RNA id: XM_043227300.1


Basic Information

Item Value
RNA id XM_043227300.1
length 2454
RNA type mRNA
GC content 0.51
exon number 3
gene id cdc42ep1b
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1558351 ~ 1565942 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGGAGTGACCTCCAAGAACCTGTTAGCATTTAGATCATTTTACAGGTTCGCGAGTCTACTGTAAAATAGcgtgattgtatttatttttctgcttcTTCGAGTCTTTACTGAACCAAACAATCCTGTGATCGTGTGTGATGATTCCTCCAGTGCGCATGCGCGCCGCCCTCCTGTCTGTCCGCGCGCGGAGCGGAGACGCGACCCACGTTTATTCCTCAAAACTTTGCTATTATTCGGGTTTAAGgaCGCTCGTGAAGGGAAAATACTGACTGACGGGCGGCTAAGTGGATTGAGACGGTCCGtcgagagaaagaagaagagaagtgagtgagagagagagagagagagggagaacgGGGACAAATAATCCGGCTAATCCAGGCCAATCCCAGCCGTTCAGACTCCTCTAGAGCCGCAGACAAAACACGGAGGATCACGCTCGCGTCTGGTGTGCTCTGGACAGGCTGTTTTGGGGGATCCTGGGATGCTGAAGGCCTGCGGCGGGATTCATAAACGCTAGAAACAACAGATCCCAGCAGGACAGAGCTGAAGGAAAAGGACGATGCTGGTTGCCACTCATCTGACAAAACAGGAGAAACGGCACCCGGCTTCGGTGCGGACATGAACTCAGACGCGGTTCTAAAGGAGATCTAAAAGAGGAGATGTCTGGAACAGATGTTCGGAAGACGTTCCGCTTCGTGTAAATCTGAGCAAGTCTCTAAAACCGCGTTAGCAGTGGTTTAGCGGACCTTTTGAAAGGATGGCGACGTGTTAGACACCGAATCGTGTTTTTCCGGCTATAGGAGAGCGTGCGAGCTTTCTGTGACCACTCGAAGGTGTTTAAATTCTTCGTAAATCCTATTAGGCTTCTTTAACAGGTTATTTTTAAACCCGAGATGGGCAGCGGCTCACAGACCGATGGAGCTGATACCGGCGTGTGAACACGTAAAAACACTCGCGTACTCGTAGCAAGTAGATTCGATCTGAGAGTTTGTCATAACGATGCTCTTTAAAACAGTCTTCGGTGCCATTCTTGCTTTGAgagcttttgtgtttttgctgctCATCCACAGAGGAACCCTCAAGTAATTGGTCAAGTAATTATTTTCCAATTTAGCATTTAGCGTTTGACATCTGAGGAGCCCATCAAGTCGAACTTGGTCATTTAAAACACGTTTCTCGTCATGAGTCTGGGAAAGTTGCCGGCGATCAAAGGCCTGGTGTCCACGTCCCACGGCAAGCGGCGGTTTAAGAGCGACCTGTCGGTGGACATGATCAGTCCGCCGCTCGGCGACTTCCGCCACACGATGCACGTGGGCCGCGGCGGGGACGTCTTCGGCGACACTTCGTTTCTGAGCAACTACGGCGGATCGAGTCACAGCGATGGCCTGCGGAGCCCGGACTCGCCCTCCGGCCCCAAACCGTCGCGGTTTTTGTCGAGAACGCTGCAGCACGTGCGGAAGACGCCTCTGCCGCGGCTCAGAGGCGGCTCGCGGGACTTCTCGTCCCCTCCGCCACACGTCTCGCCCATCATTAAAAACGCCATCTCTCTGCCTCAGCTCAACATGACCGGCGGCCTGATGAGGGCGCTGCTGCCCACCTCCACCAGCTCCCCGGACGAGCCCCTCTGCTCCTACGCTCTTCAGTCTGGTTTCATCACGCTGCCTCGTTTATCTCGACTCGACCCGAGCTTGGAGGAGACGTCCGAGGCGCTCAGTCGACGGAGCTCCTTCCCCGAGAACAGCGAGGTCTCGTTGGCGCGGTCCGACTCGCTCTCGTCCTTCACGGTGGACCTCGGGCCCTCCCTCATGAGCGAGGTTCTGGAGATGATCGACAGCTCCTGCGGCCTCACCGGGAGCCGCGAGggcgaggaggaggagagcgAGGCAGATCAGACGGAGGCTCCGGTCAGGCGTCCCATCGGAGCGGACGCGGCCATCGAGCCCAGGAGGTTCCGGCAGGCCGCTAGCATGCTGGCGCGTCACTTTGGAGGAGGAAGATCTGAAGAAGAGCGCCAGAGACCTTCATCCTTTAGACACAGCAGGACACCGTACAGCTTCACCGAGGCGGAGGAAGAAATCAAAGTATGAATCAGAAACTACGCATACGgattatactaaaaaaaactagCTTGATTTCAAAgacaatttagtttttaatatgacctttatttaataaaatgagttTTGGACATATGAATCTGTAAACGAGCATCATTCAGACGAACAGATCTTTAGCTCTACTTTTCAGTCAAGTATTTTCAACGAATCTGTCCTGTAcgtgttttacatttatatttttatgtgcatatgCATTTACAAAACCAAAAGCGCAACACAAATCGACAGTAGATCTACAAAAAatcctttatatattttaacagcatGATTTGTCAAGTTTTAAACTTGGTACTGacagaaatatgtatttataagttgaaacaattaatgtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23696 lncRNA upstream 67572 1485571 ~ 1490779 (+) True G15944
TU23731 lncRNA upstream 116609 1441259 ~ 1441742 (+) True G15972
TU23726 lncRNA upstream 143152 1414215 ~ 1415199 (+) True G15967
XR_006248053.1 lncRNA upstream 173457 1383248 ~ 1384894 (+) False LOC122330682
TU23779 lncRNA downstream 49218 1615160 ~ 1615529 (+) True G16004
TU23770 lncRNA downstream 53965 1619907 ~ 1865229 (+) False G16002
TU23788 lncRNA downstream 123100 1689042 ~ 1704676 (+) True G16008
TU23818 lncRNA downstream 204815 1770757 ~ 1979709 (+) True G16027
TU23819 lncRNA downstream 211044 1776986 ~ 1989269 (+) True G16028
XM_043226155.1 mRNA upstream 32875 1517508 ~ 1525476 (+) True LOC122329687
XM_043226144.1 mRNA upstream 41940 1508493 ~ 1516411 (+) True LOC122329679
XM_043226504.1 mRNA upstream 95098 1456950 ~ 1463253 (+) True LOC122329871
XM_043226042.1 mRNA downstream 1403 1567345 ~ 1579821 (+) True LOC122329645
XM_043226055.1 mRNA downstream 24736 1590678 ~ 1601654 (+) True LOC122329650
XM_043227680.1 mRNA downstream 94579 1660521 ~ 1663598 (+) True LOC122330554
XM_043227139.1 mRNA downstream 114372 1680314 ~ 1686977 (+) True LOC122330255
XM_043227003.1 mRNA downstream 127114 1693056 ~ 1700663 (+) False LOC122330144
XR_006247969.1 other upstream 156183 1395847 ~ 1402168 (+) False LOC122330032
TU23709 other upstream 165501 1390739 ~ 1392850 (+) True G15955
TU23688 other upstream 266787 1290969 ~ 1291564 (+) True G15939
TU23529 other upstream 509091 1048003 ~ 1049260 (+) False LOC122330066
TU23504 other upstream 549048 1005995 ~ 1009303 (+) False LOC122330135
TU23773 other downstream 49766 1615708 ~ 1646532 (+) False G16003
TU23778 other downstream 50294 1616236 ~ 1649494 (+) True G16003
TU23769 other downstream 53370 1619312 ~ 1865229 (+) True G16002
unassigned_transcript_273 other downstream 54981 1620923 ~ 1620995 (+) False trnar-ccu
TU23799 other downstream 54989 1620931 ~ 1623394 (+) True trnar-ccu

Expression Profile