RNA id: XM_043228332.1


Basic Information

Item Value
RNA id XM_043228332.1
length 2216
RNA type mRNA
GC content 0.53
exon number 5
gene id slc16a5b
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 7270950 ~ 7281036 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATCGGTGTTAGTTTGCTCGCGACTTAATAACCCGCCGGCTGCTTTTCTCGGAGTTCTCGCTGAGCCGCAGATGACCGACTGTAAATGAAGCAGTGAGGAGACATAATGACGGAGGGCGCGGAGGTTCGTCAGGCCCAGGCGACACGGAGCGGGCCGTCCTCTCTGCAGGCCGTCGAAACGGATCCTGGGTCCGAGGGGCCGGATCAACGGGAAGAGGACTCCCGCGGTGTTTCGGAGCAGCGGCGTCACTCGAGCGGAGGAGCGGAGGACGGCGGCAGAGGCCCGGTGGTGGCTCCCGATGGTGGCTGGGGCTGGGTGGTCGTCGGGGCCACTGTTCTGGTCTTAGCCATGACTCTGGCTTTCCCTTCTTGCATCGGGATATTTTACACAGACTTGCAGAACGACTTCCAGGCCAGCAACACCGAAACGTCGTGGGTGCCAGCCATCATGATGGCAGTGCTGCACGCGGGCGGCCCCATATGTAGTGTTCTGGTGGAGTGCCTCGGTTGCCGTGCGACAATAATTATTGGCGGGATCCTGAGCGGACTGGGAATGGCAGCCAGCTCATTTGCGCAGACAATGGTAGAGCTGTATATCACCGCTGGCATTATCACGGGAATGGGATTCTCTTTGTCTTTCCAGCCGTCGATCACAATGGTGGGCCACTATTTTGTGCGGCGCAGGGCGTTCGCCAACGCCTTGTCTTCCACCGGCACCGCGCTCGGCCTGAGCACCCTACCGTTGCTGGCTAACTATCTGCTCGGAAGCTTCGGCTGGCGGGGAAGCTTTCTGGTGCTGGGAGGCCTCCTGCTGAACTGCTGCGTTTGTGGGGCCGTGATGCGCCCCCTCGGGGCCAAACCAAAGACGGAAGCCAGAACCGGGCGGGCGAACAACAGCCAACTTAAAACCAACTGCCTTTCCATCACTCGCGAGCGAGAGGGTCTGAAGGGGCGCCTGCGGGCCACCCTCTCCACCGTCATGCCTTTCTTGCGCAGGCACATGGCTTTCGACCTGCTGTGCAGTAACCCGTACTTCTGCGCGTACGCTCCTCGGGTGTCCTGGATGATGCTGGGGTTCGTGGTGCCGCTCGTTTACCTGGTTCCCTATGCCACCGCTTACGGGATGGAGCAGGACCGAGCCGCTCTACTGATGGCCATCCTGGGGTTGATCAACATCACCGTCCGGCCCGCCGCCGCGCTGGTTTTTGGGCTGCCTCGTTTCCGTGGAAGCCATAACTTCGCCTACCTGTTCGCCGTGGCGGTGCTGATCAACGGAGTGAGCAACTGCATCTGCTGGATGGCGACGAGTTTCCCGGTACTGCTGGCGTATGTTATAGTGTTCGGGTTTTCTATGAGCCTCGTCGGCTCGTTGTTGTTCACCGTACTGATGGACACGGTCGAGATGAGCCGCTTCCCATCCGCCCTGGGCCTCATCAGCATTATGGAGAGCATCATGCTGCTGCTTGGCCCACCGTTAGCAGGAATCCTGGTTGACAGCACTGGCCAGTACTCCTATGTGTTCTTCGCCTGCAGTATCACCGGCTCCACGGCCGGTCTCTTCATCATGCTGTCCTTCTACTGGCtggacagacagaaacacagagaggtCAAGAGCTCCTTCGCTCGTAAAGACGTTAAGTCACTGAAGCCCGGCACTCAGACGACCGTAGACTGTGAATACAGTCCAGTGCCTTCACATGGTAACAGTATCAAAGACGTGGAGACTGATGTTTGATAAGTGTGTTTCACCAAACAGTACTCATTTTGTTCATTCAGTGCACGGCTAGTCTTTTCCTATCTAGTGGACAATCAGGTGTATTTCTCATATGTTATGTACACAGATGTAGTGCAGGAAGTTAAAGCAGAATGAACTTTTCTATTGCACGGTGCCACATGGGAACTTGAATCGCTTCAGATCGCCTCTCCAAACATTTAGAAAATCCGCTTTCAGTTATTACTTCAGGATTGCTAAGAAAGGCCGGCTGATGTTCGCATTCACATCACTTTTAATTTAGATCCTTCTGGGAGAGTCCGAGATGTGCcatgaattcttttttttatttattaatagatgccttaaattacaaatgttatatcttgtaaatgattttttttagttttgtctagatactgctttttaaaatcagtaacttatttatatatatatatatattttatgtattaaagaAAATTGTTGCTTTGTGTGTTGTCCTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26565 lncRNA upstream 4268 7194782 ~ 7266722 (+) True G17791
