RNA id: XM_043229165.1


Basic Information

Item Value
RNA id XM_043229165.1
length 2231
RNA type mRNA
GC content 0.40
exon number 9
gene id LOC122331655
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 266330 ~ 278232 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atggagttcaTGGGAGAGTTAATACTCAGGAGAGGGAGCCCTCTGGTGGTGATTGGGAAGAGCCACAGAGACCGAACTAGTGACAAAATCCGGTTTCTTCATCATGGTAGTTTTACCAGTGTTTCTCACGGCCAGCAGATACAACTGGGACATTCTCTGTGGTCAAAAGATGggctGTTCACCTGTGTTCAGCAGATCCGTGTATTTAACTCTCATGATGCTTATCAATGCTCTACTGATCTATTTCTACATCACAGCTCTGGAGAACCAGAACGATGCTTTTGGATGGGGCTATATGCTTGTGTTTCTTCAGTTTCTCTGGACACTGATCGATTTCACCCACTCATTTTCATCATTCGATCTTCCCGTGTGACTGTGGTGTATGTGTTCGGATCAGTCGGTGTAGTTTTACTCAACTCTGTTGCTCTGATGACTGAAGTGATCCTGAAAACAGTTAATGGTGAAGGATTGACGGGAGACATGAGGATCTCAGTCTTCTCCACCGAGTTCATCTTCACTTTAATTCTCCTGGTATTTGAACCCTGGATCAAACCCTGTCTGGATTCGTGTCAGTCTCTTCAAAGCAGAGGCACTGGATCACAGAGTCAGGAATCTGAGCAGAACCCAGCAGCGGGTTGCGATGAAGCTCCAGCCGCTGGATCAGACCAGAAGCAGATCACGACAGAATCACACAAGATGAATCCTCTACTGAACGAACAAACCCAAGAGAACCAAGGGAGTGACGCGGCAGAGGAGATCGAGCTGAACTCAGTGATTACACAAACATAACCTGCAGACAGAGAAAAGCTCTTCACTGTGAGGAACACTTCAGTCTCCTTATGCATACGCTGGCTTGGATTTGTAAAtagctgtgtatatatatacacaggaTGTTTGAATGCCATTGCGCTTGTTCTTCTGTGTTTCATGTAATAGCTTTTATAACTAACTCTAACTGTAAACCAGCTTCAGCCGTCCTTCAAGATCAGAGCGCTATGATGTTAACATCTGTGGACTGATGTTTGAGTCTCGAGCTCACAGTGAAGGAGCGTCTCAAATCAATCAACCATTTTTATATAGtgattttaacaatacagactgtGTCAAGCACtgaaaagtattaaatatgagAATATAGGACATTTCAAGTCAGgaaaggaaccaaaaccccatcccttacagatttgagaaaaaaagttgtGGTCAGTTCTCCTCTCACTGGACACACAGCGCTTAATTTCTAGTTCAATTCAAACGCAGCTATATGTGCGAAGGACTTATTATGACTATTTAGCTTAATGTCCaacaattactattattattattgttatttcttaaTAGAACTGCATTTTCTTTATCTCTCTGCACTgccaaaaaatgacaataaaactaACTCTCACTATTACTGAAGTATGTGTAATGTGTGCAGCAATTTTATGTATAGACAGAAGATCTATATTCACTAAAAACAGCAGTatactgtatcccacaatgcaatgcatttcacTTATATCCAATGTAATCAAGAAGCAGAGGAGATGTATTTCTACTTCGCTTCATTAGATGGCAGCATCGTGTCTCAGAAACACTCAAGAAAAACAACTTAGTTTTGGTTGAAAGTAAATCAAAGAGCAGATTAAATAACTCACATTTCTGAAAGTTTTTGACACCAGCTTCTTGACATTTCTGTAAGAcgtgtacaaaataaataatgaaacgtATACCTggctcaataataataataaaaaaaaaagcggcaTTTCTATCACAATAtactttagaaatgttttttttgttacattttgacACACTCTCCTCTGGGAGATCCTCATGTAATTGTCCTCTCTACAACTCTGGTTCTTTATTGCATATTGCTTTATCCTTATTCTGCAGACGAGCAATTTTGTCTTTCCTTACTGTTCTGTAACATCTCTCATAGACACATGTGTCTGGATGTTATAAGGGTTCAATGGTGTGTGCGCTCCCCCCAGGCGTGGGGTGAATGGGTTTACGctacacttttgatacttgacAAGAAGTGTTTTCTTTGTCCAAAAGTATTCCTCATAAGTTCTTAACTTCCTTTTGATATCTCTATCTTATATAAGTACATATCTTTTTGGCATGTATACAACATGTGCcctcttttgtttcattggctagAGGGGTAAAACTCCTCTGAAGATGTCCATACACCATTGTATTTGGgaataaactttggagtaaGGATA

Function

GO:

id name namespace
GO:0006950 response to stress biological_process
GO:0005544 calcium-dependent phospholipid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22936 lncRNA upstream 58553 10442 ~ 207777 (+) True G15459
TU22955 lncRNA downstream 17212 295444 ~ 299321 (+) False LOC122330774
TU22977 lncRNA downstream 40366 318598 ~ 351269 (+) True G15478
TU23066 lncRNA downstream 43123 321355 ~ 354219 (+) True G15520
TU23071 lncRNA downstream 73732 351964 ~ 353083 (+) True G15524
TU23075 lncRNA downstream 83687 361919 ~ 367951 (+) True G15527
XM_043226671.1 mRNA upstream 47216 215085 ~ 219114 (+) True LOC122329952
XM_043229099.1 mRNA upstream 190688 73722 ~ 75642 (+) False LOC122331567
XM_043229161.1 mRNA upstream 252174 7079 ~ 14156 (+) True LOC122331645
XM_043226555.1 mRNA downstream 11210 289442 ~ 293412 (+) True LOC122329895
XM_043229411.1 mRNA downstream 172239 450471 ~ 452874 (+) True LOC122331907
XM_043229536.1 mRNA downstream 291092 569324 ~ 571953 (+) True LOC122332242
XM_043226167.1 mRNA downstream 293706 571938 ~ 610361 (+) False LOC122329695
XM_043226164.1 mRNA downstream 293707 571939 ~ 610361 (+) True LOC122329695
TU22968 other upstream 190696 73544 ~ 75634 (+) True LOC122331567
TU22959 other downstream 19663 297895 ~ 299321 (+) False LOC122330774
TU23138 other downstream 275466 553698 ~ 557081 (+) True G15563
TU23155 other downstream 347133 625365 ~ 635609 (+) False LOC122330407
XR_006248020.1 other downstream 476199 754431 ~ 768972 (+) False LOC122330463
TU23504 other downstream 727763 1005995 ~ 1009303 (+) False LOC122330135

Expression Profile