RNA id: XM_043228760.1


Basic Information

Item Value
RNA id XM_043228760.1
length 2192
RNA type mRNA
GC content 0.47
exon number 6
gene id si:ch211-195b15.8
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12015005 ~ 12018012 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTCATCTTTTTCCTCCCTCGCGCAGGTATAGACATACAACAACAAATAATGTTAGAGGCGCAGTCAGAAGAGAGAGGAGCACGGGAGCACAGCTaacaagaagagagagagagagatcaaggGACTGTTTATATTCGAACAGATACTGCACGCGATACTTGCTTGCTCTTGTTTTGTGCTGTTTACAGCGTTCCTTCAGCAGCTTCGCAGCactttttcagcctttttttgATTTCCTGCACACTCTGCTGATCTATAACCGCCTGGACTGGTTTTCGGATTACGTCAAAATTCAGAgcaacttgtttaaaaaaacaacaagagatGGTCTACTACAGGGACGGTCAGTCGGAGAGGCCACCGTTGTCTCGTATTCTGCCGCATCTCTACCTTGGTGCAGAGACTGACGTAACTCAGGATGGTTTGTCCGACCGAGACATCTCATACGTATTAAGTGTGAGCCGATGCTGCCCACAGCCGTCATTTCTGCCCCAGTCCCAGTACCTCCGGATCCCAATAGACGACTCCCTGCGGGATGACCTGCTTCCTTGGATCCCTCAGGCGTTGCACTTCATTGATGGGGCCATGTCACGTGGCTGCTCAGTCCTGGTCCACTGTGCTGCAGGAATCTCTCGATCTCCAGCACTTGCTGTGGCCTACGTCATGTACAGCCTAAAAATGGATCTGGATCATGCATACAGgTTCGTGAAAGAACGCAGGCCGACGATTTCACCAAACTTTAACTTCTTGGGACAGCTGCAGCTCTTCCAGGGAACACTTTCTTTGAAGAATAATAACACAAACCTTAACGCTCAGCAGTCGGTCAAACCTTTAGATAACTGCCTAAAGCCCGccagtgaaaaaaacaacagcagttcCACAGTGGCGCTCTTAACTAATCTGAACCTTCAGAACAACATGGACAACAACTGTATTAATAATGGATGTACTGAGGATTCCAAAGCAAACGTGCACTGTGAGAACAAGAACAACCAAATGGAAAATATTCAGAGCCGAGGCCAACGCTGTGAGCTGATGAAGCCAGAGTTTACCTTATCTCTTTCAGACAAGCTCGGAGCGCTCACTCTCTGCACCAGTCCCATAGAGGTACAAAGACCAATCGGCGTCGCATCTCAGTCACAGCAGGATGCACCAAAGTCCAACCTACCTAAGCCTACTTACCTTCAGATTCCGTCTCTGGCAGAGAAACGCAAAAGCCTTACTCTTTCCCTAACCCCAGTGAGCGCAGTTCCTCAGACTCACCAGAAGGGGTCATCAGTGAACAGCTGTGATCTGGAGCAGAGCACTTCCGCCGTTGACCAGACGGGGGCATCAGATGACTCGGCCAGAATCGATGTGGAGCCATCGGCATCAGAAACCAAGACAGAACCAAAAGAGGCGAACGGGTTTGTCAGCCGGGAGGCTTCAGCTAAACTCACCTGCTCGAAATCGCGACGAAGAAAGAGTAAACTAAACCGACGGTACCCCAGAGCAAATATGgagcaacaaaaaacaaaccaagtGAGCCATTTAAGCACAAGATCACAGAGGCAGGCCCAGGGACCGCATGCTATTGCAACCTCTCCGCAAGAGCTTTTTGTGAAGGAGGTTACTGGCGGTGTAGAAGCAGTGGAGGGTATGGTCGGAGACCAGAGCCCCTTGTCTCCAGTCAGTCTTACAGTCAACAAAATACTGGACTGGGGTGAACGCATGCTGCTTGGGGTCCTACTTGGGCCACGTATTAAAGTGGGACAGGCTGCTTTGCCGTACAGATGTTGAAGAGAGGTTGGTTGTATGGACTATGTTATTTATGGATACGGGTGTAAACAAGGACTGTGCACTGTATCTTCCTAATGATCCGAACAAACTTAAATGAAGACACCGATACCATAGTCAAAAAAAGCatatgtatgagtgtgtgaattcacttatttatttaatgaacttGCATGTTCCTCCAAGATTATTTGACAGGCCCGCGTCATCTGATGGACCGGTGGTGATATGTGAATAAACGACTGAACGTCTGCAAGAACATGTGCGATTTGTTCTATTATAATGCACAGCCTGCCTGtgactttatttattgaattacactgataattgttatttataaagGGGTATTTTGCAGGTGGAATTTTAACACTATCGCTTGTATTGAAAACAGTGTTCATTaaagacaattatttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28622 lncRNA upstream 40999 11967648 ~ 11974006 (+) True G19208
