RNA id: XM_043229414.1


Basic Information

Item Value
RNA id XM_043229414.1
length 2365
RNA type mRNA
GC content 0.47
exon number 16
gene id LOC122332086
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12974708 ~ 12980093 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGATGACAAGCATAGAGAAGAAGACCTAGTTGTGGACGGTGCGGGCTGCATGTATTATATccttaaatttgtttattttcatttatttatctatttttggAAGGCGAATTTACTCGGTTTATCAAATACCGCAAAGGGGAACAATATCAGCAGCCGGACGAGGTGATAAGTGTTATAAAGTGAAGCTACGTAAAGCATCGGATGTTATCTGGTTAGCCGGTTGAAGGTTATTAACGGGCCTTCTTGCTCTGCAGTGATGACGTCGCTGGGTAGCAGCAGTTCCTCCACAACAGAGTATGTTGTACGAGTTCCTAAAAACACCAGTAAGAAGTACAACATAATGGCTTTCAATGCTGGTGATAAAGTCAGTTGTTCCACATGGACTCAGGCTCGTATGGAGCGTGACATGAGCAACAGGCGTATATATGGTGAGGAGGAGACCCAGGAGGGGGCAGCAGGCAGTGAATTTggaaagaaacagagagaggaagCACGGAGGAAGAAGTATGGTATCGTTACAAAGGAGTTCAAGGTGGAGGACCAGCCCTGGATCCTTAAAGTTAATGGCAAGGCAGGAAGAAGATTCAAGGGTCTGAAAAAAGGTGGAGTCACAGAGAATGCTTCCTACTACATCTTCACACAGTGTCCCGATGGGGCCTTTGAGGCGTTTCCAGTGCACGCTTGGTACAACTTCACACCGCAGGCCAAACACCGCACGCTCACAGCAGAGGAGGCAGAAGAGGAATGGGGAAGGAGAAACAAAGTGGTGAATCACTTCAGTATCATGCTTCAACGACGCCTCCGAGAACAGGAGCGAGGAGAGGACgatgaggaggaaaaggagagaagggggaagaaaaaaaagaagaagggaGGCAGGGGAGGAGACCTGCGCATACATGACCTTGAGGATGATTTGGAAATGAGCAGCGATGAGAGCGACGGCAGCAATGGAGACGATGATGAAGCCAAGTCAAAAGCTAAAAAGGACAAAGGCCCCAAAGGCAagggaaagaagaagaagaaaaagggcAGTGACCTGGAAGGGATCGAGGATAGTGATGATGGTGACTTTGAGGGGTTGGAGGTGGACTACATGTCTGATGAGAGCAGTTCTGAGGAAGAAGAGCCGGAGAAGACCAAACCCAACAAGGGAGAGGATGTCCCTAAAGggATTGATGAAATGTCTGACAGCGAGGAAGAGAGTGAGGAAGAAAACAAGAATGAAGAAGAAGGcaaggaggaagaagaggaagaggatggaAAGAAGACACCAGTGCAgggggaaaagaagaaaaagaaagataaagACAGCAGTGGCGAGTCCGACAGCTCTGAGGACAGCGATATTGAAGGAGAGGCAGCTTCAGCACTGTTCATGGTGAAGAAGCGCACTCCTCCTAAACGAGGGGGTGGTCGTGGCTCAGCAGGTAGTTCAAGAACAGGAAGTCGGCCTGGCACACCTTCTATTGACAATGCTGCCACTTCCAACACTCTCCGTGCCGCTGCCAACAAACTGGAGCAAGGTAAGCGTCAGACAACTGTGCCTAGCTCAGAGACTCCAGCGGCCAAGAGGTTAAAGATGGAGCCCAGCCCTCAGAGCTCTTCAGGGAAGAGCACACCCCAACCAGCATCAGGAAAATCCACTCCCAGCTCCAGTGATGTGCAGCTGACAGAGGATGCCGTGCGCAGGTATCTCATCAGGAAGCCCATGACCACTAAAGACCTGCTGAAGAAGTTCCAGACTAAGCGCACAGGCCTTAGCAGCGAGCAAACGGTCAACGTGCTCGCCCAGATCTTGAAGAGGCTCAACCCAGAGAGGAAGAACATCAATGACAAGATGCACTTCTACCTCACCGAGTGAGCCCAGCTTAAGAGAGAGTGAAACCGAACCCTCGTCACCAGCAGCACCTCCTACAGCTCGTTTAGGTTAAGGCTTCCAACTTGATCTGATATTTGTCGTTTTGCTTGCAACCTTTCACAATAAACAGTAGtattaaagtgctgcaaactgagTTCCAGATGAGAATGCTGGAGGTCCGAAGAGTGAAAACACATAGAAGACTGAGAAGCAAGATGGAGTaggattttgtattttgtaatgtgCATAGGAAAGATGTGTTTGTAAATCCCACATCTATGCCTGTTAATGCCTGACATTTTCATACACTTCAACATATCaacataatgattttttttcatgaaaaccTGCTGAATTTTGAGAGAGGGTCTTTACACAGAGAATACAATCATCATATTCTCTTGGTAAagaatttgttgtttttctttgtttttactgGTTAAGGTAAAACTTTTGAAGGAAATTTCTCCTTTGGTAGTCCATTAAATTTGTTCCAAaattaa

