RNA id: XM_043228844.1


Basic Information

Item Value
RNA id XM_043228844.1
length 4037
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC122331276
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11346726 ~ 11352796 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAAAGAGTGTCCAAAAGAGCGGACAAGCAAAACATGTGCGTTTTAAGATGGTGGTGCATATTGAGTTACAAAAAGAGGGGGGGGGGAAGCATGAGTGAGAGTGATCTTGTGTGATATTGTAACTTTGCTGAGAATTTGAATCGCTCTCCCTGTTCCTCCTCACGTCCCGTCGAGCACTAGCAGCTTACTCTCACTGTATTGTCGCAAACCCTTCCAATGTCCAGTGTCTGCTCATCTACAGGTTAATCCACCAATCACAGCGTCCCATTTTGATTTGGTAATGTTTCCCTTTGATTTCTGGACGAATTGCTCATTTGTCAGACAGCTGTTAGTCACCTGTCGGAGGTGGTTAGATATCTGAGTATTTAAACCCGTGCTTCTTATTTAATTCACGCAGATGTTATGTTTGGAGAGTTAAacgttttgtgcttttttttttcttttttttttggtgtgtgtgtgtgtgtgtgtgtttcaatctGATAGGGGTGGGGTGGGTTTGTGTTTGTGGCTGTGAGGTTTTACAAATGCCCACTTTACTGATCGCATTTACAGTACGCTATTGTGTGTTAATGAGTAttgatattataattattcttatttagATCCTGTATAATTTTATTGGGGTGCAGAAGGCCATAGGCTGAAGCGTTTTATGTTACCAACTTAATATAGTGTAAATGCACATGGAACTTACTGAACATCAGAGTGGGCATGGATGCCTGCGAATGAATACACAGCACATGGTTAAGGTGAATTCTGACATACAGTGGTTtcattgtaaatacatttttccacTCGCATTGTTGATTCCTGAAGTGTGTGTTGCTTTTCTTTACCCTTCTTTTTGTTGGAGGAGTGTAGTGGCGTCCGCTTgtttctttttgaacatttgtttGAAAGCTTAAGTATTGACATTTAATTCcctgatttttgtatttaaatcaaAGGGGAGTGTAAATGCtagtctgtttttgtttcttttttgtgtgtgtgtgtgtgtgagagtgcgcgtgtgtggcattttaaaatagtggAAAGAatcaagtaaaaatgtaaagatcaATAAGAATGAAGCCTTTGGGCGCAGTTGCTTGAACAAGTGAATGTTTAACTTTAACACAGATTCTGACATTGTGTTCATCCCAAAAACAGATCCTAATGTTTTTGCGAACTCACCCCTATTCTTCTCAGTGATGGCAGTGTTTCTTCACAGTGCtcttgcaaaaacaaacaaacaaaaaaaaaagttaaaaacagaaaagaaaatcatgcTGCAGTATCTGTAACTgcgtttaaattaattaaaatcagcCCTTTTCCACTCCTTGTCTAATGTTCAACGTCTGTTTATTAATGCTGCCGCTTTTGGGGTTCTAGTTTTCTtattgtttaatacatttggGGGTATAATTGCTATGTTACACAATATCAACAATGAATCAAACTACAAAAAAGACGGATGTAAATGAACAAGACAAgataagaaaaaggaaaaacggTGCTTTCCGCAATTCAGTGTTTTCAGATGTAAAGTGACTTAAGAAACGAAAATAGGCCTAGAAATGTGATTTGCATTTATGCTGTTGAAAGGTAAAAGTGAAAGATTTCTAAGATTAAGGTCTGTTTCAGTTTCTGTATTAGTAAAATTTAACACAGCTTTTCAAAATTAGGAATTACTTGCAATCGCACGCATGTAAAACCCTTCTCTAAATACTTCTGTAATATGTGAGGGTTTAGGGGACctagtttttgaatgaatcagttgaacCGGTTCACAGTTAAaccttaaaatgtgtttacgACATGATCAATTATAAGACACaatactattatataaataGAATTGTATTAAAACGCCCTTGAATTATTATTGTAGAAGCAATGACTTTtagaagtgtgtgtatgtgtgtgtgtttcacatgaATGTGCTTAAAGTATTTACAACATATAACTcgaataaattaatatataaaaaaatagtccCAATTATATTGAGATGTGAGGTCGGCTCTCCAGTCACTCACGACTAGCATTAATCAAATGTagaattttcttttataaacatGAACAAGTAACTTACAAGTAAACGGCGATAAACGGGTTTGTCGGCAGTTAACAGATACATGTTGTGTTGAAATCGCACAGGACCAATCATAGTTGTTAAAAATATGCGCATGCGCGGTGGATCAATTTATCTAGCAACAGAGGCTAATGGATAGAGAGGATCGAGGTCTGTCAAATCAAATATCTTCTCGGTGTTTTGGTTTCTGGGTATAATTAATACTGGCGCGCCACTGtgtattttaggttttatgactttcaaataatttcaaactCGCGTCTCTGTGTTAACTCAATCACTTGCGCCGTTTGTTTTCGGAGAGACAAACGTACTTAGCTAGCTTCGTCATCCGTCTGTTCCCGCGTTAATGCGTCCAGATGGACGCTCGCAAGCGGAGCGTGGCGGCCGCGGGACGCGTGATCATGGACGCGGTGCAGGCGGAGTGGGAGCCGCTGTCCCACTGGGAACTGGACCAGCGGCTGGACCGAGCGGTGGAGGAGATGATAGAGGCTGACCTGGTGGCGCAGGTCCAGGAGCAGAGCGCCTCTCAACAGGAGGATTCGTCCCCAGCGGATGCGGCTCCCCAGGCGCCCGAGTCCAGGAGCGCTCAGGAGTCTGCTCTGCAGCGCGCGCATGCTACTGAAGCCATGGAGGCTAACCCTACAGTGCAGTATGTGACAAATTTTTTGCAAGGCTCCAACACGGGCTACAGCAAGAACCGATTGTCCGGCAGAGCTCGACTGTCCTTGTCTCACACTGTCCTCCTGTCCCTCACCCTCCTGTCCAAACGCATCAGCTACCGCAGTGTGTCCTCTAGTTTCCATCTGGAGAAGGGGAATATTCACAGgatcttcttctctttctgcgAACAAGTGATCACACAAAAGGATCGTCTCATTCAGTGGCCTACAGGACAGGAGGCCCTACAACATCTGCTTCCTTTCTCTAGCTGGCTGAGTCGCAACGAGGGTCTGGAAGAGAGAGGTCTTCCTCGAGTGCTCGGCGTGCTAGGTCACACACGCATCCCCATCCGCCTGCCCGCTGGCAAACCAGACGGTGAGAGCGACCCCCCGGAAGACAAGAGACCCAAGATCGAGCCGCATCCAGATTCGTGGCTGAACCTGGAACTGGTCTGCAACGACAAAGGCCGCTTCATTTACTGCCACATCAGCAAAGGATCGGAAAAAGACAGAGGAAGCGCGTTAGCCGAAAGGATTCGGCAAAACCCTGAGATGGTGCCCCCAGGGACCTGCCTGATAGCCGGAGTGGGATACCCGCTCACGGAACAAATACTTACTCCGTTCTCAGCAGGTCGAAACCCACAGGAAAACCTCTACAACCGGTCGGTGATTAGCCATTTAGGCCGATTAAACCAGGCTGTGGCAGACTTAAAAGAGCGATTCCAGAAATTGAGGTACTTGGATATGGGAAACTATGAGAGGGCGAACGCAGTAGTTCGGACGGCTTGTATATTACACAATGTTTTTCTGGACATGGGGGATGTGACAAAGGGACTGGTGGAAAGGAGCACGCCGGGAGACGTGGACGAGGTAAACGAAGACGCAGCTGGAGTGAAAATGAGAGAGACCGTGGTGAATCTGCTTTACAGCACTCTGGAAGCAGCGCCTCGATAAAAGTGTgcatctcatttgcatatttaaagggatagttcacccgaaaaaaGAAACTGTCGTCATTATAAAGCCATGtgactttcattcatttttggaactcataataagacatttttatctttttaaatcatttttgtccagCCATTTCAAGTTCACTAAGCCAAAACTTGCACTtatcaaaaagtacaaaattacATAAGCCGTATCACGTGGATTAATTCTTCTGAAGTAAAACAATTGCTTGATgtaataaacagatttaatttatgtgaatgaataaaaacatcagtttttCATATAGAgtgtgagtaaataaaaaagttaatctTTTCCATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28458 lncRNA downstream 10926 11333756 ~ 11335800 (-) False G19108
