RNA id: XM_043226579.1


Basic Information

Item Value
RNA id XM_043226579.1
length 1932
RNA type mRNA
GC content 0.56
exon number 16
gene id rangap1a
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2002679 ~ 2010431 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACTACAAACCCCATGAACCTTTGCGCGCGTGCGCCGCTACGTCATCAGAACGAGCGGGAGGAAGAAACCGGGTGAAACAGAAATACATCTGCGCGCAGAAAATCTCATCAAACGACCGCTTTGGTGTCAAGATGGCATCGGACGACGTGGCGAACCTCGCCGCCTCATTGGCCAAAACTCAGGTCGATGAGGGCGAGCTCAGTTATAAAGGACAAGGCCTTAAACTGGACAACGCCCAGTCCGTGGAGACGATGGTGAAGGAGATCGAGGAGTTCGACGGCCTGCGCGCGCTCCGGCTGGAGGGGAACACCGTCGGCTTGGAGGCGGCGCGGACCATCGCCAAAGCCCTGGAGAAGAAGAGCGACCTGCAGTGCTGCCACTGGAGTGACATGTTTACCGGCCGCCTGCGAGCGGAGATCCCTCCAGCTCTGGTTTCTCTGGGCGATGCGTTGATCATGGCTGGAGCTCGGCTGAAGGTCCTGGATCTGAGCGATAACGCTTTCGGCCCCGATGGTGTGAAAGGCATCGAGCAGCTGCTGAGGAGCGCCGCCTGCCACACGCTGCAGGAACTGCGTCTGAACAACTGCGGAATGGGCATCGGAGGAGGGAAGATCCTGGCGGCGGCTCTGACGGTGTGTCACAAGGAGTCGAGCGCGCTCGGGGCCCCCTTGCAGCTGAAGGTGTTCATCGCAGGCAGGAACAGACTGGAGAACGACGGAGCCACAGCACTGGCGCAAGCCTTTCAGTTGATTGGCAGTCTAGAGGAAGTCCACATGCCCCAGAATGGCATCAATCACCCAGGAGTCACTGCTTTAGCCACAGCGATGCAGCACAACCCACAGCTACGAGTCCTGAACCTCAACGACAACACTTTCACCAAGAGAGGAGCGATCGCCATGGCACAGgcATTGAAACACCTGCGCAACGTGCAGGTGATAAATTTTGGCGACTGTCTTGTTCGGTCTGAAGGAGCCAGTGCTATAGCAGAGACCCTGAGAGAAGGACTGCCGATACTCAAGGAGCTGAATCTGTCTTTCGGGGAAATCACGGAGGAAGCTGCGTTGGAAGTGGCTCGATCCGTAAAGCATAAAGATCAGTTTGAAAAACTCGACCTGAATGgGAACAGTTTGGGTGAAGAAGGCTGTGATAATCTGCGGGAGGTAATGGAGAGCATGGACATGGCAGACAAACTGGGCACTCTGAGCGATGACGAGGGAGAGCCTGAGGAAGACGAAGATGAGGAGGAAGACgatgacgacgacgacgatgaagaagaagatgtggaggaagaagaggaggaggacgaagaagaagaggaggaggaggatgagggcGAGGAAGAGAAGAGTGAATTAAACCAGTTCTCGACGCCTCCTTCAGCGCCTCGGACTCCAGACGTCTCGTCTTTCCTCAGCTTTCCGTCTCCAGACAAACTCCTGCGACTCGGCGCAAAGAGAAGCTTCCTCATCCAGCAGCAGgTGGACGTGTCGGACGTCAGTAAGACCGTGGAGGCGTTCCTGAAGATCTCGTCGGTGTTTAAGGAAGACGACGGCGAGGTGAAGGCAGCCGTGCTGGAGAGCGTCGacgcAGTGCTGAGCAAGGCCTTCCTCACACCCTCCTTCCAGGGCTTGACCTTTATGTCGTCGTTGCTGGTGATGCTCGGACTGTTAAAGAGTGAAGACAAGCTGAAGCCGGTGAAGGTGGTCCCAGGACATCTACAGTGTCTGGAGCATGCCGTGAAACAGGGCTACTTCCCTCGAGAACACATCACCGTGCTGAAGGCTTTCATGGCCAGGCCGAATAAGTCTCTGGAGCCGTGCAGCAGCGCTCGAGACCGTCTGAAAACCACCCTCCAGAAACTCACAGCCGAGAGCTGAACAGCGCTCTTGCATCTGATTGTtaatattaaactgttataaCATGTCTCGAAA

Function

GO:      GO:0005098,GO:0032853

KEGG:

id description
K14319 RANGAP1; Ran GTPase-activating protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23819 lncRNA upstream 13410 1776986 ~ 1989269 (+) True G16028
TU23818 lncRNA upstream 22970 1770757 ~ 1979709 (+) True G16027
XR_006248070.1 lncRNA upstream 58950 1942689 ~ 1943729 (+) True LOC122330717
TU23808 lncRNA upstream 111652 1871280 ~ 1891027 (+) False G16017
TU23807 lncRNA upstream 129159 1871280 ~ 1873520 (+) True G16017
TU24127 lncRNA downstream 13917 2024348 ~ 2320138 (+) False G16222
TU24151 lncRNA downstream 17963 2028394 ~ 2030843 (+) True G16233
TU24161 lncRNA downstream 33220 2043651 ~ 2046384 (+) True G16243
TU24140 lncRNA downstream 39754 2050185 ~ 2056000 (+) True G16226
TU24129 lncRNA downstream 46250 2056681 ~ 2320138 (+) False G16222
XM_043230813.1 mRNA upstream 60886 1925747 ~ 1941793 (+) True LOC122333258
XM_043227073.1 mRNA upstream 132069 1867624 ~ 1870610 (+) True LOC122330213
XM_043230436.1 mRNA upstream 272682 1728370 ~ 1729997 (+) True LOC122332958
XM_043226184.1 mRNA upstream 274986 1711295 ~ 1727693 (+) True LOC122329718
XM_043227012.1 mRNA upstream 302016 1694985 ~ 1700663 (+) False LOC122330144
XM_043235918.1 mRNA downstream 120787 2131218 ~ 2140821 (+) True si:ch211-106h11.3
XM_043230556.1 mRNA downstream 149915 2160346 ~ 2165693 (+) True LOC122333054
XM_043235185.1 mRNA downstream 251179 2261610 ~ 2267508 (+) True LOC122341668
XM_043235186.1 mRNA downstream 257157 2267588 ~ 2270464 (+) True LOC122341669
XM_043230952.1 mRNA downstream 282872 2293303 ~ 2296045 (+) True LOC122333376
unassigned_transcript_275 other upstream 136894 1865713 ~ 1865785 (+) True trnar-ccu_2
unassigned_transcript_274 other upstream 351951 1650656 ~ 1650728 (+) True trnar-ccu_1
TU23775 other upstream 356147 1644778 ~ 1646532 (+) False G16003
TU23777 other upstream 356251 1644778 ~ 1646428 (+) False G16003
TU23799 other upstream 379285 1620931 ~ 1623394 (+) True trnar-ccu
TU24128 other downstream 46250 2056681 ~ 2063784 (+) False G16222
TU24131 other downstream 46250 2056681 ~ 2063784 (+) True G16222
TU24132 other downstream 48246 2058677 ~ 2063784 (+) False G16222
TU24133 other downstream 101606 2112037 ~ 2114339 (+) True G16223
TU24191 other downstream 150414 2160845 ~ 2165614 (+) False LOC122333054

Expression Profile