Function

GO:

id name namespace
GO:0006367 transcription initiation from RNA polymerase II promoter biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K03138 TFIIF1, GTF2F1, TFG1; transcription initiation factor TFIIF subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29260 lncRNA downstream 71798 12900781 ~ 12902910 (-) True G19672
TU29337 lncRNA downstream 87754 12864310 ~ 12886954 (-) False G19677
TU29341 lncRNA downstream 88501 12864310 ~ 12886207 (-) False G19677
TU29346 lncRNA downstream 109546 12864310 ~ 12865162 (-) True G19677
TU29186 lncRNA downstream 283376 12689620 ~ 12691332 (-) False cacna1aa
XR_006248461.1 lncRNA upstream 92467 13072560 ~ 13072828 (-) True LOC122332187
TU29374 lncRNA upstream 110578 13090671 ~ 13091152 (-) True G19703
TU29406 lncRNA upstream 145428 13125521 ~ 13129608 (-) True G19726
TU29519 lncRNA upstream 377486 13357579 ~ 13357789 (-) True G19811
TU29594 lncRNA upstream 653466 13633559 ~ 13633785 (-) True G19872
XM_043228204.1 mRNA downstream 211618 12681990 ~ 12763090 (-) True cacna1aa
XM_043225878.1 mRNA downstream 312860 12571028 ~ 12661848 (-) False LOC122329559
XM_043225869.1 mRNA downstream 312965 12571028 ~ 12661743 (-) False LOC122329559
XM_043225865.1 mRNA downstream 317874 12571028 ~ 12656834 (-) False LOC122329559
XM_043225857.1 mRNA downstream 317874 12571028 ~ 12656834 (-) True LOC122329559
XM_043229457.1 mRNA upstream 103116 13083209 ~ 13083734 (-) True LOC122332149
XM_043234627.1 mRNA upstream 127738 13107831 ~ 13111379 (-) True LOC122341259
XM_043234774.1 mRNA upstream 150843 13130936 ~ 13134638 (-) False yipf2
XM_043234773.1 mRNA upstream 150843 13130936 ~ 13134638 (-) True yipf2
XM_043234946.1 mRNA upstream 193258 13173351 ~ 13227138 (-) True tnrc6c1
TU29176 other downstream 294908 12622783 ~ 12679800 (-) True G19606
XR_006250490.1 other downstream 1053941 11913002 ~ 11920767 (-) False LOC122341756
TU28873 other downstream 1111745 11853748 ~ 11862963 (-) True G19383
TU28830 other downstream 1246733 11715722 ~ 11727975 (-) False limd2
unassigned_transcript_278 other upstream 994 12981087 ~ 12987204 (-) True LOC122331923
unassigned_transcript_279 other upstream 7257 12987350 ~ 12992329 (-) True LOC122331939
TU29331 other upstream 25903 13005996 ~ 13068190 (-) True G19676
TU29371 other upstream 66948 13047041 ~ 13047494 (-) True G19700
unassigned_transcript_280 other upstream 70193 13050286 ~ 13050861 (-) True LOC122332129

Expression Profile