RNA id: XM_043229689.1


Basic Information

Item Value
RNA id XM_043229689.1
length 1556
RNA type mRNA
GC content 0.45
exon number 4
gene id nkiras2
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 19509088 ~ 19511507 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAGGAGGGCGCTCTTCAGCTGAACGGAACTGGTGTCAAATTTCGTCGAAGGCTGAAATCTGACATAAACAGGAAGAGAGTACGTGTGTTTGTATACTTTGATGAAGTCTGCGCGGGTTTAAGTGATCATGGGCAAGAGCTGCAAGGTGGTGGTGTGCGGCCAGGGGTCAGTGGGGAAAACCGCGGTTCTGGAGCAGTTACTGTACGCCAACCATGTCGCAGGTTCGGAGACCATGGAGACGCTTGAGGACATTTACATCGGGTCTGTGGAGACGGACCGCGGCACCCGAGAGCAGGTGCGGTTTTACGACACGCGAGGACTGCGCGACGGTCACGAGTTTCCGCGGCACTACTTCACGTTCGCCGACGGCTTCGTGCTCGTCTACAGCATCGACAGCAAAGAGTCCTTCAAGCGCGTAGAGGCTCTGAAGAAAGACATCGACCGCTGCCGTGACAAAAAAGAGGTGACGATTGTCGTTGTGGGTAATAAGCTGGACCTGCAGGATCAGAGGAGAGTGGACAGTGAAGCGGCTCAGCAGTGGGCACGGCAGGAGAAGGTCAGGCTGTGGGAGGTCTCCGTGACCGACAGGCGAACGCTCATCGAGCCCTTCGTCCACCTGGCCAGCAAAATGACCCAGCCTCAGAGCAAATCCACCTTCCCACTCAGCCGCAACAAGAACAAGGGCAGCGGCTCCCTGGACAGCTAGACACGGAGAAGATGGCAATAGCGCTGGCAGAGGAACATAAAGATACGTTAGAAGAGCGACGCCGGGCAAATCTCTAAAGAGTGACATCAACAGACGCTCGATTTTatatctttcaaaacatttgaactTGGAGTGCCGTTATAAGTTTAGCACACTGTATGAAGTTACTGCATTAATGAAGTTTTATATTCTTAAACAGGATAGAATCCATGTGTTGCTGTGATATATTTATCTCATGCTTATCTCAAAGCAACCGACTGACAAAAATACTGCTTTtacactgaaatatatatatatatatatatatatatatacctctaCATTGCAAAACGTTGTTATATCTTATGAGAAATCATCTATTATGTTCTATTATGACATATTTAATGAGATTTGTGCCATGACGACTGCTCTCTTGTGACGTCAACTTGACAGAAGGTTGTCTTAATCGAGTTAAGGAGACCGCGTGAATGTTTTGCTTATTTTCAGGTGTTCATATTTTACGTCGGACACATTCCTATACAAATGCTTACTGATTTATTCCATAAGAACACCCAAGTAAGTGAAATTTGTGTCTGTTTGATTGTGCGTGAGAGTTCACCGCTGTGCCATTGTACTTTTAACCCCGATGACTGCATTTCTTGAGTATTCAGTCATATTGTGTAACGTTAGCTTTTAGTAGTGAACCTATACATTTCTGTTCTGGAAAAAGTATGACCCATAAAGATCTGACTCTTATTTTTAGCAGAGATCGCTTTCACATGCATTTTGACAtgtctgtttaaaatgttttgtctgaAACAAAGACTGTATAAGCAGCTTTTTCGTATCTTAATAAAGATATCGATCACA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K17197 NKIRAS; NF-kappa-B inhibitor-interacting Ras-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31632 lncRNA upstream 17465 19491155 ~ 19491623 (+) True G21277
TU31631 lncRNA upstream 18493 19490129 ~ 19490595 (+) True G21276
TU31630 lncRNA upstream 19066 19489773 ~ 19490022 (+) True G21275
TU31590 lncRNA upstream 24704 19483501 ~ 19484384 (+) True G21246
TU31624 lncRNA upstream 36401 19470999 ~ 19472687 (+) True G21269
TU31654 lncRNA downstream 40106 19551613 ~ 19623289 (+) True G21295
TU31987 lncRNA downstream 278139 19789646 ~ 19789865 (+) True G21539
TU31988 lncRNA downstream 279071 19790578 ~ 19790781 (+) True G21540
TU31989 lncRNA downstream 280019 19791526 ~ 19792919 (+) False G21541
TU31991 lncRNA downstream 280019 19791526 ~ 19792919 (+) False G21541
XM_043235343.1 mRNA upstream 54773 19451411 ~ 19454315 (+) True si:ch73-141c7.1
XM_043235344.1 mRNA upstream 59426 19447171 ~ 19449662 (+) True hsd17b1
XM_043235342.1 mRNA upstream 63191 19443220 ~ 19445897 (+) True LOC122341749
XM_043235801.1 mRNA upstream 91197 19409591 ~ 19417891 (+) True rabep2
XM_043235803.1 mRNA upstream 100404 19403562 ~ 19408684 (+) True si:ch211-11k18.4
XM_043233601.1 mRNA downstream 406163 19917670 ~ 19921271 (+) False aspdh
XM_043233600.1 mRNA downstream 406699 19918206 ~ 19921271 (+) False aspdh
XM_043233599.1 mRNA downstream 406702 19918209 ~ 19921271 (+) True aspdh
XM_043233554.1 mRNA downstream 419226 19930733 ~ 19941580 (+) True pold1
XM_043234687.1 mRNA downstream 475999 19987506 ~ 19998472 (+) True LOC122341334
TU31603 other upstream 105912 19399832 ~ 19403176 (+) False ypel3
TU31597 other upstream 105912 19399871 ~ 19403176 (+) False ypel3
TU31600 other upstream 105912 19399871 ~ 19403176 (+) False ypel3
TU31536 other upstream 216747 19291445 ~ 19292341 (+) True G21213
TU31520 other upstream 515891 18991458 ~ 18993197 (+) False G21202
TU32077 other downstream 552983 20064490 ~ 20068001 (+) False LOC122341338
TU32078 other downstream 554623 20066130 ~ 20068001 (+) False LOC122341338
TU32169 other downstream 595339 20106846 ~ 20107836 (+) False LOC122341546
TU32173 other downstream 674060 20185567 ~ 20187198 (+) False eftud2
TU32181 other downstream 676021 20187528 ~ 20188083 (+) False eftud2

Expression Profile