RNA id: XM_043229759.1


Basic Information

Item Value
RNA id XM_043229759.1
length 2685
RNA type mRNA
GC content 0.36
exon number 4
gene id pvalb5
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 26541968 ~ 26546505 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttatttattttttgcaacgtttgaatatttcatttttaatgaggaCCTCTGAAATTAGACCAAATATTTTtgcctgtttgttttgttttatcaatAGTATTTTAGTAATTGCTTTAGAAGGcttgtatttaattatgttttattctttatgcTTTTCACAGATGGcttcttttatttgattacgAATACAATAAGAAGCagtataatattgtgaaatacccCTATTAGTCTGttcaaatttcaaataactgttaTGTGGAttatatttattcctgtgatgcaccattacttcagtgtcacatcaaaaaatcattctaacatgccgATTTCCttctaaattattaattgtatttaattaccAATAAGGGCTCTAATTATTAGCAGCGTTCAAAATtcttgctgcttaatatttttgctgaacTCATAATACTTTTTTccgatttttattaattgtgaatAGATATTCATATagcagcatttattatataaaatatagtttttggtAACGTTAAATATCTTTACTGAGCAATTTTAATCTGTTCAATGCATTATTGAATagattcatttctttttttaaacaaaaacattctcaCAGCGTCCATAAATCccacaaaaacatacagcaccgttattcatttaataacagCTGAATCATAGCTGTTACTgatatgtgtgtaaaataaaaaatgaattaaatgtatactgtatcACCATGGAAACCCACTCCCCAATGCCTTTTCCCAGTGCTCCCCATACAGTACGCTCAACCTTATTAATATCATGTTTCATCAAAACAAacttcttttatcttttttccacaattttttttccctttatatttatatttatatactgttaaCCACTAGTGAGTAGAAATAActcaaatgcatttgaaatgcatttatctcatacaaacatttgcatgtttatgtaaGGCCGTGcaaaatgaaatcataaaaagtGCAGAAATCATACGGTTCTCATCAAAGGTGACAATTCATTGCAcattgtccaaataaagttattatatttttcatcacCAGTAAGTCTCAGCAGGTGATATTTGAGTAAATATGATaaacattactgaaataaatttgtaacatttaagtgtattttactAGGGATTGATTTTTAGTattaaatagttatattttatcataatacttaaaatattagcGGTTGAATCATAATAGGTGGccttaaataaattgaatttaaataaatcattaaataaaacgcacttattgtatatatgtatgtttttacattgcacttatattttttaaaaatacctagttacatctgtaattactTTCTGTAATCGCATtcctaatataatattttattggtgatattttatttaacctaAACTAACAATCAAGCTTCTATTAATGTTCATCTCATTTTCTCAACGCTTTCTGTTCGAGTTTACTGATGCGCTGTGATCTAACATAAACGCAATCATTTTtaccaaacataaaaaaatgaaaccgtTCATTGTCAGTCAAGTCCTCCTAAGtgctgctattttatttttcagcttatAGAAACATAAGACCTTTGATGAGGCGATTTCATTGTTGTATGCGATTTCCATTTTTCACTGTGATTCAAACCAGAAGAGTTTTCCTCCCCGGCAATCATCTGAGGTCTCAGCAGCGGGCTCAGTCCTTCATAAACATAATATGCAAAAACCGCATCCTTTCGAACCAATAGCTATCAGAAATGATCTGCTCGGATTAGCTAATGAGGAGGGAGGCGTTCTGTGGCCTCCTTGGGTTTAAGGGCACGGGTTTCACGCTCTCTCCGCACTTTGAGTCCCAGAACTGCAGGAGAGGGTCTCTTCGGTTTCTTCATCGTTCCTGAAGGTACACCTGAAGAGGAGCACGCATCCCTTCCACCTCACGTCCACCGGTGAGTCCTGAACACACACTGTACGGCTAGAATTAAAGTCTTTTATCGGAATGCATCGCGTCCCTGCGTTTTCCCCCCTCGAGTCTTAGCAGCATTCGTGTTAAAAAGTGGACGGAAAAGCTTGTAATTGCGATTTGTGTTCGCAGTACTCGTTTTTTGCGGAAAGATGGCACTTGCGGGACACCTGAAGCAGGATGACGTTGCTGCGGCTATCCAGGCTTGTCAAGCCCCGGGGACTTTCAACTACCAGGCGTTCTTTGAACAAGTGGGGCTGATAGGTAAAGCTGCTTCAGACGGGGAGAAGGTCTTCAAGGCCCTGGACCAGGACAAGAGCGGCTTCATAGAGAAAGAGGAGCTGAAACGCTTCCTCCAGAACTTCTGCTCGAAGGCCCGAGAGCTCACCGAGGCCGAGACCAACGCTCTCCTGGCAGCTGGGGACATCGATGGAGACGGCAAAATCGGCATGGAAGagttCTGCGACTTGCTGAAATGAAAACGTGATGAATGTCTCCACTGAACTTCATTTCATGTTTCTctcttatttatttgcatgcatttaccTGTGACGGCTTTTTACGCGAGTTGGTTATTAAAACATGTCTAGCAAGTCTTTGTAGTAAATGTGCAAATTGGGAACACATCAAAATCTGCTTCTGTAACTAGTGATTGTAGAATATATGAAACTgctcaataaaatgaaatcgcCTGATACAGGACTTCTTTTATGCAGCTTTGGCTCATGTGATCTTTTATACTTTTCAAGTGTCT

