RNA id: XM_043229085.1


Basic Information

Item Value
RNA id XM_043229085.1
length 1217
RNA type mRNA
GC content 0.46
exon number 8
gene id chmp6a
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 7649629 ~ 7655190 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGCGCAGCTGCGTCCAGAGACGCTAAACCGCGGCTGAATAAAAACGCGCTCGGCACGTCGGAGCGCGTCTTTTCTGCGTGTTAGGACGTAAACGGCAGCTGGCGTTTCGCGTGAGATGCGATATTAGCAGCGAGGCGGGAATGTGGTTCATTCGCAATGGGAAATGTTTTCGGCAGGCAGGGACGAGTCACCAGTCGAGTGACAGATCAGGACAGGGCGATATTGCAACTCAAACAGCAGCGAGATAAACTGAAACAATATCAGAAGAAGATCACATTAcagctggagaaagagagacgTCTGGCCAAACAGCTCCTGAAGGATGGCAAGAAGGAACGAGCTCTTCTGCTGCTCAAGAAGAAACGCTACCAAGATCAGCTGCTGGACAAGACCGACATCCAGATAGCCAACCTGGAGCGCATGGTTCAGGATATAGAATTTGCTCAGATTGAAATAAAGGTCGTTGAGGGTTTAAAAGCTGGGAATGAGTGCCTGAAGCAAATGCACGAGGTCATGTCTGTTGAGGAGGTGGAGAGAATACTGGAGGAGACGCAGGAGGCCATTGAGTATCAGAAGCAAATTGATGAGCTCCTGGCAGGTTCTCTGACAGCGGAGGATGAGGACGCTGTGTTAGCAGAGCTGGAGGCCATCGCTCAGGAAGAAGACGTAGCCCTTCCAGAATTGCCCACGGATCCATTGCCGGCGGTGCCTTCGGGAGACAGAAAGAAGAGAGGCACAAATCAAGCCGGAGCGAGAGATGCTGGCAGCGTAGCGTTTGATCCCGCAACCTGGCTCGTCactttgttttgaatgaaagGAAGCGCTAGGGGAATGTAATTGGCAGAAAAGAAGGCTTTCGTGGCATATTTAATAGGCAAGCCATCAGAATCGGCGTTCCCGTGGTCATGGAAAACTTGGAGATATCAgggatttttacatttttgatttttagaCTTCGTGGAAATAAATTAAACGTCAACAAAAAGTAATGGAAATGTCTCACacttatttattgtaattcgctataatgtaattatatatttttaaatatttaaagttgttGTATGACCCAACGATGTAGATAGAAATGTTACAcagttacagtattttttttttttttttttgaatggcaAGTTTGCTTGAAGCATATAGCAGTTCATGTTTGAACCGATTCATGTTTggttttgttcaaataaatgaacaggCTGTGAACCTC

Function

GO: NA

KEGG:

id description
K12195 CHMP6, VPS20; charged multivesicular body protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26695 lncRNA upstream 58103 7585473 ~ 7591526 (+) False LOC122331592
TU26696 lncRNA upstream 58103 7585473 ~ 7591526 (+) True LOC122331592
TU26666 lncRNA upstream 240089 7409238 ~ 7409540 (+) True G17867
TU26661 lncRNA upstream 251164 7398239 ~ 7398465 (+) True G17862
TU26660 lncRNA upstream 256757 7392591 ~ 7392872 (+) True G17861
TU26730 lncRNA downstream 16513 7671703 ~ 7728184 (+) True G17912
TU26754 lncRNA downstream 165120 7820310 ~ 7820640 (+) False slc27a1a
TU26758 lncRNA downstream 169996 7825186 ~ 7825842 (+) True G17928
TU26760 lncRNA downstream 174294 7829484 ~ 7829860 (+) True G17930
TU26763 lncRNA downstream 185853 7841043 ~ 7841669 (+) False LOC122341274
XM_043228545.1 mRNA upstream 683 7619650 ~ 7648946 (+) True ttyh2l
XM_043229148.1 mRNA upstream 64031 7583354 ~ 7585598 (+) False LOC122331592
XM_043225518.1 mRNA upstream 275165 7362916 ~ 7374464 (+) True hs3st3b1a
XM_043234879.1 mRNA upstream 348896 7294957 ~ 7300733 (+) True LOC122341489
XM_043228332.1 mRNA upstream 368593 7270990 ~ 7281036 (+) False slc16a5b
XM_043235702.1 mRNA downstream 841 7656031 ~ 7719941 (+) False baiap2a
XM_043235706.1 mRNA downstream 842 7656032 ~ 7725519 (+) True baiap2a
XM_043235705.1 mRNA downstream 842 7656032 ~ 7725519 (+) False baiap2a
XM_043235707.1 mRNA downstream 842 7656032 ~ 7725519 (+) False baiap2a
XM_043235708.1 mRNA downstream 842 7656032 ~ 7725519 (+) False baiap2a
TU26266 other upstream 1092879 6504915 ~ 6556750 (+) False G17590
TU26270 other upstream 1092879 6504915 ~ 6556750 (+) True G17590
TU26037 other upstream 1454607 6192740 ~ 6195022 (+) False LOC122341437
XR_006250506.1 other downstream 842 7656032 ~ 7725519 (+) False baiap2a
unassigned_transcript_276 other downstream 294571 7949761 ~ 7950417 (+) True LOC122331768
TU26829 other downstream 294614 7949804 ~ 7950310 (+) False LOC122331768
TU26831 other downstream 295664 7950854 ~ 7951364 (+) True G17985
TU26833 other downstream 304881 7960071 ~ 7962295 (+) False LOC122341279

Expression Profile