RNA id: XM_043227073.1


Basic Information

Item Value
RNA id XM_043227073.1
length 1148
RNA type mRNA
GC content 0.55
exon number 8
gene id LOC122330213
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1867624 ~ 1870610 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTGTGATGTGGAATGTCAGTTTATTATGTGTTTCTGTAACGAGCGACTAATAATAATGACTGGTGTGTGTTTCAGGCAGATTTTTGATCATTACACCAACATGTACCCGCAGCTGATCGAGAATCCCAAAACACTGCTGGCTGTCAAACGCTTCATGGCgaaGCAGGACGACTGGTCCCGGGCTCAGGTGAAGAGTAACTCGTCTGATCCTCTGTGGATTCACACGGGCCTGATCCTGGCTCAGCTGGACGGGCTGCAGGCCGGAGTCACCGACTGGGCCAAACAACACGGGAGGGCGCCTCTGTCTCAGTTTGCCTTCCAGTTCCTGAACGCGGTCGGTGATCTGCTGGATCTGATCCCGGCGCTGGTTCCTCACGGGACGTCCAGCTTGAAGCGGTATAAAGCTCCTCCGATGGGCCACTGCTCTGCGCTCATAAAGATGTTGCCTGGCTTTGAGAACCTGTTGTTCGCTCACTCCAGCTGGTACACATACGCTGCCACCATGCGCATCTACAAACACTGGGACTTCAGACTGAGTGAACCACACACGGCCACCGGGACTCTGTCCTTCAGCAGCTACCCTGGTTTCCTGGTGTCTCTGGATGATTTCTATCTGCTGGGCAGCGGCCTGATGATGACTCAGACCACCAATAACGTCTTCAACACCTCTCTGTACTCCTTCATCTCTCCTGCCAGCCTGTTCTCCTGGCAGAGGGTTCGACTGGCACACACGCTGGCAAAGACGGGAGAGCAGTGGGCCAAAACCTTCTCCAGATACAACTCTGGGACGTACAATAACCAGTACATGGTTGTGGACACGAGTAAAGTGAATCTGGGCAGCAGTCTGGAGGACGGAGCTCTGACGGTGGTGGAGCAGATCCCGGGGCTGGTGGAGTATTCGGATCAGACGCAGGCGCTGCGCAGAGgttACTGGCCGTCCTACAATGTGCCGTTCCACCGCAAGATCTATGATCTGAGCGGATACGAGGAGATGTGGAAGCAGTACGGCGAGGAGTTCTCATACGACCTTTGCCCTCGCGCTAAGATCTTCCGCAGCGACCAGTCGTCCGTCAGCGACCTGAACTCCCTCAAACACATCATGAGATACAACGATTATAAGAGCGACCCGTGACTTCGCAGGGCGTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23770 lncRNA upstream 2395 1619907 ~ 1865229 (+) False G16002
TU23827 lncRNA upstream 11940 1854895 ~ 1855684 (+) True G16033
XR_006248080.1 lncRNA upstream 41307 1824790 ~ 1826317 (+) True LOC122330751
TU23825 lncRNA upstream 41576 1825084 ~ 1826048 (+) False LOC122330751
TU23788 lncRNA upstream 162948 1689042 ~ 1704676 (+) True G16008
TU23807 lncRNA downstream 670 1871280 ~ 1873520 (+) True G16017
TU23808 lncRNA downstream 670 1871280 ~ 1891027 (+) False G16017
XR_006248070.1 lncRNA downstream 72079 1942689 ~ 1943729 (+) True LOC122330717
TU24127 lncRNA downstream 153738 2024348 ~ 2320138 (+) False G16222
TU24151 lncRNA downstream 157784 2028394 ~ 2030843 (+) True G16233
XM_043230436.1 mRNA upstream 137627 1728370 ~ 1729997 (+) True LOC122332958
XM_043226184.1 mRNA upstream 139931 1711295 ~ 1727693 (+) True LOC122329718
XM_043227003.1 mRNA upstream 166961 1693056 ~ 1700663 (+) False LOC122330144
XM_043227012.1 mRNA upstream 166961 1694985 ~ 1700663 (+) False LOC122330144
XM_043226996.1 mRNA upstream 166961 1695222 ~ 1700663 (+) True LOC122330144
XM_043230813.1 mRNA downstream 55137 1925747 ~ 1941793 (+) True LOC122333258
XM_043226579.1 mRNA downstream 132069 2002679 ~ 2010431 (+) True rangap1a
XM_043235918.1 mRNA downstream 260608 2131218 ~ 2140821 (+) True si:ch211-106h11.3
XM_043230556.1 mRNA downstream 289736 2160346 ~ 2165693 (+) True LOC122333054
XM_043235185.1 mRNA downstream 391000 2261610 ~ 2267508 (+) True LOC122341668
unassigned_transcript_275 other upstream 1839 1865713 ~ 1865785 (+) True trnar-ccu_2
TU23769 other upstream 2395 1619312 ~ 1865229 (+) True G16002
unassigned_transcript_274 other upstream 216896 1650656 ~ 1650728 (+) True trnar-ccu_1
TU23776 other upstream 218130 1559387 ~ 1649494 (+) False G16003
TU23778 other upstream 218130 1616236 ~ 1649494 (+) True G16003
TU24128 other downstream 186071 2056681 ~ 2063784 (+) False G16222
TU24131 other downstream 186071 2056681 ~ 2063784 (+) True G16222
TU24132 other downstream 188067 2058677 ~ 2063784 (+) False G16222
TU24133 other downstream 241427 2112037 ~ 2114339 (+) True G16223
TU24191 other downstream 290235 2160845 ~ 2165614 (+) False LOC122333054

Expression Profile