TU28460 lncRNA downstream 10926 11334983 ~ 11335800 (-) True G19108
TU28461 lncRNA downstream 10926 11334983 ~ 11335800 (-) False G19108
TU28324 lncRNA downstream 577328 10767300 ~ 10769398 (-) True G19019
XR_006248708.1 lncRNA downstream 651222 10689419 ~ 10695504 (-) True LOC122334019
TU28475 lncRNA upstream 57539 11410335 ~ 11410716 (-) True G19117
TU28478 lncRNA upstream 59189 11411985 ~ 11414305 (-) False syt17
TU28479 lncRNA upstream 60611 11413407 ~ 11414305 (-) False syt17
TU28853 lncRNA upstream 416926 11769722 ~ 11771648 (-) True G19375
TU28859 lncRNA upstream 491218 11844014 ~ 11844199 (-) True G19381
XM_043228803.1 mRNA downstream 2709 11336383 ~ 11344017 (-) False armc5
XM_043228797.1 mRNA downstream 2711 11336383 ~ 11344015 (-) True armc5
XM_043234665.1 mRNA downstream 20365 11313508 ~ 11326361 (-) True LOC122341295
XM_043235984.1 mRNA downstream 44036 11289917 ~ 11302690 (-) True paqr4a
XM_043235290.1 mRNA downstream 57694 11281806 ~ 11289032 (-) True coro1a
XM_043228865.1 mRNA upstream 12 11352808 ~ 11355312 (-) True elob
XM_043225572.1 mRNA upstream 3078 11355874 ~ 11361915 (-) False zgc:153292
XM_043225577.1 mRNA upstream 3078 11355874 ~ 11361629 (-) True zgc:153292
XM_043225584.1 mRNA upstream 3078 11355874 ~ 11361162 (-) False zgc:153292
XM_043225596.1 mRNA upstream 3078 11355874 ~ 11360453 (-) False zgc:153292
XR_006248663.1 other downstream 282143 11011936 ~ 11064583 (-) False lrrc4ba
XR_006250542.1 other downstream 566530 10780102 ~ 10780196 (-) True LOC122342196
XR_006250541.1 other downstream 567491 10779101 ~ 10779235 (-) True LOC122342195
XR_006250486.1 other downstream 950385 10394314 ~ 10396341 (-) True eef2kmt
TU27537 other downstream 1883821 9426572 ~ 9462905 (-) True G18433
XR_006250462.1 other upstream 341476 11694272 ~ 11714719 (-) False map3k3
TU28831 other upstream 360024 11712820 ~ 11727975 (-) False limd2
TU28829 other upstream 362926 11715722 ~ 11727975 (-) False limd2
TU28830 other upstream 362926 11715722 ~ 11727975 (-) False limd2
TU28832 other upstream 362926 11715722 ~ 11727975 (-) False limd2

Expression Profile