAATGATATCACTGACGCTGGGGCTGATAAGATCTACAGGATCGTCACTCTCAACAGTAACATAAAGACAGTAagGCTCTTCAGCAACAGAATTGATTCCAGGGAGCTCTTCAGCACAGACCCACGATTTGAGATCTGGTGAAATTCTGGTGAAATTCTGGTGAAATTCTGGTGAAAACTGGAAAAATAACACATGGGTAGTAAGGTAAAAACTATGAGGAGTCTTCCATCAGAGTCACAGAGCAGAATGTAAACCACATCGATTCGTCTCTGTTACattaactgttttaaaacattatgaaatCAATCTTCACTGTAAACTGTCTTTTCATCTCTCTAccctttaaatgattttcattatcCTGCATTATGGTGATTTtatgggtttatttatttttaactgaactAACTGGAATCActaaattcaataataaaatgcagttaactgaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23110 lncRNA upstream 49267 520750 ~ 522672 (+) True G15550
TU23100 lncRNA upstream 91639 478439 ~ 480300 (+) True G15546
XR_006248088.1 lncRNA upstream 115273 454766 ~ 456666 (+) True LOC122330779
TU23049 lncRNA upstream 149041 421535 ~ 422898 (+) True G15507
TU23075 lncRNA upstream 203988 361919 ~ 367951 (+) True G15527
TU23164 lncRNA downstream 66705 677066 ~ 678095 (+) True G15586
XR_006248068.1 lncRNA downstream 85390 695751 ~ 697558 (+) True LOC122330711
TU23041 lncRNA downstream 85636 695997 ~ 697709 (+) False LOC122330711
TU23045 lncRNA downstream 85636 695997 ~ 696831 (+) False LOC122330711
XR_006248084.1 lncRNA downstream 171622 781983 ~ 783076 (+) True LOC122330767
XM_043229411.1 mRNA upstream 119065 450471 ~ 452874 (+) True LOC122331907
XM_043226555.1 mRNA upstream 278527 289442 ~ 293412 (+) True LOC122329895
XM_043229165.1 mRNA upstream 293707 266330 ~ 278232 (+) True LOC122331655
XM_043227068.1 mRNA upstream 303684 245228 ~ 268255 (+) True LOC122330203
XM_043226671.1 mRNA upstream 352825 215085 ~ 219114 (+) True LOC122329952
XM_043227369.1 mRNA downstream 15003 625364 ~ 636239 (+) True LOC122330407
XM_043229559.1 mRNA downstream 28467 638828 ~ 639299 (+) True LOC122332267
XM_043226129.1 mRNA downstream 89354 699715 ~ 711401 (+) False LOC122329668
XM_043226120.1 mRNA downstream 90217 700578 ~ 711401 (+) False LOC122329668
XM_043226110.1 mRNA downstream 90395 700756 ~ 711401 (+) True LOC122329668
TU23138 other upstream 14858 553698 ~ 557081 (+) True G15563
TU22959 other upstream 272618 297895 ~ 299321 (+) False LOC122330774
TU22968 other upstream 496305 73544 ~ 75634 (+) True LOC122331567
TU23155 other downstream 15004 625365 ~ 635609 (+) False LOC122330407
XR_006248020.1 other downstream 144070 754431 ~ 768972 (+) False LOC122330463
TU23504 other downstream 395634 1005995 ~ 1009303 (+) False LOC122330135
TU23529 other downstream 437642 1048003 ~ 1049260 (+) False LOC122330066
TU23688 other downstream 680608 1290969 ~ 1291564 (+) True G15939

Expression Profile