RNA id: XM_043229244.1


Basic Information

Item Value
RNA id XM_043229244.1
length 2750
RNA type mRNA
GC content 0.39
exon number 4
gene id LOC122331730
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 7974543 ~ 7977890 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aatgtattatttatatcttttcTCTAATTGCTTTgattttatgttaataaaataatttataataatgtttcaattcatctttttttcttgaaaaatgtttaaaggcTAAAAATCGCTAAAGCTGATACCATTTGGATAAACCTTTTTGAATATGCCctttttaaataatcctctTAATTTGTTCTGTTGGTCACTAATAAAAAAGGACCTCTGTACGTTTTGTTTGTCACACATTTACAGACTGTGTAATTGACATGTCTACATTGGCTTGTTGGGATAATGTTTCTTTGCACTGACAACAATGTTTTCCTTCTGATTTAACATAACTGCGTAAGTTCATAGTTAATGAAATCtttgaaaacaaattacattagGAAGTTAAGACGGTGAAAAAGGTGTGAAGATGTGGATTAGTAATCTGGCCCCTGTGTTTGCTCTGCTCTTTTTTAGTCTTGCTGGCTGTAATCTCACTGCTCAGTGTTGTGTGAGTTTATCATCAGCTCTACAATCCTCAAACTGTGTCCTGaaagagctggatctgagtaGCAATGACCTGCAGGACTCTTGTGTAAAATTTATTTCTGATGGACTAAAGAGTCGTAACTGTCACCTGGAGATATTGAGGTTGTCAGGCTGTATGGTGACGGAGCAAGGCTGTGGttatttgtcttcagctctgagtgaaaacccctcacacctgagagagctggatctgagctacaatcatccaggagattcaggagtgcaGCTGCTCAAACACAAACTGGAGGATCCAGACTACAAACTGCAGATACTCAaTGTGGATCATGGAGGAGAGAACATGATGAGAGCGGGACTACGAAAGTATGCCTGTgatctcacactggatccaaacacagcaaaccCTCGACTCATTCTCTCTGAGGAGAACAGGAAGATCACATGTGTGAAAGATCATCAGCCGtgtcctgatcatccagacagatttgataaCGATCCTCAGATTCTGTGTGTTGAGAGTCTgactggacgctgttactgggagactgaaTGGAAGAGACGTGCCGAAATATCAGTGTCATACACAGCTATCAACAGGAAAGGAGGGAGTGAATGTGAGTTTGGATTCAATGACAGGTCCTGGAGTCTGAACTGCTCTGATAAATTCTCTGTCTGTCACAACAAGAACGTCACTGATATACCTGCTGTGTGTTCATCCTCTAGTAGAGCAGGAGTGTATGTGGACGTGTCGGCCggctctctgtccttctacagtgtctctgacacacacacactcacacacttacacacatttaaCACCACATTCACTGAAGCCCTCTGTGCTGGATTTAGAGTTGATTCTGATTGTTCGGTGTCTCTGTGTGATATCAAATGATTTAGAGTCTCTCTGTAAATCCTGATgttcacatgcacacaaacgTATCAAATCTCACAtcgttacatttatattcattcgtTATTAGTTATTCTTTGTCATCCACCACTTATAAATCTTGGTGAGACAAACATAATGTTCTGAATCTTTAAGAAAGTGGTGAATACGTTATCTTAAGTATTTGTACATTAAAAACcctgttaatttaaaaaaactagtGCCTAGATTTGCCTACATAATACAGTGATTCTGCAGTACACTTACTGTTATATgtaactgtttattattatacactaaACAGTACTGTACTGTAGAAAATATAAGATGTACAGCATAACACTTTAGGTGTTTGATTGTCATTATAAAGTTTTTGTATTACTACTATAATCTCAAACTTTATGACTATAACCTCTTCTTCTAAAAAGGCATGATCAGAATTAGCATTTCTATTAGAAACAAATATATGTAGAGTTACAAATAATCTATAATCCTCTTTGTATCATTTGACGTGTCCATGAAAACTGCAGTTTTAATCGATGCATAATCATGTGATGGATAGCAGTTGAAATGAGGGCTAGATATGTGACGTGTAGAATGAAAGCTTATGACATATGCCATGTCACGGTGTGAATGAATGTTCGTGATTTTGATTATGGGATGTAGGAAACATTCTATAAAGTAAAGGACATTGCCGAGATGCTATCTCTAAATGGGATGgaaagtttgttttgtgttttttgtaatttatgcaCGGAAGAAGAGCCGAACTGGGTTTAAACACCTTCGGGGCAAGCCCAAACCAGCTGTTTAAGACCTCAAAGCAAGAAGCTTTcgaggagagaaaaagaaaaggaagagtTTTTCTCCATCGGAACAGTGCTTACTCCATCGCTTCCGCTGTAACAACTCCACAATCCCTCTGTATGGAACGACTGGAAGCTGCCGCAACGTGAATCACTGACCTGCTCCAGCGTTCCTTCAGCGAGACCTCCATTGACCCTCTGCATCTTCAACTCTAGAAACTTCCAAAGCTGAGCAGCCCTACGACGAGAGACTGTCACGATCAAATCACCCTGGGAATCCCAAAGACGTTATCCAAGACGAGCGCCACAACCAATCAGAGAAGCCAGGATTCCCTCAGAGAAGCCAGCAATCAGTTTTGTTAACACAGACAAAGTTTCCCTCTCTTAACTCAGTGGTGCAAAGTGGAAAGCTAGGACCTCTGCTTTGATCAATATTTTGATCTTAGAACTAGCAAATAGACTTTGGGCTTCATTAATCAATTCCTTCCCAAACTGTTCGTATGCGTGTGTTCATTCTTAGCTTAGTCATGTTAGTGGAAGTAAAATTCAATAAACTTCAGTTATTAAGAGTC

