RNA id: XM_043228260.1


Basic Information

Item Value
RNA id XM_043228260.1
length 633
RNA type mRNA
GC content 0.52
exon number 5
gene id prl
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11976888 ~ 11979058 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGACTCAAGGATCTAGACTGTACTTTGCAGTGGCTGTTCTGATGTGTGCATTTGTCTCCATTAATGGTGTGGGTCTGAATGATTTGCTGGAGCGAGCCTCTCAACTTTCAGACAAACTTCACTCTCTCAGCACCTCTCTCACCAATGACCTGGATTCTCACTTTCCTCCTGTTGGGAGGGTAATGATGCCCCGTCCGTCCATGTGCCACACATCCTCCCTTCAGATTCCCAATGACAAAGACCAAGCCCTGAAAGTCCCGGAGGATGAGTTGCTGTCTCTGGCTCGGTCACTGCTGCTGGCGTGGTCCGATCCCCTAGCCCTTCTCTCCTCTGAGGCGTCCAGCCTGGCACATCCAGAACGCAACACCATTAACAGCAAAACCAAAGAGCTGCAGGACAACATCAGCAGCCTGGGAGCAGGTCTGGAGCATGTCTTTAACAAGATGGGCTCATCTTCAGACAACCTGTCCACTCTCCCTTTTCACGTCAACAGCCTCGGCCAGGATAAAACCTCTCGACTTGTCAATTTCCATTTCCTGCTTTCCTGTTTCCGCAGGGACTCCCACAAAATTGACAGTTTCCTCAAAGTCCTTCGCTGCCGGGCAGCCAAGAAGAGGCCTGAAATGTGTTAA

Function

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28622 lncRNA upstream 2882 11967648 ~ 11974006 (+) True G19208
TU28625 lncRNA upstream 83232 11891903 ~ 11893656 (+) False syt5a
XR_006249757.1 lncRNA upstream 141635 11834772 ~ 11835253 (+) True LOC122338225
TU28582 lncRNA upstream 257309 11712609 ~ 11719579 (+) False G19184
TU28579 lncRNA upstream 258116 11715731 ~ 11718772 (+) True G19184
TU28679 lncRNA downstream 63826 12042884 ~ 12049422 (+) False prr12b
TU28685 lncRNA downstream 93661 12072719 ~ 12073073 (+) True G19255
TU28687 lncRNA downstream 95173 12074231 ~ 12074503 (+) True G19257
TU28697 lncRNA downstream 138285 12117343 ~ 12117909 (+) False pax10
TU28698 lncRNA downstream 139480 12118538 ~ 12118775 (+) True G19263
XM_043235435.1 mRNA upstream 83646 11885655 ~ 11893242 (+) True syt5a
XM_043235436.1 mRNA upstream 83646 11885655 ~ 11893242 (+) False syt5a
XM_043233685.1 mRNA upstream 91889 11878905 ~ 11884999 (+) False LOC122336110
XM_043233684.1 mRNA upstream 91889 11883609 ~ 11884999 (+) True LOC122336110
XM_043233688.1 mRNA upstream 96001 11878982 ~ 11880887 (+) False LOC122336152
XM_043225818.1 mRNA downstream 705 11979763 ~ 11982000 (+) True LOC122329533
XM_043225827.1 mRNA downstream 745 11979803 ~ 11982000 (+) False LOC122329533
XM_043230846.1 mRNA downstream 5488 11984546 ~ 11986105 (+) True LOC122333296
XM_043228732.1 mRNA downstream 16037 11995095 ~ 12013540 (+) True ap2a1
XM_043228740.1 mRNA downstream 16037 11995095 ~ 12013540 (+) False ap2a1
XR_006249731.1 other upstream 142964 11773201 ~ 11833924 (+) True kcnc3a
XR_006249728.1 other upstream 142964 11773201 ~ 11833924 (+) False kcnc3a
XR_006249729.1 other upstream 142964 11773201 ~ 11833924 (+) False kcnc3a
TU28236 other upstream 607136 11368893 ~ 11369752 (+) True G18949
TU28257 other upstream 641063 11333759 ~ 11335825 (+) True LOC122331261
TU28690 other downstream 113545 12092603 ~ 12100852 (+) True LOC122342134
XR_006249244.1 other downstream 324306 12303364 ~ 12312990 (+) False nbr1b
TU28786 other downstream 532868 12511926 ~ 12513721 (+) False G19326
TU28787 other downstream 532868 12511926 ~ 12513721 (+) False G19326
XR_006250478.1 other downstream 540779 12519837 ~ 12528803 (+) False gtpbp1

Expression Profile