TU26448 lncRNA upstream 294725 6922196 ~ 6976265 (+) True G17704
TU26442 lncRNA upstream 367829 6902746 ~ 6903161 (+) True G17699
TU26412 lncRNA upstream 423384 6846938 ~ 6847606 (+) True G17683
TU26380 lncRNA upstream 565585 6705195 ~ 6705405 (+) True G17663
TU26584 lncRNA downstream 29138 7310174 ~ 7314152 (+) True G17808
TU26660 lncRNA downstream 111555 7392591 ~ 7392872 (+) True G17861
TU26661 lncRNA downstream 117203 7398239 ~ 7398465 (+) True G17862
TU26666 lncRNA downstream 128202 7409238 ~ 7409540 (+) True G17867
TU26695 lncRNA downstream 304437 7585473 ~ 7591526 (+) False LOC122331592
XM_043235263.1 mRNA upstream 19067 7241697 ~ 7251923 (+) True metrnla
XM_043235194.1 mRNA upstream 73302 7166534 ~ 7197688 (+) True tbcd
XM_043225616.1 mRNA upstream 106435 7160754 ~ 7164555 (+) False LOC122329403
XM_043225607.1 mRNA upstream 106435 7160754 ~ 7164555 (+) True LOC122329403
XM_043235962.1 mRNA upstream 113693 7148922 ~ 7157297 (+) True si:ch211-207b24.4
XM_043234879.1 mRNA downstream 13921 7294957 ~ 7300733 (+) True LOC122341489
XM_043225518.1 mRNA downstream 81880 7362916 ~ 7374464 (+) True hs3st3b1a
XM_043229148.1 mRNA downstream 302318 7583354 ~ 7585598 (+) False LOC122331592
XM_043228545.1 mRNA downstream 338614 7619650 ~ 7648946 (+) True ttyh2l
XM_043229085.1 mRNA downstream 368593 7649629 ~ 7655190 (+) True chmp6a
TU26266 other upstream 714240 6504915 ~ 6556750 (+) False G17590
TU26270 other upstream 714240 6504915 ~ 6556750 (+) True G17590
TU26037 other upstream 1075968 6192740 ~ 6195022 (+) False LOC122341437
XR_006250506.1 other downstream 374996 7656032 ~ 7725519 (+) False baiap2a
unassigned_transcript_276 other downstream 668725 7949761 ~ 7950417 (+) True LOC122331768
TU26829 other downstream 668768 7949804 ~ 7950310 (+) False LOC122331768
TU26831 other downstream 669818 7950854 ~ 7951364 (+) True G17985
TU26833 other downstream 679035 7960071 ~ 7962295 (+) False LOC122341279

Expression Profile