RNA id: XM_043227104.1


Basic Information

Item Value
RNA id XM_043227104.1
length 1409
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC122330224
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1154623 ~ 1157439 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTTTTCTCATTGGTTAAAAAGTCCCCCTCTATGTCCGTCACTGGTCAGGTCTTTCACGATCAAAGGCTTTGAGTCATGGGAACGAGCGTGGCTGTGAAGATCTCTGCTCTGCTTTGCGTTTTTCTTCTTCATGGCTCTCCGCCTGTACAAGCAGAGAAGCACTCGCTGTACTACATTTACACGGCTTTGTCCAAACCGGTCGATCTGCCGGGCATCTATCAGTTCACTGCCACGGGTCTGCTAGACGACAGACAGATCGACTATTACGACAGTCAGGAACAGAGGAAGACTCCCAAACAGACCTGGATGAAGGAGAAACTGCAGGAGGATTACTGGGTAAAAGGCACCCAGTCGAGAAAGAGCAAAGAACAGTGGTTCAATGTGAACATAGGCATCGTGATGAAACGCATGGGGCACAACGAATCAGATCTTCATGTTCTTCAGTGGAGAGTTGGCTGTGAAGCTGAGAAGCAGGGAGATGGTGTGACGTTTTCCAAAGGCGCTAGCGAGTACGGCTACGACGGGGAggattttttgtcttttgatatATTAGAGTCTCGGTGGGTCGCCTCAGTCGATGCATCTTTACCAACCAGAAGAAAATGGGACAATGTACCAATCCTAAACCAGTACACCAAAGGCTACCTGGAGAGGGAGTGCGTGGACTGGATCCAGAAATTCACAGAATACAGAGACGAGGAGCTCGGCTCCCCTCCAGAAGTTCACGCGTTCGCGAGGAAATCGACCCGAACCCGGCTGAAACTCACCTGTGCGGTCACCGGCTTCCACCCCGGAGAAGTGACGGTGATCGTTAGGAAACATCTCACACCTCTGCCTGAAGATGAATCCACAGGAATCAGACCGAACCACGACGGGACCTACCAGATGAGGAAGAGCGTGGAGATCGACAGGGACGAAGAGGCGGAATACGACTGTGTCGTGATCCACGAGAGCTCGAAAGACCCGACTATCGTCAAATGGGGACTGGAGAAAACTACTCAATCGCCGACTGCCAGTGCCGCTTACGCTGGAGAACCGTCTGGCGACGCTCCAGGCGGCCGGCCAGCTGTGTtcataatttctctctctctcatatatctTCTCATCTGGACATACTGAAGAGACGCACTCAAGGACACCTTACAGCAGGAGCGGCAAATCATTCACTTATTTCTAATACATTATAATGAAAAACAGACACATCTAACTAATTTCACTGATTTATATGTCATTTATAGACGTATTCATGCTATTTCTTTCACTAGACTgagtattattatttcttcacACTGCTAGAATCACAATCAAGTTGAATAATGTCTGCCACTCTTTAATTATCTGAATGATTAAATGACTATATTTGTAAACGTTTTGAGATCAGCCATTAAAACCTATCTAGCAACCTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23652 lncRNA upstream 1395 1152825 ~ 1153228 (+) True G15911
TU23621 lncRNA upstream 20831 1120640 ~ 1133792 (+) True G15886
TU23622 lncRNA upstream 23148 1129892 ~ 1131475 (+) True G15887
TU23624 lncRNA upstream 31323 1121340 ~ 1123300 (+) True G15889
TU23617 lncRNA upstream 36957 1117223 ~ 1117666 (+) True G15883
TU23669 lncRNA downstream 55886 1213325 ~ 1213628 (+) True G15925
TU23671 lncRNA downstream 57877 1215316 ~ 1215605 (+) True G15927
TU23674 lncRNA downstream 82907 1240346 ~ 1241047 (+) True G15929
XR_006248071.1 lncRNA downstream 121824 1279263 ~ 1281171 (+) True LOC122330723
XR_006248053.1 lncRNA downstream 225809 1383248 ~ 1384894 (+) False LOC122330682
XM_043227606.1 mRNA upstream 49444 1102861 ~ 1105179 (+) True LOC122330518
XM_043227045.1 mRNA upstream 52523 1090492 ~ 1102100 (+) True LOC122330159
XM_043226462.1 mRNA downstream 2798 1160237 ~ 1176071 (+) True LOC122329844
XM_043226470.1 mRNA downstream 2798 1160237 ~ 1176071 (+) False LOC122329844
XM_043227216.1 mRNA downstream 18793 1176232 ~ 1179341 (+) False LOC122330304
XM_043227223.1 mRNA downstream 19133 1176572 ~ 1179341 (+) True LOC122330304
XM_043226742.1 mRNA downstream 30579 1188018 ~ 1198038 (+) True kcnj4
TU23529 other upstream 105363 1048003 ~ 1049260 (+) False LOC122330066
TU23504 other upstream 145320 1005995 ~ 1009303 (+) False LOC122330135
XR_006248020.1 other upstream 385651 754431 ~ 768972 (+) False LOC122330463
TU23155 other upstream 519014 625365 ~ 635609 (+) False LOC122330407
TU23138 other upstream 597542 553698 ~ 557081 (+) True G15563
TU23688 other downstream 133530 1290969 ~ 1291564 (+) True G15939
TU23709 other downstream 233300 1390739 ~ 1392850 (+) True G15955
XR_006247969.1 other downstream 238408 1395847 ~ 1402168 (+) False LOC122330032
TU23776 other downstream 401948 1559387 ~ 1649494 (+) False G16003
TU23773 other downstream 458269 1615708 ~ 1646532 (+) False G16003

Expression Profile