RNA id: XM_043228372.1


Basic Information

Item Value
RNA id XM_043228372.1
length 2442
RNA type mRNA
GC content 0.48
exon number 5
gene id nptx1l
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 27179078 ~ 27184592 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGCCACAACCAGATTACAACCAGCGCAAGCTGTCAGGCAGAGCTGCTAAAACCACCCGTCCAGAAGATACTTCGGGAACAGACGCGCCATGGAGGCTGGAGCGAGAGGGATGCACTGGAAACTTTTGATACTTTCTTGTCTTTTGGCGGACGGGATGAGCCAGGACTTCGGACAGACGCAGTTCATTTGCACGTCCGTGCCCAAGGATATGGACATATGCGCCGCTACGCTGCAGAACAGCGTGCCCGGGGAGGATCTCAAGAGCACGGTCATGCAGCTGAGAGAGACGGTGCTGCAACAGAAGGAAACCATCATGAACCAGAAGGAGACCATCAGGGAACTGACCTCCAAGCTGACGAGGTGCGAAAGTCAGAGCGCGTCCGAGCCCGGGGACGCGAGGGTCGGCGGACGGCGGAAGGAAATGGGCACCAAGAACACGATGGGGGACGTGTCGAGGGGTCCGACGGACACGCTGGCTCAACTCTCGCGGACTTTACAGTCGCTCAAACAGAGGCTGGAGAACCTGGAGcaattTAGCCGGAATAACAACTCCGTCCAGGCGAACAGCTTGAAGGATCTTCTGCAGACCAAAATCGACGACCTGGAGAAGCAAGTCCTGTCCCGCGTCAACGGTCTGGAGGAAGGAAAGCCCGGGCTGCGCAACGAGAGCGAGCAGCGCGGCCGCGTCGAGTCCACTCTCACCTCGCTGCACCAGAGAATAACCGACCTAGAGAAAGGCCAAAAGGAAAACAGACCACTGGATAAATTTCAGCTGACGTTCCCTCTGAGGACCAACTACATGTATGCCAAAGTCAAGAAGAGCCTGCCGGAGATGTACGCCTTCACCGTGTGCATGTGGCTCAAATCCAACGCCTCTCCAGGAGTGGGGACGCCTTTCTCTTATGCGGTCCCGGGACAGGCCAACGAACTGGTTCTCATCGAGTGGGGAAACAACCCAATGGAAATGCTCATCAATGACAAGGTCGCTAAGCTGCCTTTCCTGATCAATGACGGGAAATGGCATCACATTTGCATCACGTGGACAACCCGAGATGGAGTGTGGGAAGCTTACCAGGATGGCGTAATGAGAGGAAATGGGGACAGTCTGGCCCCTTACCATCCAATCAAACCACAAGGGGTATTGATTCTGGGACAAGAGCAGGATACTCTCGGTGGAGGGTTTGACGCCACTCAAGCGTTCGTCGGTGACATGGCGAATTTCCACATCTGGGACCGAAAGCTGTCCGTGGGAGAGATTTATAACCTGGCCACGTGCAGCAGCAAAGCACAAGTGGGGAACGTCTTCTCTTGGTTGGAAACCAGCATTGAGATCTACGGAGGAGCTTCGAAATGGACATTTGAGGCCTGTCGCCAACTGAACTAAAAGAGCACAGAAATCTCCCAACCAATGAGAGATATGAGTTTCCAGGTGTCTGTTACCAAATCATTCATCcttaaagaacattttcaaCCAAGAAAAAGCATAGACATCAAAGTCAACTGGAATTTTCTAGATATTTCAATATTTCGTGTGTCTATTAACACTTAAAACAATCacgtttttgtcatttatttctggaTCTTGAGGGCGTATGCCGATGTTGGTCTTAGCTTGAAGGCACCGTGGTTCTGCTCTTCTCTGGTTGTCTGTTGGGCAAAGCAACGCCTTACCGGAAAACTACTTAACACGATACGGCTCAGACTTCCATCTTTACAGCCTGGATCATTTGACCTCTTCCTTCGAACAGGAAGCCATATAGTCTCGCAGTAGATTTCTGAACCACTTAGGTTACTGTTCCCCATCAGGATTATTAGATAGATCTACCCACTGCCTGGGATACTCACTGTGAACTTCGGATGTAGAATGTAAAACGAGCAAAGCTGAgcgttcttttctttttaatcatgCTTTTGTTGTCTTATCACCTCCTGCTTCAAGCATTTtcgtttgttctttttttttttttttttgggttggtgtgtctgtgtatgtgcgtgtgtgggtttgtaaaaaaataacttgataATTGCCAACACATTTCAAGCCTGGGTGCCTTGGGCTGTTGAAAAGATCAGATCTCGACacatttgtcattatttgcAGTGTACTTCTAtttatctctttctttccttgTGTAACTACTGATACGTTATGTTGATTACACCTCGTAACAGTTCAAGCGGTTCGCGAGAATAGGCTGATAATTCAAAGTTGTTTTAATTGTGGCGTGTTCGGCAggtgtttgtatttttcaagGAATGTTACGTGTACAGAAAACAGCATGAACATCTAAATGCTGCAACAGCATCAaagaaaaactgcttttattagCTCATTTTGGGTTGAGATTTTATACTGTATTGTTATATGCTAAAAGCATGGCAGCACTGAAAGATGAAAAAGGTCtaaattttgtaataaaattgttatatcAAAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35362 lncRNA upstream 125284 27049688 ~ 27053794 (+) True G23713
TU35363 lncRNA upstream 125284 27049688 ~ 27053794 (+) False G23713
TU35394 lncRNA upstream 131553 27046938 ~ 27047525 (+) True G23733
TU35360 lncRNA upstream 134696 27029868 ~ 27044382 (+) True G23712
TU35388 lncRNA upstream 141433 27023328 ~ 27037645 (+) True G23727
TU35575 lncRNA downstream 64833 27249425 ~ 27252114 (+) True G23840
TU35606 lncRNA downstream 278407 27462999 ~ 27463302 (+) True G23869
TU35630 lncRNA downstream 288262 27472854 ~ 27475070 (+) True LOC122335648
XR_006248989.1 lncRNA downstream 288700 27473292 ~ 27475043 (+) False LOC122335648
TU35653 lncRNA downstream 346097 27530689 ~ 27533823 (+) True G23886
XM_043235754.1 mRNA upstream 159185 27007494 ~ 27019893 (+) True cdr2l
XM_043235752.1 mRNA upstream 171275 26990895 ~ 27007803 (+) False recql5
XM_043235750.1 mRNA upstream 171275 26990896 ~ 27007803 (+) False recql5
XM_043235751.1 mRNA upstream 171275 26990904 ~ 27007803 (+) True recql5
XM_043235753.1 mRNA upstream 171275 26990910 ~ 27007803 (+) False recql5
XM_043233411.1 mRNA downstream 97235 27281827 ~ 27282406 (+) True LOC122335546
XM_043232716.1 mRNA downstream 123048 27307640 ~ 27386062 (+) True LOC122334820
XM_043233156.1 mRNA downstream 251220 27435812 ~ 27438843 (+) True LOC122335316
XM_043233293.1 mRNA downstream 274199 27458791 ~ 27460139 (+) True rasd4
XM_043232694.1 mRNA downstream 290733 27475325 ~ 27488357 (+) True LOC122334777
TU35317 other upstream 331721 26846723 ~ 26847357 (+) True G23695
TU35298 other upstream 377683 26798811 ~ 26801395 (+) False srsf2b
TU35581 other downstream 97257 27281849 ~ 27282406 (+) False LOC122335546
TU35969 other downstream 1331051 28515643 ~ 28560324 (+) True G24115
XR_006248835.1 other downstream 1408223 28592815 ~ 28647092 (+) False LOC122334878
TU36019 other downstream 1522721 28707313 ~ 28708599 (+) False LOC122341395
TU36055 other downstream 1659249 28843841 ~ 28846292 (+) False LOC122335482

Expression Profile