RNA id: XM_043228740.1


Basic Information

Item Value
RNA id XM_043228740.1
length 5475
RNA type mRNA
GC content 0.48
exon number 21
gene id ap2a1
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11995095 ~ 12013540 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCGCCCGTTCTGTCACGAGCTCCGTCGGGGTACAGCGACTGAGCGAAAAGTCTCGCACGTTATTGACGACTAAATACAGCCCAGAGCTATCATTTCCTCCAAAAACAGGTCTGTCAGATCAGTTCGGCAGCAAGCAGGATTCCCCGTTGTCCTTTCGCGGTCATTTGGGTGATGTATTCTAACATTTGATAGAGCTAGCCAGCTCGCTAGCTGTTTGGCTAGCTTGCCGTGCGTGACTCAAAGTCAGAGAGGTATCAGTTGTTATTTAAACACCATCGATTGACATACAGGTGCgtaatcataaattaaaaacaacacgttggcttgttttttaattagtcGGTGCCGCGACGTAAGCGTACGCCTTGCATCGTTTTCCCATTGACGAGAGTTCACGGGATTGAATGAATTAGCCAACGGAAACAGCAGTCGCGCTGACTCCCCAGCTTCTCTCTCACCCGCTGCACTCACATATTTTCTTCACAAACACTCGCTGCTGCTTCACTTGTGTACTTTACGCGCGctttttttagtgaatttcaGGACTAAATTAGCGGCTCTAGTGTTAGTTAGTTCGCTAGCTCGGTGCATTTGAACCCAAACCGCCGCCAGTTAAACCTGAACATCTGAAAGACATTTTCGCGTTGAAGCCggcttgaagaaaaaaaaaaacgagcaaaCATGCCGGCTGTGTCGAAGGGAGACGGAATGCGAGGATTAGCGGTGTTCATCTCGGACATCAGAAACTGTAAGAGTAAGGAGGCAGAGATCAAGCGCATAAATAAAGAGTTGGCCAACATCCGCTCAAAATTTAAAGGGGACAAGGCTTTGGATGGATACAGCAAGAAGAAGTATGTGTGCAAGCTGCTCTTCATCTTCCTTTTGGGCCATGATATTGACTTCGGCCACATGGAGGCTGTCAACCTGCTCAGCTCCAACAAGTACACTGAGAAACAGATCGGATATCTGTTCATCTCTGTTCTGGTGAACAGTAACAGTGAACTCATCAGGCTCATTAACAATGCCATCAAGAACGACCTGTCCAGCCGAAACCCCACCTTTATGTGTCTGGCTCTGCACTGCATCGCCAACGTGGGCAGCAGAGAGATGGCCGAGGCCTTCGCAGGAGAGATTCCTCGCATCCTTGTGGCTGGGGATACGATGGACAGTGTAAAGCAGTCAGCAGCTCTCTGTCTGCTCCGTCTGTATAAGACCTCCCCAGACCTGGTGCTCATGGGAGAATGGACCTCTAGAGTGGTGCACCTGCTCAATGACCAGCACATGGGTGTCGTCACTGCCGCCATTTCCCTGATCACCTGTCTCAGCCAGAAGAACCCTGATGAGTTCAAGACCTGTGTGTCTCTTGCTGTGTCACGACTCAGCAGGATTGTGTCTTCAGCCTCCACTGATCTGCAGGACTACACCTACTACTTTGTTCCTGCTCCATGGTTGTCCTGCAAGCTGCTGCGACTTCTGCAGTGTTACCCACCACCTGAAGATGGTGCCGTGAAGGGACGGCTAGTGGAGTGTCTGGAAACTATCCTCAACAAAGCCCAAGAGCCACCCAAGTCCAAGAAAGTTCAGCACTCCAATGCCAAGAATGCCATTTTATTTGAAGCCATTTCTCTCATTATTCACTATGACAGCGAGCCGAATCTTCTCGTGCGGGCATGTAACCAGCTGGGGCAGTTCCTACAGCATAGAGAGACCAACCTGCGCTACCTGGCCCTGGAAAGTATGTGCACCCTTGCCAGCTCTGAGTTTTCCCATGAGGCAGTTAAAACGCACATAGAGACGGTCATCAATGCTCTGAAGACTGAGAGGGATGTAAGTGTGCGTCAGAGAGCTGCTGACCTCCTCTATGCCATGTGTGACCGTAGCAATGCCAAGCAGATTGTCGCCGAGATGCTGAGTTACCTGGAGACAGCCGACTACTCCATCAGAGAGGAAATGGTACTGAAGGTTGCCATCCTGGCAGAGAAGTATGCAGTAGACTACTCCTGGTATGTGGACACCATTCTGAACCTAATCCGCATAGCTGGGGATTATGTCAGTGAGGAAGTGTGGTACCGCGTCATCCAGATCGTCATCAACCGTGACGATGTGCAGGGATATGCCGCCAAGACAGTCTTTGAGGCTTTGCAGGCTCCAGCTTGTCATGAGAACATGGTAAAGGTTGGAGGCTACATCCTGGGAGAGTTTGGTAACCTTATTGCTGGTGATCCTCGTTCTAGTCCTTTGGTTCAGTTTAACCTGCTCCACTCTAAGTTTCACCTGTGTTCAGTCCCCACGCGTGCCCTGCTGCTTTCTGCCTATATTAAGTTCATTAATCTGTTCCCGGAGACAAAGAGCACAATTCAGGAAGTGCTGCGCTCTGACAGCCAGATCAGGAACAGTGATGTCGAGCTGCAGCAGAGGGCTGTGGAGTATCTCAAACTGTCCTCCATCGCCAGCACTGATGTCCTGGCCACAGTGCTTGAGGAGATGCCTCCATTCCCTGAGAGAGAGTCGTCCATCCTGGCCAAGCTGAAAAAGAAGAAGGGACCAGGAGCCGTCTCTGTGAACGAGCTGgaggagggaaagagagagggaggagaactcaatggagggggagagagaggaggggacAGCTCTGCCATTGCTGCCTCTAATGCTTCCACTCCGTCCCCATCTGCTGATCTGCTGGGGCTTCGCACGGGCCCCCCTGTTACCGCCGCCGCTCCCAGTGCAGGCAGCTTATTGGTTGATGTTTTCTCAGAGGCTGGAGTCAATGATGATGGCTTCCTGAGTTCTGCTCCCCCCTCTGTGGTCTCTGAAGATCCTGCTCCTCCTCTGCCTGAGTCAAACGAACTGCTCCACAAGTTTGTTTGCAAGAACAATGGAGTTCTGTTTGAGAATCAGCTGCTACAGATCGGCATAAAATCTGAATATCGCCAGAACCTGGGGCGGATGTATCTGTTCTATGGCAATAAGACGTCAGTGCAGTTTGTAACTTTCACGACCACGGTCACCTGCCCAGGAGAGCTACAATCTCAGCTCAATGTTCAGGCAAAACCAGTGGAGCCTCTCATAGAAGGAGGTGCTCAGGTGCAGCAGGTCATCAACATCGAGTGTCTGACTGACTTCACTGATGCACCACTGCTCAACATCAAGTTCAGGTATGGCGGGGCTCTGCAGAATCTCACTCTCAAGCTGCCTGTTACCATAAACAAGTTCTTCCAGCCCACAGAGATGGCATCACATGACTTCTTTCAGCGCTGGAAACAGCTCAGccaGCCTCAGCAAGAAGCACAGAAGATCTTCAAGGCCAACCATGCCATGGACACCGAAGTGCTTAAAGCAAAGTTACTGGGATTGGGCATGGCTCTCTTGGAGAACGTGGATCCGAACCCAGAGAACTTTGTGTGTGCCGGCGTGATCCAAACCAAGGCCCAGCAAGTGGGTTCTCTGCTAAGACTCGAGCCCAACGCACAAGCTCAGatGTACCGGTTAACCGTGCGCAGCAGTAAGGACACTGTCTCCAAGCGTCTTTGTGAGCTGCTGGCAGAACAGTTCTAGAACGTGAGCCGAGACTAGCACCATCTAGAACCGACACCCAGACCAGCGTTCCTGAGAGACCCCAGAATAAAGAATCTACAAAACGCATTCATGCATAAGGGAAAAAGTAGCTGTCAGCCTCTGGCAGCCATATTACTGTCCTTCtgataatgattattattactgttgttatCATCAGCGCTgccctttcttgtttttatcGGTGTTTACCTGTGTGTGAGCAGTGGAGCGAAAGGAAGCGTGcatgttggggtttttttttttttttggctgttttttttttcgtacatGTGTGAAAGAGTCATGGTGATAGTTCCGTTCTCCGTCCTGCCTGTTCAATGATCAACTCCTGTGCTTTTGTTGACagcttgtttgtgtgtatgtgtgtggtgtgtgtgtatgtggataGAGGGGGAGGGAGAAAAGTAAAGCAGAAAGATGGAAATGGAGCAAACCTTCCCTCTCTCGCATATTATGCGCAAAAGTTTCAACCGCAAAAACTGCACATTAGCTGTCTCTTTGGAACATTCCCTATAAGACTATTAGCAGGGCAAGAAAACACAATCTCAATACACTAACGCAATGGCACTTCCTTAAAAAAGGCCAGAATCACTAACCCCACCCCCCTCTCTcccattgctttttttttttttttttttcctcttcaacTGAAATTGGTCACATCCAGCGCCATTGGTgtacataagaaaaaaaaaatagagagattCCACATGCATTTCCAGTTTATCGCACCGAACGTACGTTCCTTCTGACGTAGAAATGGCCAGTGCACTTTAAGAGGCTTTGAGAGGAAAGGCTTTTATAGTCCCACCCCCTTTTCCTGTTCTTGTCCTATGTATTCAGTACTCGTCCTGACCCCCATATCTGACaatgtttattgaaaaaaaaaaaatctctatatataaatatatataaaccatgTAAATGATTACCCTTCATGGATGCATTTGTATGtctctttcttgtttttgatAGTGGTATATTGTCAGCGTGTTTGTATGCTTTCTTAAATGGTCTAATGTTTTTGCTCTTGTTTTGGACATTCCATTCTGTACTACGAGTGAATGGGCATAACGTTTCAGGTTAGTCGTACAGTGTTAAACTGGGGAAAAACTAGAATCAGAAAGAGTGCAAATGAAGCAGAGGGAGGGTCAGGTCCACCAGTGTGTGAGTTTCTGCACATGAAGAGTGCAACTGCTGTGGACCTTCatgtaaatgtctttgttttggggtttttttgtaatatcgtttaaaacaaaaacaaaaaaattctggAGGACAACATCTTCCAGCAGTTATTGACTGAAATGAATAGTAGATAGTGGTTACCTCATTACTAAATCCTTACACGACACACACTATTAACTTTGAGTGGTGAGTGGCCACAGCTGGAGACCCATATTTTCTTTTGCAGCGATAAAACCTGGGAAAGCACTTAGTTTGTGAAAAGTCATCACAGGCACGCAGTTGTACACACATTCTTAGGCTTAGAGGGAGGGGGCTTAAGGGGAGCACTGGACCAAAGCAGCTGCCAACTGTCAATCACGTGCAGGGATCATAACGATTTTGGTCAGCATTGTTTGGTGAGCGAGTGTGTGGTGGTGTTCTGTGTGATCCATGTGAAAAATATAATGGAATTTATGCGACATTTGTCATATTAGCTGGGGGTCACGCTTCCCGTGATGCAGTGATGCAGTACTGGGGACATCGTCATTGTAGTTGATTAGAGTCACAGTCatggcgtgtgtgtgtttctgtgtgtgcgtgtgtctatGCAGTATCCGCTAGCTAATGCAGCCCCGGTGTATCGCTGTTCAACCTGTCAGATACCTGTGTTAGATTAAATTTACTCTGTACTGAATAATGTGAAAGTAAAATTATGCCATATACTCGAA