TU28625 lncRNA upstream 121349 11891903 ~ 11893656 (+) False syt5a
XR_006249757.1 lncRNA upstream 179752 11834772 ~ 11835253 (+) True LOC122338225
TU28582 lncRNA upstream 295426 11712609 ~ 11719579 (+) False G19184
TU28679 lncRNA downstream 24872 12042884 ~ 12049422 (+) False prr12b
TU28685 lncRNA downstream 54707 12072719 ~ 12073073 (+) True G19255
TU28687 lncRNA downstream 56219 12074231 ~ 12074503 (+) True G19257
TU28697 lncRNA downstream 99331 12117343 ~ 12117909 (+) False pax10
TU28698 lncRNA downstream 100526 12118538 ~ 12118775 (+) True G19263
XM_043228732.1 mRNA upstream 1465 11995095 ~ 12013540 (+) True ap2a1
XM_043228740.1 mRNA upstream 1465 11995095 ~ 12013540 (+) False ap2a1
XM_043228750.1 mRNA upstream 1465 11995095 ~ 12013540 (+) False ap2a1
XM_043230846.1 mRNA upstream 28900 11984546 ~ 11986105 (+) True LOC122333296
XM_043225818.1 mRNA upstream 33005 11979763 ~ 11982000 (+) True LOC122329533
XM_043235433.1 mRNA downstream 1162 12019174 ~ 12023434 (+) True rras
XM_043234990.1 mRNA downstream 6175 12024187 ~ 12026934 (+) True prrg2
XM_043234989.1 mRNA downstream 6176 12024188 ~ 12026934 (+) False prrg2
XM_043234988.1 mRNA downstream 6200 12024212 ~ 12026934 (+) False prrg2
XM_043234987.1 mRNA downstream 9137 12027149 ~ 12049417 (+) True prr12b
XR_006249731.1 other upstream 181081 11773201 ~ 11833924 (+) True kcnc3a
XR_006249728.1 other upstream 181081 11773201 ~ 11833924 (+) False kcnc3a
XR_006249729.1 other upstream 181081 11773201 ~ 11833924 (+) False kcnc3a
TU28236 other upstream 645253 11368893 ~ 11369752 (+) True G18949
TU28257 other upstream 679180 11333759 ~ 11335825 (+) True LOC122331261
TU28690 other downstream 74591 12092603 ~ 12100852 (+) True LOC122342134
XR_006249244.1 other downstream 285352 12303364 ~ 12312990 (+) False nbr1b
TU28786 other downstream 493914 12511926 ~ 12513721 (+) False G19326
TU28787 other downstream 493914 12511926 ~ 12513721 (+) False G19326
XR_006250478.1 other downstream 501825 12519837 ~ 12528803 (+) False gtpbp1

Expression Profile