RNA id: XM_043227139.1


Basic Information

Item Value
RNA id XM_043227139.1
length 2482
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC122330255
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1680314 ~ 1686977 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATGAATTCATTCACACTCAGCAGTGAACATGTAGTGTGCACTGTAAACCTAGTAAATAACACTCGCCGGGAATCGTTTATCTTCCGGTTTCGAGAAAGACTGTTTCTATTCTTATGCGTTCACTCATCTCGAGTCATTTCGAGACTCGCTTGTATACATGcaattgattttttattttattttacgcCTACTTCATCTGCTGGACGAGGAGACATGGATGTGAAGTGTCGTGTCGCCGGAGGTCGCAGTGTCTTGTGCTTGTTTGATGTGGACGGAACGCTGACCCCCCCGAGAGAGAAGATCGACCCTGAGCTGGACGATTTCTTCCAGGCCTTGAGAAAGAAGGTGAAGATCGGCGTGGTGGGCGGTTCAGATTATTCCAAAATCGCAGAACAGCTCGGAGACGGAGATGAAGTCATACGCAAATTTGACTACGTCTTCGCAGAGAACGGAACCGTGCAATATAAAGACGGCAAACTCATCTCTAAACAGGCCATTCAGAATCATCTGGGCGAGGAGTTACTGCAGGACCTCATCAACTTCTGCCTCAGCTACATGGGGCTCATCAAGCTACCCAAGAAACGaGGGACGTTCATTGAGTTTCGTAATGGCATGATCAACATCTCACCCATCGGACGCAGCTGCACTCTAGAAGAGCGGATCGAGTTCTCTGAAATCGACAAGAGAGAGAAGATACGAGAGAAGTTTGTGGCGGCTCTGCAGAAGGAGTTTGCTGGAAAAGGCCTGCGGTTCACCAGAGGGGGGCTGATCAGTTTCGACATCTTCCCGGAGGGCTGGGACAAACGCCTCTGTCTGGAAGTCCTGGAGCAGGAAGGACTGGACGCCATCTACTTCTTCGGCAATGAAACTACATTGGGTGGAAACGACTACGAGATCTTTGAAGACCCTCGGACGATCGGCTTCTCCGTCTGCTCTCCTGAAGACACGGCGCGGCTCTGCAGGGAGATGTTCTTTAAAGCTCCACCCAATGAGGCGTGAAGCGTGTGTTCGCTGCACGGACCCCAGACTGCCCGCGTGCGGCCCCTGCCGGCCCCCGAGAACCAGCGGACCGAGACAGAACCACTGCTGGGCCGCAGACTCAAGGGACCGCATGTAAATATCACTCACAGAGACTCGGCGTGTTCAttttttggaacattttaatggttttccaaatattcattttaaagatttaccctctttttttataataaaagctgttttgctGCAGCCGCGTTCACACTGCGACATTTCCGGAGTGACATCTGCGTACGAATCCTCTGAATGAGGCACAGGACTCGCtcaagaagatttttttttttttttaccaaagtaTTAGCTGTTAGTTATCAGTTAGAGGCTTGTTTGTTTACCAGGTGCGCTCCGTGCAAAGGtagcatttttttgtacagtgtatcgtaaaataatgcattttaactgcTTTACTTGAAAATAATTGCCCATCCACTCTTAATATGCCGAAACCAGTCCTTTAACGTTTCGTGTCTCGTCATGTTGGCAATTACAAACATCTCCATCCATATCTTCCATACCTTTTAGCATGCGTTTAGCATTTCTGTCGCGCAGCAGTTGTCGGATATCAGATGTTCAGCCGAAAGCTACATCTCAGCTCCCATTCTTCAACCGTTAGAACTTCTGCTCGCCTTCTTCGAACGGTAAACCCCACCTCCTTTGATTTTGATCGGTCATTTCAATCGTCCGACACTGAAGAGCCCCCTTATAGGTAGAAAAAAATTCTTTCCAGAGCATGCGATCTTTAACAGATCATTACAGCTAGTTCCCAGACAGCGCGTCTGTTGAAGATGTCGGTTTTACATACATGCTAAATCATAAACCCCTTAAAGACCTCTAACAGACGGATGAGGTGTAAATGGAGCCGGATTAGGAGTGACTCCGGATCGGCGGTGTGTGAACGCGACTCAGTGCAGTGGATCTGCTCCACGTTAAGTTTTGTCGTGCTTTTCCGAGATGTTTGCGCTCATTTCTGGGATTGTTTATCCTCTCCTGTGCTCTCGGACTGGACTCCGAGGTGTTTAATGAACGGTCTGGTGTTTGTATCGCGAGACAATATAAGATTGACTGAAACGGGTTTGAAGCCGAGTTAATTAATAGTTGGTTCGTTTGTTGCATCGCTCTCAGAACGGCTTTAGATGTGACTTTTACGTGTTAATCATTCCAGACATCGCTCAAACACTCCCTCCATCCCTGAAAACATGGTGCTGATCCCAGAGATTTCCAgggcattgtaaaaaaaaaaatttttttaaaccagataTCAAGTATTTATAATTCAGAATCCATGTTCTGTTTAATCTCATGCTATGAATGTCGCTTCATGTCTGACGGCATAAATGCACTTTAACTTGAATTGATTCATATCGAAAATTACACTAACGGTGTAAATGGTGCCGGATTAAAGAAACAATGTGACTTTAATTCTATTAAACTCATTTGAGTATC