Function

GO:

id name namespace
GO:0009950 dorsal/ventral axis specification biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28622 lncRNA upstream 21089 11967648 ~ 11974006 (+) True G19208
TU28625 lncRNA upstream 101439 11891903 ~ 11893656 (+) False syt5a
XR_006249757.1 lncRNA upstream 159842 11834772 ~ 11835253 (+) True LOC122338225
TU28582 lncRNA upstream 275516 11712609 ~ 11719579 (+) False G19184
TU28679 lncRNA downstream 29344 12042884 ~ 12049422 (+) False prr12b
TU28685 lncRNA downstream 59179 12072719 ~ 12073073 (+) True G19255
TU28687 lncRNA downstream 60691 12074231 ~ 12074503 (+) True G19257
TU28697 lncRNA downstream 103803 12117343 ~ 12117909 (+) False pax10
TU28698 lncRNA downstream 104998 12118538 ~ 12118775 (+) True G19263
XM_043230846.1 mRNA upstream 8990 11984546 ~ 11986105 (+) True LOC122333296
XM_043225818.1 mRNA upstream 13095 11979763 ~ 11982000 (+) True LOC122329533
XM_043225827.1 mRNA upstream 13095 11979803 ~ 11982000 (+) False LOC122329533
XM_043228260.1 mRNA upstream 16037 11976888 ~ 11979058 (+) True prl
XM_043235436.1 mRNA upstream 101853 11885655 ~ 11893242 (+) False syt5a
XM_043228760.1 mRNA downstream 1465 12015005 ~ 12018012 (+) True si:ch211-195b15.8
XM_043235433.1 mRNA downstream 5634 12019174 ~ 12023434 (+) True rras
XM_043234990.1 mRNA downstream 10647 12024187 ~ 12026934 (+) True prrg2
XM_043234989.1 mRNA downstream 10648 12024188 ~ 12026934 (+) False prrg2
XM_043234988.1 mRNA downstream 10672 12024212 ~ 12026934 (+) False prrg2
XR_006249731.1 other upstream 161171 11773201 ~ 11833924 (+) True kcnc3a
XR_006249728.1 other upstream 161171 11773201 ~ 11833924 (+) False kcnc3a
XR_006249729.1 other upstream 161171 11773201 ~ 11833924 (+) False kcnc3a
TU28236 other upstream 625343 11368893 ~ 11369752 (+) True G18949
TU28257 other upstream 659270 11333759 ~ 11335825 (+) True LOC122331261
TU28690 other downstream 79063 12092603 ~ 12100852 (+) True LOC122342134
XR_006249244.1 other downstream 289824 12303364 ~ 12312990 (+) False nbr1b
TU28786 other downstream 498386 12511926 ~ 12513721 (+) False G19326
TU28787 other downstream 498386 12511926 ~ 12513721 (+) False G19326
XR_006250478.1 other downstream 506297 12519837 ~ 12528803 (+) False gtpbp1

Expression Profile