RNA id: XM_043228679.1


Basic Information

Item Value
RNA id XM_043228679.1
length 2989
RNA type mRNA
GC content 0.44
exon number 11
gene id LOC122331163
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 5557008 ~ 5565974 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTGAAAACACCCGCGAAGTCAAAAACGCCCACTTTCTCTCCTCCTCGGTCGTGATTGGCTGCACGCTTTTCCTCTTCCGCACTCATCGCGTCAATCAGTGCGAAGTACGTTCCGACTTCTGCGCGAATACTTTTGATCAAACTACAGTTTCACAGGAGCTGTAGAAAACAATGGAACGCCGgcACGCTGAGTTCGTGGACGCGCACTATGAAGCTCTCCTTCAGAGAGTTACGTCCGTGATGCCCATCACCGATAAGCTATACGAAAGCGGTATTCTTACCTGGGAAGTGTATTCGAAGATCACAAAGGCAATTTCTAAAAAGTCCCAAATGAGAGAGCTCGTAATTGCTGTGAAATCCGGAGGACCTGCGCTGAAATCTGCGTTTTACGAAGTACTGAAGGACATCGTGCCTGATGTCGTTCGAGAACTGGAGGGATCGCCCTCGCAGACGGACGATAAAAAACAGCTAACCGGGTCTCGCCGTCAAAGAGCAGAAGATGAAGAGGAGCAGGCTGGGATCGATATCACCAGGTGGAACCCATCCTCCATAAAGTACAGAAGTAACATAGAGGAGCTCAAGAACGACTCCTGCAGGAAAAAAGTCGGGAACCTCTACTTttctaaaagtaataaatacaTCATTGGCTGTGGAGGAAGTGGCACGGTTTATCTTGGCCTGAAGGAAGACGGCACTGAGGTGGCCATCAAACGGATAACCAAGGACCAACGGAAAAGCAAAGAGTTCGAGAACGAACTAAAGCATCTGCGGGATTTAAATCTGGAGAGTAAGAATATCGTCAGGTATGTGGACTTAGCGGAGGATGAGGACTTTTATTATCTCGCGCTGCAGCTTTGCGAATACGATATGGAGGATTACATGAAAAATCTTCTTCAGGAAGAGCAAGAGGGCAAAGACGCGGCTTTGAGGAAAGTAGTGAAGGAGATTCTCCTTGGCCTTCAGGTCCTTCACCACGCCGGAGTGATACACCGCGATATAAAGCCTGGGAATGTTTTGATAGATTCAGGAAAAAATGCCAGGCTGGCCGACTTTGGCTTAAGTCGCAAACTGGAGGAGGGCAGAAGCACAGTGCATACTGCTAGAGCTGGCACGCAAGGATGGGAGGCCACGGAGATCCTGAATCAAGGAACGGGTTACAAGAAGACCTCAGACATCCAGGTTGCTGGGATGTTGGTGTACTACATCCTCTCTGGTGGGAAACATCCCTTTGACGCAAAGGACACAAAGGACGCAAAGGATCGCGAGGAGAACATCAAGAAAGGGCTGCACTCTCTTGAAGGTTTACAAGATATAGTAGCAAAGGATCTCATAGAATGGATGATCAACAAAGACCCATCAGAGAGACTGACCATTGACGAGGTCCTACGACATCCTTATTTCTGGGATGATGACAGCAAAGATGCTGTCCTTCGAAAGCTGGGTGACATGCCTGAAATCCAGAACTATGAGACTTTAGCAAAACTTCACAAACTCTACAAAGAAAAAGGGCACAGAGAGGGAACGGACCCAGCAGGAACACTGACCATTCATGAGGCCTTTGGTGAACTGAAAATAGAGAGTGAAAAGAAGAGAAACGACATCCTTAATATAGTTGGTGTGGATTTAAAGTATCTTTGGAAGCTCTTCAACACAGCAGACGAGGTCACGAGAGGAAAAAGCTTTTCTAATTGGAAATCACAGcTCACAGAAATATGGCCAGACATTAACAAAAAGCTCCCAGAAGACATTCTTGGCCTGCTGCGCGTTTTGCGCAACAAACTGGTGCATGCAAATGTCAGAAAGGAATTTGAGGAGAAGAAGATTTTTGACCAGTTCCCGGACTTTTTCATCAGTTTACACAGAGTGGCTAAAGACTTGAGCTGGAGGCATTGAAGATGCACCACAACACTGCGTGTGAAATTGACTGGCTTGTCAGTGAGCTACGGCTggacataacattttatttgatcattatttCAGATGGATCCATCATTCTTGTTGACAAATTCAATCGCTGTTCTCACTTACATCTAATAAACTTCAAGGGTATGAATAAAAGCCTCCTGTagcaaatgcatgcatttttgtgaaaaaaaaatatccgtatttcaaatgtaataaacatttttctctcaATTTATCTGACTGTAATACCCACGAAAAGACGTCAACGTTGGGTGATCGGTGACAAACatggagagaaaagaaaacagaatgaTGTTCGTGAATTAGAGCAGTCTTTCCCAATCCTAGGCACATCTGATTTAACTCGTGAGCTCGCTAGAAGAAACTCCAGGACCTGAATTGGGTTTTTCAGATGAGGGAGACGTACATAATGTGTCAGGACCAGGGTTGAGAAACACTGAAGCGCAAACcaaggatttgtaaagaaaactGTTCTAGGGTTTTGACGCTGGTTTGCTTCCTTTGCTCCTGTGAAGAGACTCGTGAGACTAACACATCTCCATCATATGACAGCCAGCAGAATTGAGAGAACGGTGTTTACAGTTAAAGTATGGTTATCTTACAAAAAACGCCTGATTCACTACAGTAGGCCTTCATTCACCTCCAGAGCTACGTGAGGCACGTTTTATTATAGATGCACtcgctttattttaatatgggTTGGACTGTTCGACTGATACACGCACCCGTAACACTTGGAGAAGCCAGgaccatttttaatgtaactcaGATTTTTCTGCTTTAATAAAACTGAAGCAGAAAGTCATGATTTATGATTTGATATTGGTATAAAATCAAGCTTAAATCAACTATTCAGATGTTTtcataaattagcattttattcaCATGTTTAGAGAGAGCGGTCAATGAGTGTGTCTTCTGGAAATCAAACAggtttcaaaataaatagagtattttttatacattttttatgctaGGGCATAATTCCACTGTCACCGTATTGTGGTGTATGTGTGCAGCCGTGtttttatactataaaataaaaatgatgatgcTCGTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25526 lncRNA upstream 39148 5450539 ~ 5517864 (+) True G17115
TU25524 lncRNA upstream 76405 5415794 ~ 5480607 (+) False nfil3-2
TU25519 lncRNA upstream 76405 5474542 ~ 5480607 (+) False nfil3-2
TU25502 lncRNA upstream 150849 5405770 ~ 5406163 (+) True G17112
TU25459 lncRNA upstream 244641 5310528 ~ 5312371 (+) True elof1
TU25831 lncRNA downstream 28012 5593986 ~ 5594547 (+) True G17300
TU25853 lncRNA downstream 81271 5647245 ~ 5648079 (+) True G17315
TU25863 lncRNA downstream 124561 5690535 ~ 5695636 (+) True G17322
TU25848 lncRNA downstream 169115 5735089 ~ 5737125 (+) True G17312
TU25885 lncRNA downstream 186007 5751981 ~ 5752280 (+) True G17337
XM_043228696.1 mRNA upstream 873 5551196 ~ 5556139 (+) True LOC122331179
XM_043233978.1 mRNA upstream 131744 5415758 ~ 5425268 (+) True nfil3-2
XM_043235013.1 mRNA upstream 143879 5409599 ~ 5413133 (+) True LOC122341561
XM_043235847.1 mRNA upstream 244704 5310493 ~ 5312308 (+) False elof1
XM_043235154.1 mRNA upstream 274691 5280179 ~ 5282321 (+) True swsap1
XM_043228624.1 mRNA downstream 591 5566565 ~ 5574214 (+) False LOC122331145
XM_043228662.1 mRNA downstream 591 5566565 ~ 5573687 (+) False LOC122331145
XM_043228643.1 mRNA downstream 898 5566872 ~ 5574214 (+) True LOC122331145
XM_043228634.1 mRNA downstream 898 5566872 ~ 5574214 (+) False LOC122331145
XM_043228651.1 mRNA downstream 1377 5567351 ~ 5574214 (+) False LOC122331145
TU25292 other upstream 650046 4905656 ~ 4906966 (+) True G16981
TU25278 other upstream 1010445 4510737 ~ 4546567 (+) False G16978
TU25277 other upstream 1023714 4470732 ~ 4533298 (+) True G16978
TU25283 other upstream 1070548 4470732 ~ 4486464 (+) False G16978
TU25288 other upstream 1097877 4458698 ~ 4459135 (+) False G16979
TU25833 other downstream 31125 5597099 ~ 5598232 (+) True G17302
TU25994 other downstream 532227 6098201 ~ 6099152 (+) False fbxw9
TU26034 other downstream 626766 6192740 ~ 6195022 (+) False LOC122341437
TU26037 other downstream 626766 6192740 ~ 6195022 (+) False LOC122341437
TU26040 other downstream 626766 6192740 ~ 6195022 (+) False LOC122341437

Expression Profile