RNA id: XM_043229457.1


Basic Information

Item Value
RNA id XM_043229457.1
length 443
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC122332149
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 13083209 ~ 13083734 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCAAATCAAAAccgtgaatgtgtgtttagTATTTATGTGCCGCTGACTGGATCTGAAGTGTTACATCACCACTTTCAAGATGAAGAGTGCACTCTGTTTACTGCTGCTCTCATTCAGCTTACAACGTACAAAATGTCAAAGTATGGAGTCCATTGAAAGCACAGTAGTGAAAAAGCCTGGAGAAACTCTGGCTCTGTCCTGTAGAGGATCTGGGTTCAGCTTTAGCTGCTGTAGCATGCACTGGATCAGACAACAAGCTGGAAAACCCCTTGTGTGGATGGGACGTGTTCATAGTGGTGGCAGCGGCAATGACTACTCTGACTCTTTCAACAGACGAATTGAAATCACCAGAGATAATTCAAAGAATATGGTTTATCTGAAACTATCAGGCCTGACAGCAGAAGACTCAGCCgtgtatttttgtgcaaagCAAGCACAGTGA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006248461.1 lncRNA downstream 10381 13072560 ~ 13072828 (-) True LOC122332187
TU29260 lncRNA downstream 180299 12900781 ~ 12902910 (-) True G19672
TU29337 lncRNA downstream 196255 12864310 ~ 12886954 (-) False G19677
TU29341 lncRNA downstream 197002 12864310 ~ 12886207 (-) False G19677
TU29346 lncRNA downstream 218047 12864310 ~ 12865162 (-) True G19677
TU29374 lncRNA upstream 6937 13090671 ~ 13091152 (-) True G19703
TU29406 lncRNA upstream 41787 13125521 ~ 13129608 (-) True G19726
TU29519 lncRNA upstream 273845 13357579 ~ 13357789 (-) True G19811
TU29594 lncRNA upstream 549825 13633559 ~ 13633785 (-) True G19872
TU29639 lncRNA upstream 702275 13786009 ~ 13792602 (-) True gng13b
XM_043229414.1 mRNA downstream 103116 12974708 ~ 12980093 (-) True LOC122332086
XM_043228204.1 mRNA downstream 320119 12681990 ~ 12763090 (-) True cacna1aa
XM_043225878.1 mRNA downstream 421361 12571028 ~ 12661848 (-) False LOC122329559
XM_043234627.1 mRNA upstream 24097 13107831 ~ 13111379 (-) True LOC122341259
XM_043234774.1 mRNA upstream 47202 13130936 ~ 13134638 (-) False yipf2
XM_043234773.1 mRNA upstream 47202 13130936 ~ 13134638 (-) True yipf2
XM_043234946.1 mRNA upstream 89617 13173351 ~ 13227138 (-) True tnrc6c1
XM_043235884.1 mRNA upstream 201642 13285376 ~ 13348706 (-) True sept9a
unassigned_transcript_281 other downstream 2588 13080070 ~ 13080621 (-) True LOC122332138
TU29331 other downstream 15019 13005996 ~ 13068190 (-) True G19676
unassigned_transcript_280 other downstream 32348 13050286 ~ 13050861 (-) True LOC122332129
TU29371 other downstream 35715 13047041 ~ 13047494 (-) True G19700
unassigned_transcript_279 other downstream 90880 12987350 ~ 12992329 (-) True LOC122331939
unassigned_transcript_282 other upstream 292 13084026 ~ 13084966 (-) True LOC122341303
unassigned_transcript_283 other upstream 2641 13086375 ~ 13087267 (-) True LOC122332140
unassigned_transcript_284 other upstream 8476 13092210 ~ 13092846 (-) True LOC122341304
unassigned_transcript_285 other upstream 13395 13097129 ~ 13100644 (-) True LOC122341774
TU29676 other upstream 721634 13805368 ~ 13805978 (-) True G19933

Expression Profile