RNA id: XM_043227493.1


Basic Information

Item Value
RNA id XM_043227493.1
length 1962
RNA type mRNA
GC content 0.42
exon number 15
gene id LOC122330463
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 754430 ~ 775534 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGACCAGAAAAACAGCACAAGGATTATCACAAAAGAGCTCATTTCTTAAACAAGAACATTACAGATGGAAACTTCTCCCTCCGGCTGAAAAACCTGAGAACTGAAGATGAAGGGGTTACACATGTAACGTTTACAGCGaccaggagtgtgtgtgttcagtcagAAAAGAGCTGAAACTGaGATTCTCTGTGAAACCTTCGCATTACATGACCGTTCCTCTTGGATCTTCAGTGGTTTTGCCCTGTTATCATAATAAACCCTCTGGAACGAGCAATCTGAAGGTGGAGTGGAGAAGAAACGAGTCTTTAGTTCATCTGTATCAGGACGGAGAGAGTCGAGCAGAAGCCCAGCAGCAGGATTATCAGGACAGAGCTCATTTCTTCACTGATCAGATTCAACATGGAAacttctctctccttctttatGATCTGAGATCTGAAGATGAGGGACAGTACACATGTACAGTTCACACTGGCTCTTTCTGGAGTCGCTGTTCAACTAATATAAACTTGGTACTGAAACTATTGGAACCAGTCTTCCGTCTTCAGATGTTTCTGGTCTTCTGTCCAAATGTTCTGATGTTTCTGGCGTTTGTTTTCTGGGGTGTTTCTGAAGggtCTGTGAGTGAGTCGGTCTGTTGTTGCGCTCTTTATTTTCTGAGGCCTCTCCTGCTGCTCTGGACGGCTCcgtatatttttcatttcacagGCACAGTTAAAACATTGATTCTGAACTACAGTTATGTGGCAGAATATGTTGTTGTCTTACTTGTTGTGTATTCAGACATCATACGAGCAGCACAAAGGTCATCAGGAGCAGACTGAAAACAGAACAgtctcagaaacacacagactgtcgttaaaaatacagtactCTCTCTTCACAAGTGCTTGGCAAAGCTTCTGAGCTACGCTGAGTTTGACAGAGCCGTGATCATCGCCCTGTTTGTGTTGGTGTTTGTGTTCTGCCTCTGCAAAGCCTTTTACATTTTAGCGACAGAGGTCTGGAAGAAAACCGGACAGGCACTTAAGATCTTTAATCTCGTGGCTGATATGATCTTTCAGATTCTGCCAACTTTACagttcatcctcctcttctacACGTTTGGATCGACCAGAGGAGGAttcatcataattattattgtaccACTGTTAATGCTGATGATGAATGACGCATGGCTTAAAAGATGCTATTATAGACTGGGCTTTTCACTTTCAGTTGTGAAGACAGTGATGATCATCTTCATATTGGTGACTAATGCAGTGATGATCGTTCTTTACATATTCACTCTGGACTATCAAACAGATGCGATTGGATGGGGCTGTGTTGTGATGTTTCTGCAGGTTCGCTGGACGCTCATGTTCTTCACAGATTATATTTATGGTTTTCTCAGATTGTCTCAAGGTTTTCAGCGTTATGTTGCTGTGTATGTGTTTGGATCAGTTGTTGTAGTTTTACTGAACTCTGCATTAATAACAGAAATGATCCTGAAATCAGcgTCTGGAGGCCGTGTGATGGCTGATCTCAGAttcattgtgtttctgtctgaGTGTTTATTTGCTGTATCTCTGATGATTTCTGCGTTCTTAGGATCCAAGATCACAGACTGTCTGAAGTCTTGTCAGGAGAAAGCGAGACCGAGACGAGTCAAAAGATCCCAGAAGAACCAGAACTCAGAAGAAGAGAGATTTCTCTGAAGACTGTAGATGCAGCGCTGTCTCAAACATGATAAAGAAACTATTACAGAGTGATCCTGAACACGTTAAAGCTGCTTTCAGTCAACGGATGGATTGTGAGCAGCAcctaacaaactaaaatatgtcCATCAGATCTGCACTGATCCACTGACGTGTTTTTTGGAAAtagctgtaaatatatattttgtatatatgtgtgtaaaatcttttttaaagacTGATTCTAGTAATACACATATTAAAATCTGTAATGGCCGATCTCAGA

Function

GO:

id name namespace
GO:0004175 endopeptidase activity molecular_function
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
ko03070 Bacterial secretion system

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23041 lncRNA upstream 56721 695997 ~ 697709 (+) False LOC122330711
XR_006248068.1 lncRNA upstream 56872 695751 ~ 697558 (+) True LOC122330711
TU23045 lncRNA upstream 57599 695997 ~ 696831 (+) False LOC122330711
TU23164 lncRNA upstream 76335 677066 ~ 678095 (+) True G15586
TU23110 lncRNA upstream 231758 520750 ~ 522672 (+) True G15550
XR_006248084.1 lncRNA downstream 6449 781983 ~ 783076 (+) True LOC122330767
TU23167 lncRNA downstream 17716 793250 ~ 815066 (+) False LOC122330666
XR_006248050.1 lncRNA downstream 32775 808309 ~ 815075 (+) False LOC122330666
XR_006248049.1 lncRNA downstream 32830 808364 ~ 815075 (+) False LOC122330666
XR_006248048.1 lncRNA downstream 33109 808643 ~ 815075 (+) True LOC122330666
XM_043227358.1 mRNA upstream 717 743953 ~ 753713 (+) True LOC122330397
XM_043226129.1 mRNA upstream 43029 699715 ~ 711401 (+) False LOC122329668
XM_043226120.1 mRNA upstream 43029 700578 ~ 711401 (+) False LOC122329668
XM_043226110.1 mRNA upstream 43029 700756 ~ 711401 (+) True LOC122329668
XM_043229559.1 mRNA upstream 115131 638828 ~ 639299 (+) True LOC122332267
XM_043229640.1 mRNA downstream 7876 783410 ~ 792668 (+) True LOC122332312
XM_043226920.1 mRNA downstream 69069 844603 ~ 846445 (+) True LOC122330100
XM_043226983.1 mRNA downstream 230449 1005983 ~ 1009431 (+) True LOC122330135
XM_043227127.1 mRNA downstream 235777 1011311 ~ 1013643 (+) True LOC122330251
XM_043229905.1 mRNA downstream 242173 1017707 ~ 1019352 (+) True LOC122332569
TU23155 other upstream 118821 625365 ~ 635609 (+) False LOC122330407
TU23138 other upstream 197349 553698 ~ 557081 (+) True G15563
TU22959 other upstream 455109 297895 ~ 299321 (+) False LOC122330774
TU22968 other upstream 678796 73544 ~ 75634 (+) True LOC122331567
TU23504 other downstream 230461 1005995 ~ 1009303 (+) False LOC122330135
TU23529 other downstream 272469 1048003 ~ 1049260 (+) False LOC122330066
TU23688 other downstream 515435 1290969 ~ 1291564 (+) True G15939
TU23709 other downstream 615205 1390739 ~ 1392850 (+) True G15955
XR_006247969.1 other downstream 620313 1395847 ~ 1402168 (+) False LOC122330032

Expression Profile