RNA id: XM_043228819.1


Basic Information

Item Value
RNA id XM_043228819.1
length 1140
RNA type mRNA
GC content 0.47
exon number 2
gene id si:dkey-66i24.7
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11344269 ~ 11345934 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCATGTCCATTTCCGGGAAAAAGCACAACAACACCCTGCTCAACGCTGTCTGGTGCGAACGAGGTCGTTGTTATTATCATCGCTGTTGTCGACGCTCGGAAGGAAGTCATCGCTGGGGTTGTTAAAATCCACGATTAGTCACAATAACGCTTGACgagattaataaaaattaaatgcaacatGGAGGTCATCGAGTCAATTGTCACAGACGCCATTGAGGTGGAGGAATCCACAACTACGGTTACGACTTTGGAGacagaaaagtcaaaaacagAGTTTGTGTGGACTCTGCAAGCTACGTGGCATCTCGTCCACGTTCGTTTGGACATGGACCCAGAGTTTGACCAGCCCGTGTGCAAGAAGAAGAAGCTGTGGGAGACCGTAGCCGAGAGAGTGACTGCAAAGCTAAGGGCCGAGGAAGGCACAGACATTTCGGTCAAGGCCTTCGAGTGCGACCTGAAGTGGAGAAACATGTTAGCGACGTATCGCAAAAATGCAGAGCGAGCCAAAAGACTGGGAACCAACAGCGTTCACTGGGAGTTCTTCAAGGAGATGCATGAAGTGCTGGGGAGAAGCTATGAGGAGGTGGATGCTCAGCGCAAGGCCAAACTCAACGGCACCAAGCTGGGAAAGGCCATAGCCAGCAAACGATTCACCCCGATACTGCCCACACCCACAGCGACAGCGCCACAGTTACCCAACGCCAGGCCTCCTCAGGATTTGCTGCAGCTGTACCTGGAGCTGCAGGAGAGGAAGCTGAACATGTGGGCTCAGCAGAAAGCGCTGGAAGAAAGGAAGATCGAGGCCATTAACAACTTGGCACGTGCCATAACTTGCCTCTCCCAGAACAATAGCATGCAAACGGTCAAAGATTGTCTGTCAGACAGCCCTGTTACACAGCAGTAGTCTTTTCAGATaagaaatgcaattttatttttagagaacCGACTGATATGTTGAACCCTTTTCAGAGGATTTAAAAGACTTGAACAGCagtttgttgaaaaaaaaaagctctgttttttttccttcagtgtgtattgcaaaaatataacggagaagttaaaaatgtaaaatgagcaCAGGACAAGGTGTACatagtatttttgtgttttaataaaaatcatacaaaatgtTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28247 lncRNA upstream 49664 11289747 ~ 11294605 (+) True G18960
TU28248 lncRNA upstream 49664 11289747 ~ 11294605 (+) False G18960
TU28212 lncRNA upstream 73163 11270202 ~ 11271106 (+) True G18932
XR_006249214.1 lncRNA upstream 151274 11189556 ~ 11192995 (+) True LOC122336311
TU28206 lncRNA upstream 151877 11189939 ~ 11192392 (+) False LOC122336311
TU28274 lncRNA downstream 25568 11371502 ~ 11375401 (+) True G18982
TU28233 lncRNA downstream 34339 11380273 ~ 11380790 (+) True G18946
TU28487 lncRNA downstream 91010 11436944 ~ 11437197 (+) True G19123
TU28491 lncRNA downstream 94572 11440506 ~ 11441338 (+) True G19126
TU28582 lncRNA downstream 366675 11712609 ~ 11719579 (+) False G19184
XM_043228831.1 mRNA upstream 8489 11333741 ~ 11335780 (+) False LOC122331261
XM_043228836.1 mRNA upstream 8489 11333742 ~ 11335780 (+) False LOC122331261
XM_043235879.1 mRNA upstream 30900 11308682 ~ 11313369 (+) True prf1.1
XM_043235878.1 mRNA upstream 35712 11305325 ~ 11308557 (+) True prf1.9
XM_043235291.1 mRNA upstream 62528 11278737 ~ 11281741 (+) True cldni
XM_043228438.1 mRNA downstream 17049 11362983 ~ 11367115 (+) True si:dkey-66i24.8
XM_043235874.1 mRNA downstream 62103 11408037 ~ 11413269 (+) True clec19a
XM_043235460.1 mRNA downstream 151719 11497653 ~ 11515159 (+) True LOC122341817
XM_043235659.1 mRNA downstream 245666 11591600 ~ 11594168 (+) True ccdc43
XM_043235982.1 mRNA downstream 257740 11603674 ~ 11606177 (+) True fzd2
TU28257 other upstream 8444 11333759 ~ 11335825 (+) True LOC122331261
XR_006250543.1 other upstream 181826 11162354 ~ 11162443 (+) True LOC122342197
TU28036 other upstream 562416 10752759 ~ 10781853 (+) False kcna7
TU28033 other upstream 562416 10778806 ~ 10781853 (+) False kcna7
TU27725 other upstream 1309802 10025818 ~ 10034467 (+) True G18574
TU28236 other downstream 22959 11368893 ~ 11369752 (+) True G18949
XR_006249731.1 other downstream 427267 11773201 ~ 11833924 (+) True kcnc3a
XR_006249728.1 other downstream 427267 11773201 ~ 11833924 (+) False kcnc3a
XR_006249729.1 other downstream 427267 11773201 ~ 11833924 (+) False kcnc3a
TU28690 other downstream 746669 12092603 ~ 12100852 (+) True LOC122342134

Expression Profile