Function

GO:

id name namespace
GO:0019307 mannose biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004615 phosphomannomutase activity molecular_function

KEGG:

id description
K17497 PMM; phosphomannomutase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23779 lncRNA upstream 64785 1615160 ~ 1615529 (+) True G16004
TU23696 lncRNA upstream 189535 1485571 ~ 1490779 (+) True G15944
TU23731 lncRNA upstream 238572 1441259 ~ 1441742 (+) True G15972
TU23726 lncRNA upstream 265115 1414215 ~ 1415199 (+) True G15967
XR_006248052.1 lncRNA upstream 295550 1383248 ~ 1384764 (+) True LOC122330682
TU23788 lncRNA downstream 2065 1689042 ~ 1704676 (+) True G16008
TU23818 lncRNA downstream 83780 1770757 ~ 1979709 (+) True G16027
TU23819 lncRNA downstream 90009 1776986 ~ 1989269 (+) True G16028
XR_006248080.1 lncRNA downstream 137813 1824790 ~ 1826317 (+) True LOC122330751
TU23825 lncRNA downstream 138107 1825084 ~ 1826048 (+) False LOC122330751
XM_043227680.1 mRNA upstream 16716 1660521 ~ 1663598 (+) True LOC122330554
XM_043226055.1 mRNA upstream 78660 1590678 ~ 1601654 (+) True LOC122329650
XM_043226042.1 mRNA upstream 100493 1567345 ~ 1579821 (+) True LOC122329645
XM_043227300.1 mRNA upstream 114372 1558351 ~ 1565942 (+) True cdc42ep1b
XM_043226155.1 mRNA upstream 154838 1517508 ~ 1525476 (+) True LOC122329687
XM_043227003.1 mRNA downstream 6079 1693056 ~ 1700663 (+) False LOC122330144
XM_043227012.1 mRNA downstream 8008 1694985 ~ 1700663 (+) False LOC122330144
XM_043226996.1 mRNA downstream 8245 1695222 ~ 1700663 (+) True LOC122330144
XM_043226184.1 mRNA downstream 24318 1711295 ~ 1727693 (+) True LOC122329718
XM_043230436.1 mRNA downstream 41393 1728370 ~ 1729997 (+) True LOC122332958
unassigned_transcript_274 other upstream 29586 1650656 ~ 1650728 (+) True trnar-ccu_1
TU23776 other upstream 30820 1559387 ~ 1649494 (+) False G16003
TU23778 other upstream 30820 1616236 ~ 1649494 (+) True G16003
TU23773 other upstream 33782 1615708 ~ 1646532 (+) False G16003
TU23775 other upstream 33782 1644778 ~ 1646532 (+) False G16003
unassigned_transcript_275 other downstream 178736 1865713 ~ 1865785 (+) True trnar-ccu_2
TU24128 other downstream 369704 2056681 ~ 2063784 (+) False G16222
TU24131 other downstream 369704 2056681 ~ 2063784 (+) True G16222
TU24132 other downstream 371700 2058677 ~ 2063784 (+) False G16222
TU24133 other downstream 425060 2112037 ~ 2114339 (+) True G16223

Expression Profile