RNA id: XM_043228192.1



Basic Information


Item Value
RNA id XM_043228192.1
length 1362
RNA type mRNA
GC content 0.49
exon number 1
gene id ier2a
representative True

Chromosome Information


Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12678396 ~ 12679757 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ACGCTGTGGTTTACTTCGGTGAATGAAACGACTGTGAAAGTGGACTGAgctcaggggaaaaaaaacctaaacagtGTTTGTATATTCTCAAAAGTTAACTTAACAACTAAGAACAATGGATGTCACAGCAGAGGCCAAGCAGATTATGGTCCAGGCGTTGAGTAAAATGTACAGCTCGCGCACGCAGCGCGGTGGACTCCGTCTCCACCGGAGCCTGCTGTTGACGCTCGTCATGAAATCTGCAAGAGATATCTACCACTCTGCCCGGCTGACGAGCGATAAAAACGGGCAATTTGACACGCACGGTGTCACAGAGAGCGCAGCACAAGCAGAAGAGCCCATGGACACAACGAGCTCCACGACTGCACCTCTGCGCTCGACTGAGACGCAGGCTACCGAGGACGAGCAGAAGTCCGGACTCGAGGGTCATTCGCATCTACACGACCCCGCAGGACTCGCGGTGGACAAAGAGAACTGCAACCCAGCCGGAACGGACCGTCACTCTAGAAAGCGACGGAGCAAAACAGCCACTGACCCCGACTTTCTGCCGTGCAAAAAAGCCAAACTGGAGTTCGTGGAGGTCAGAGGAATTCTTCAGGCGACCCAGAGTAACTCCGCTAACTGCGGCAGGGCGCTGGACTCGCTGTCACTTGTGCCTATGCCAAGAACTATCGTCACGTTTTGAAAAAGACTATAAGAGCAATGGCACAACGCAGGGACAGTAGAGTGAACTTTGCGCACTACTGAGGGAAGTGAACCGTGGCGCGTATCTGCCGCCGAGTTCCTCCTGGAGCATTCAGGGCACTTGGCCGACGTGGAGAAGGAGTCTGTGAGTGATTGCTCACAGTGGAACAATGTGACAGCTGATTACTCATCGGAGAGAGGGTCGTTTGAAATTTGTGACTAATGGTGCTCGTTCAAACCACCGTGTTTCTCTTGACTCATGGCGTGACGCGGTACTATTACTTCTACAAGAGGTGTGACTGGGAGAACTTCCACGGATATTCAACATTGAACATTattgactatttatttattgaccgAGAATGGTTTCTggttgttctgtgtgtgtggttcGGACTGTATTCGTCTAAGGTGCTGTCAGGATTGTCCGGTCTTTACGCTGACTGGGATTTTTTTGTGGGCTTTTTGCTGGAAAATCCTTAAGCTGTTGTGAAACTTACTTACTGGTCCAAATGTAACAGACCACCTCAAAGCAAACCATTGTAGCCGGTCAGTCAGGTAACGACCAGGGATTTTCCAGCAGCTCAACGTGACATAAGCTACTAAAAACAGAGAGACATCGCGATGCTATGATGTAAATCTACCTCActtttgtacaataaaatattctaaaccgta

Function


GO:

id name namespace
GO:0070121 Kupffer's vesicle development biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0060271 cilium assembly biological_process
GO:0060026 convergent extension biological_process
GO:0005634 nucleus cellular_component
GO:0005515 protein binding molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU28784 lncRNA upstream 164675 12511926 ~ 12513721 (+) True G19326
TU28785 lncRNA upstream 164675 12511926 ~ 12513721 (+) False G19326
TU28700 lncRNA upstream 428399 12246208 ~ 12249997 (+) False LOC122341822
TU28736 lncRNA upstream 449876 12227935 ~ 12228520 (+) True G19287
TU28710 lncRNA upstream 543439 12132629 ~ 12134957 (+) True G19274
TU29145 lncRNA downstream 1501 12681258 ~ 12681565 (+) True G19579
TU29141 lncRNA downstream 3061 12682818 ~ 12686371 (+) True G19575
TU29234 lncRNA downstream 317460 12997217 ~ 13056733 (+) True G19656
TU29204 lncRNA downstream 326053 13005810 ~ 13096854 (+) True G19629
TU29202 lncRNA downstream 380403 13060160 ~ 13061606 (+) True G19627
XM_043225909.1 mRNA upstream 1733 12661681 ~ 12676663 (+) False LOC122329583
XM_043225918.1 mRNA upstream 1733 12662286 ~ 12676663 (+) False LOC122329583
XM_043225889.1 mRNA upstream 1733 12662299 ~ 12676663 (+) False LOC122329583
XM_043225899.1 mRNA upstream 1733 12662536 ~ 12676663 (+) True LOC122329583
XM_043235143.1 mRNA upstream 149593 12519837 ~ 12528803 (+) True gtpbp1
XM_043235716.1 mRNA downstream 90815 12770572 ~ 12772182 (+) True alkbh7
XM_043229474.1 mRNA downstream 215569 12895326 ~ 12900216 (+) True LOC122332168
XM_043229415.1 mRNA downstream 292720 12972477 ~ 12974627 (+) True LOC122332118
XM_043234624.1 mRNA downstream 423519 13103276 ~ 13107847 (+) True aldh3b1
XM_043234628.1 mRNA downstream 432720 13112477 ~ 13114856 (+) True si:dkey-204f11.64
XR_006250478.1 other upstream 149593 12519837 ~ 12528803 (+) False gtpbp1
TU28786 other upstream 164675 12511926 ~ 12513721 (+) False G19326
TU28787 other upstream 164675 12511926 ~ 12513721 (+) False G19326
XR_006249244.1 other upstream 365406 12303364 ~ 12312990 (+) False nbr1b
TU28690 other upstream 577544 12092603 ~ 12100852 (+) True LOC122342134
TU29192 other downstream 155624 12835381 ~ 12987913 (+) True LOC122332158
unassigned_transcript_277 other downstream 207400 12887157 ~ 12888061 (+) False LOC122332158
TU29613 other downstream 1018817 13698574 ~ 13702353 (+) False rbbp6
unassigned_transcript_286 other downstream 1233866 13913623 ~ 13913694 (+) True trnat-cgu
TU29734 other downstream 1369733 14049490 ~ 14053032 (+) True G19973

Expression Profile