RNA id: XM_043229410.1


Basic Information

Item Value
RNA id XM_043229410.1
length 2186
RNA type mRNA
GC content 0.51
exon number 11
gene id hrob
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 14672317 ~ 14678865 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTTGTGCTGAGCCCGGCAACAAAACACGTCACCTGCGTACGTCACGCACGTCGTGAGTGTTTGAACGTGGCGCCGCGAAGgcgaaaataaaaaagagattaCGCGATGTATGCTCTGTGCTTTTAAATGTCCGCAGATCACACGGTAACGAAACCTTGAACGAATGCTTGCTTACGTTAACAGTCGATGCTTGTCGCGTGATATATCCGCTCTCGTTAACTGAACAGACATGACGGCCACGGCTTGTAATAAATGGAAGGGCTTGTTCACCGTTGGAGAGGAGTTTGATGATGAGGATTTGCTTGAAGCTGATTGGACGTGTCCACCTGAGCAGGCATGTAGTACAGCTTCTTCTGTAGCACCATCATCTGAATCCTCACATGTGCAGCAGAGCTCTGTTAACTTGTCAAATGCGTCCGAATCTGGTTCGGTTCTGACTCTTCGTACCCCAGCATGTGGCACTATCAGTGCCCTACCAGATCTCTCCATGCCCTGCCATCAGTCAATCTCTGCATCCGTTTCTTCTCTCCGATTGCCAGTGTTATTCTTGCAACCTCCCTCTGAACCAATAAACCCTCCACCCCAGGAGTCTTTTAGAGTCCTACAGAGAGACCTCCCTCCTCAAGATGACTTTGATGACTGGGACGTGGATCTGGAGGAACTGGATAGCATTCCTCAAGTGGTTTCTGAGCCACAAAATAATCCAGCTGCAcccttaaaaaacatttcacccGCTAAACGCATGAGGCCGTCAGCGCCAGAAGTGTCCTCTCATGGAAGGTCCGCCGCCATCTCGTCAGTGTCCGTTACACGGCCCTTAGTCAACACCTCATTCGTGTCCATTATCCAAGGCCCCATGAATCCATCTACTTCGCGGAATGCAAATCTCATGCATGGTCCCACAACTCCAGCCTCGCGATTCCCCAGACCTGTGACTCCCAGGCCTCCAGTTGCGTCACCTCAGCTGGGGGCTTCATCACATAGGACCCCGCTGAAGCCTAGAGGGTCTCTCTTCCACTCTGTGTGTTCCACTACGGACTCCTCTTCCACATTTACACCTCGTGCTCTCAACACGCCTGTCCTGACCAATCACCTGGTCCAGCTGGTGTCTGCAGCCAATAAGACCCCTCAGAGACCACAAAGCCGCATGATGCCAGCCAAGGCACGCCGTTTTCCTGGCCCGGCCGGAGCACTTCCACTACAGGCCAGCGGACGAAGTCTTGATGACATTGTTGTGGCGGTTCCTCAGACGCCTGCACATGGAGCTGTTGCTCGGCTAAGAAGTGATGTTTCCAGCTCTCAGGTGATTGAGGAAGAGGAGTTCAGCAGGGGTCCGTGGGCAGTGATGAAGACTGAGATGGGATTGGACGAGAAGAACCCTTCTTGCTTTCTTCACTCTTACAGTGTTGTCATGGTACTCCGCAAGGCTGCTCTCAAGCAGCTAGCCAAGAATAAGGTCCCTAATATGGCTGTCGTCTTGAAGAgtatcacgcacacacatgcagatgCAAAGGCCGTCTTCAGAGATCCAACAGGTGAGATGCAGGGCACAGTTCATCGTCGCCTGGTGGAGGAAAGACTGGGAGAGCTCAAGACAGGAGCTGTGTTGCTACTCAAACAAgtggGTGTGTTTTCACCATCACATCGAAATCACTACCTGAACGTCACACCCAATAACCTACTCAGGATATACCCGCCTGACGGGGTCTTCCACAACTCCCAGCCATCCCACTCTCCACTGGAGCTTACGTTGCATAGTGAATCCACAAGGCCTGCAGGGGGCCCCGTGTCTCTGATGGAGCTCCACTTTGATGATGAAGACGACAGTGAAAATGTGGTTGAGGAAAACCTGGCTTCAGATGGTTTAGACACTGCAGCTGTCTCTAATGAGCTCTGTAAAGCACCTACAGTGTCCGGACAAACGGGAGACGCAGCATGGGACACAGaTGACCTTGATGAGCTGCTCGGAGAGTTACCTGCGGAGGCATATGATGCACTACATTAATCACATGGTCACTTTAAAAGGAAAGTTATAGTCATATTATAACCATGCACACCAATAGACGAGCATTACCTGCTACCCAGGCTACTGTTCAGTTTTTGTGTAAACcttttgtaaatatgtacacGAATCGCTTGTCTCTTGCATAAATTGAAAGAATAAATACCTGATGGGACCTGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006249714.1 lncRNA upstream 5265 14664842 ~ 14667052 (+) True LOC122338121
