RNA id: XM_043229474.1


Basic Information

Item Value
RNA id XM_043229474.1
length 1932
RNA type mRNA
GC content 0.49
exon number 14
gene id LOC122332168
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12895326 ~ 12900216 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGACAAGCATAGAGAAGAAGACCTAGTTGTGGACGGTGCGGGCTGCATGTATTATATccttaaatttgtttattttcatttatttatctatttttggAAGGCGAATTTACTCGGTTTATCAAATACCGCAAAGGGGAACAATATCAGCAGCCGGACGAGGTGATAAGTGTTATAAAGTGAAGCTACGTAAAGCATCGGATGTTATCTGGTTAGCCGGTTGAAGGTTATTAACGGGCCTTCTTGCTCTGCAGTGATGACGTCGCTGGGTAGCAGCAGTTCCTCCACAACAGAGTATGTTGTACGAGTTCCTAAAAACACCAGTAAGAAGTACAACATAATGGCTTTCAATGCTGGTGATAAAGTCAGTTGTTCCACATGGACTCAGGCTCGTATGGAGCGTGACATGAGCAACAGGCGTATATATGGTGAGGAGGAGACCCAGGAGGGGGCAGCAGGCAGTGAATTTggaaagaaacagagagaggaagCACGGAGGAAGAAGTATGGTATCGTTACAAAGGAGTTCAAGGTGGAGGACCAGCCCTGGATCCTTAAAGTTAATGGCAAGGCAGGAAGAAGATTCAAGGGTCTGAAAAAAGGTGGAGTCACAGAGAATGCTTCCTACTACATCTTCACACAGTGTCCCGATGGGGCCTTTGAGGCGTTTCCAGTGCACGCTTGGTACAACTTCACACCGCAGGCCAAACACCGCACGCTCACAGCAGAGGAGGCAGAAGAGGAATGGGGAAGGAGAAACAAAGTGGTGAATCACTTCAGTATCATGCTTCAACGACGCCTCCGAGAACAGGAGCGAGGAGAGGACGATGAGGAGGAAGGAGAGAAgggggggaagaaaaaaaagaagaagggaGGCAGGGGAGGAGACCTGCGCATACATGACCTTGAGGATGATTTGGAAATGAGCAGCGATGAGAGCGACGGCAGCAATGGAGACGATGATGAAGCCAAGTCAAAAGCTAAAAAGGACAAAGGCCCCAAAGGCAagggaaagaagaagaagaaaaagggcAGTGACCTGGAAGGGATCGAGGATAGTGATGATGGTGACTTTGAGGGGTTGGAGGTGGACTACATGTCTGATGAGAGCAGTTCTGAAGAAGAAGAGCCGGAGAAGACCAAACCCAACAAGGGAGAGGATGTCCCTAAAGggatTGATGAAATGTCTGACAGCGAGGAAGAGAGTGAGGAAGAAAACAAGAATGAAGAAGAAGGcaaggaggaagaagaggaagaggatggaAAGAAGACACCAGTGCAgggggaaaagaagaaaaagaaagataaaggcaatctctttttgcattttttctttgtatttgaaAGATCCGACAGCTCTGAGGACAGCGATATTGAAGGAGAGGCAGCTTCAGCACTGTTCATGGTGAAGAAGCGCACTCCTCCTAAACGAGGGGGTGGTCGTGGCTCAGCAGGTAGTTCAAGAACAGGAAGTCGGCCTGGCACACCTTCTATTGACAATGCTGCCACTTCCAACACTCTCCGTGCCGCTGCCAACAAACTGGAGCAAGGTAAGCGTCAGACAACTGTGCCTAGCTCAGAGACTCCAGCGGCCAAGAGGTTAAAGATGGAGCCCAGCCCTCAGAGCTCTTCAGGGAAGAGCACACCCCAACCAGCATCAGGAAAATCCACTCCCAGCTCCAGTGATGTGCAGCTGACAGAGGATGCCGTGCGCAGGTATCTCATCAGGAAGCCCATGACCACTAAAGACCTGCTGAAGAAGTTCCAGACTAAGCGCACAGGCCTTAGCAGCGAGCAAACGGTCAACGTGCTCGCCCAGATCTTGAAGAGGCTCAACCCAGAGAGGAAGAACATCAATGACAAGATGCACTTCTACCTCACCGAGTGAGCCCAGCTTAAGAGAGAGTGAAACCGAACCTCGTCACCAGCAGCAC

Function

GO:

id name namespace
GO:0006367 transcription initiation from RNA polymerase II promoter biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K03138 TFIIF1, GTF2F1, TFG1; transcription initiation factor TFIIF subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29141 lncRNA upstream 208955 12682818 ~ 12686371 (+) True G19575
TU29145 lncRNA upstream 213761 12681258 ~ 12681565 (+) True G19579
TU28784 lncRNA upstream 381605 12511926 ~ 12513721 (+) True G19326
TU28785 lncRNA upstream 381605 12511926 ~ 12513721 (+) False G19326
TU28700 lncRNA upstream 645329 12246208 ~ 12249997 (+) False LOC122341822
TU29234 lncRNA downstream 97001 12997217 ~ 13056733 (+) True G19656
TU29204 lncRNA downstream 105594 13005810 ~ 13096854 (+) True G19629
TU29202 lncRNA downstream 159944 13060160 ~ 13061606 (+) True G19627
TU29211 lncRNA downstream 160901 13061117 ~ 13072599 (+) True G19636
TU29199 lncRNA downstream 171917 13072133 ~ 13076694 (+) True G19624
XM_043235716.1 mRNA upstream 123144 12770572 ~ 12772182 (+) True alkbh7
XM_043228192.1 mRNA upstream 215569 12678396 ~ 12679757 (+) True ier2a
XM_043225909.1 mRNA upstream 218663 12661681 ~ 12676663 (+) False LOC122329583
XM_043229415.1 mRNA downstream 72261 12972477 ~ 12974627 (+) True LOC122332118
XM_043234624.1 mRNA downstream 203060 13103276 ~ 13107847 (+) True aldh3b1
XM_043234628.1 mRNA downstream 212261 13112477 ~ 13114856 (+) True si:dkey-204f11.64
XM_043234772.1 mRNA downstream 215815 13116031 ~ 13129608 (+) False carm1
XM_043234771.1 mRNA downstream 215817 13116033 ~ 13129608 (+) True carm1
unassigned_transcript_277 other upstream 7265 12887157 ~ 12888061 (+) False LOC122332158
XR_006250478.1 other upstream 366523 12519837 ~ 12528803 (+) False gtpbp1
TU28786 other upstream 381605 12511926 ~ 12513721 (+) False G19326
TU28787 other upstream 381605 12511926 ~ 12513721 (+) False G19326
XR_006249244.1 other upstream 582336 12303364 ~ 12312990 (+) False nbr1b
TU29613 other downstream 798358 13698574 ~ 13702353 (+) False rbbp6
unassigned_transcript_286 other downstream 1013407 13913623 ~ 13913694 (+) True trnat-cgu
TU29734 other downstream 1149274 14049490 ~ 14053032 (+) True G19973
TU29797 other downstream 1218251 14118467 ~ 14119570 (+) True G20015
XR_006248644.1 other downstream 1355274 14255490 ~ 14267791 (+) False abcc1

Expression Profile