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26820 lncRNA upstream 50914 7915862 ~ 7923629 (+) True G17976
TU26817 lncRNA upstream 74396 7899911 ~ 7900147 (+) True G17973
TU26768 lncRNA upstream 128498 7845224 ~ 7846045 (+) True G17937
TU26767 lncRNA upstream 130326 7843581 ~ 7844217 (+) True G17936
TU26765 lncRNA upstream 131575 7842339 ~ 7842968 (+) True G17934
TU26837 lncRNA downstream 6590 7984480 ~ 8085629 (+) True G17990
TU26839 lncRNA downstream 6590 7984480 ~ 8145025 (+) False G17990
TU26844 lncRNA downstream 11236 7989126 ~ 8092242 (+) True G17993
TU26845 lncRNA downstream 13209 7991099 ~ 8092242 (+) False G17993
TU26849 lncRNA downstream 13209 7991099 ~ 8091669 (+) False G17993
XM_043234654.1 mRNA upstream 11567 7960077 ~ 7962976 (+) True LOC122341279
XM_043234650.1 mRNA upstream 132973 7838956 ~ 7841570 (+) True LOC122341274
XM_043232314.1 mRNA upstream 153465 7808243 ~ 7821078 (+) True slc27a1a
XM_043232334.1 mRNA upstream 166781 7801296 ~ 7807762 (+) False ptger1c
XM_043232326.1 mRNA upstream 166781 7804679 ~ 7807762 (+) True ptger1c
XM_043234655.1 mRNA downstream 172853 8150743 ~ 8152894 (+) True LOC122341282
XM_043231970.1 mRNA downstream 177481 8155371 ~ 8166377 (+) True srebf2
XM_043231979.1 mRNA downstream 177481 8155371 ~ 8166377 (+) False srebf2
XM_043229152.1 mRNA downstream 200624 8178514 ~ 8181737 (+) True nol12
XM_043233966.1 mRNA downstream 206658 8184548 ~ 8189293 (+) True LOC122339678
TU26834 other upstream 8349 7964749 ~ 7966194 (+) True G17988
TU26833 other upstream 12248 7960071 ~ 7962295 (+) False LOC122341279
TU26831 other upstream 23179 7950854 ~ 7951364 (+) True G17985
unassigned_transcript_276 other upstream 24126 7949761 ~ 7950417 (+) True LOC122331768
TU26829 other upstream 24233 7949804 ~ 7950310 (+) False LOC122331768
TU26879 other downstream 78769 8056659 ~ 8059857 (+) True G18008
TU26858 other downstream 172880 8150770 ~ 8152825 (+) False LOC122341282
TU26861 other downstream 172880 8150770 ~ 8152825 (+) False LOC122341282
TU26907 other downstream 282194 8260084 ~ 8563376 (+) False LOC122342110
TU26932 other downstream 535459 8513349 ~ 8516454 (+) False G18048

Expression Profile