TU30018 lncRNA upstream 43001 14626792 ~ 14629316 (+) True G20168
TU30016 lncRNA upstream 53483 14617262 ~ 14618834 (+) True G20166
TU29989 lncRNA upstream 214411 14379624 ~ 14457906 (+) True G20146
TU30044 lncRNA downstream 241380 14920245 ~ 14969285 (+) True G20180
TU30048 lncRNA downstream 292147 14971012 ~ 14971661 (+) True G20183
TU30039 lncRNA downstream 293434 14972299 ~ 14989992 (+) True G20179
TU30054 lncRNA downstream 311364 14990229 ~ 14993037 (+) True G20188
TU30185 lncRNA downstream 450816 15129681 ~ 15138900 (+) True G20269
XM_043233827.1 mRNA upstream 758 14669481 ~ 14671559 (+) True rps11
XM_043235121.1 mRNA upstream 14841 14642965 ~ 14657476 (+) False map3k14a
XM_043235122.1 mRNA upstream 14841 14646521 ~ 14657476 (+) True map3k14a
XM_043235120.1 mRNA upstream 14841 14646704 ~ 14657476 (+) False map3k14a
XM_043235827.1 mRNA upstream 63593 14603174 ~ 14608724 (+) True gosr2
XM_043235846.1 mRNA downstream 5781 14684646 ~ 14957726 (+) True asic2
XM_043235009.1 mRNA downstream 350958 15029823 ~ 15050437 (+) True kcnj19a
XM_043235668.1 mRNA downstream 414091 15092956 ~ 15099097 (+) True tmem98
XM_043233603.1 mRNA downstream 571669 15250534 ~ 15257035 (+) True zgc:100868
XM_043233604.1 mRNA downstream 590935 15269800 ~ 15280113 (+) True zgc:165423
TU30025 other upstream 749 14664919 ~ 14671568 (+) True G20172
XR_006250537.1 other upstream 1637 14670596 ~ 14670680 (+) True LOC122342191
XR_006250538.1 other upstream 5788 14666446 ~ 14666529 (+) True LOC122342192
XR_006250536.1 other upstream 6395 14665838 ~ 14665922 (+) True LOC122342189
XR_006250545.1 other upstream 6747 14665486 ~ 14665570 (+) True LOC122342199
TU30209 other downstream 470247 15149112 ~ 15184873 (+) True G20286
TU30221 other downstream 489473 15168338 ~ 15169258 (+) True G20295
TU30661 other downstream 1501045 16179910 ~ 16205168 (+) False gna12a
TU30773 other downstream 2011838 16690703 ~ 16699482 (+) True LOC122331507
TU30774 other downstream 2011838 16690703 ~ 16699482 (+) False LOC122331507

Expression Profile