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35088 lncRNA upstream 44001 26492946 ~ 26497967 (+) True G23552
TU35079 lncRNA upstream 106120 26428219 ~ 26435848 (+) True G23550
TU35028 lncRNA upstream 350126 26179232 ~ 26191842 (+) False G23508
TU35027 lncRNA upstream 352043 26179232 ~ 26189925 (+) True G23508
TU34527 lncRNA upstream 408138 26131602 ~ 26133830 (+) True G23189
TU35137 lncRNA downstream 98766 26645271 ~ 26646452 (+) True G23594
TU35237 lncRNA downstream 176307 26722812 ~ 26723027 (+) True G23659
TU35242 lncRNA downstream 182303 26728808 ~ 26729365 (+) True G23664
TU35302 lncRNA downstream 252306 26798811 ~ 26801395 (+) True srsf2b
TU35307 lncRNA downstream 278603 26825108 ~ 26834654 (+) False G23692
XM_043225963.1 mRNA upstream 26422 26500010 ~ 26515546 (+) True tecpr1b
XM_043225971.1 mRNA upstream 26422 26500010 ~ 26515546 (+) False tecpr1b
XM_043225981.1 mRNA upstream 26422 26500011 ~ 26515546 (+) False tecpr1b
XM_043225991.1 mRNA upstream 26422 26500011 ~ 26515546 (+) False tecpr1b
XM_043226000.1 mRNA upstream 26422 26500011 ~ 26515546 (+) False tecpr1b
XM_043235322.1 mRNA downstream 1269 26547774 ~ 26551456 (+) True pvalb1
XM_043235324.1 mRNA downstream 6375 26552880 ~ 26554257 (+) True pvalb4
XM_043235325.1 mRNA downstream 8396 26554901 ~ 26559546 (+) True pvalb8
XM_043235326.1 mRNA downstream 10890 26557395 ~ 26559546 (+) False pvalb8
XM_043235545.1 mRNA downstream 21630 26568135 ~ 26572744 (+) True aimp2
TU34502 other upstream 632792 25907165 ~ 25909176 (+) False LOC122341383
TU34498 other upstream 635633 25894657 ~ 25906335 (+) False LOC122341383
TU34460 other upstream 691392 25839626 ~ 25850576 (+) False G23146
XR_006250491.1 other downstream 114735 26661240 ~ 26704452 (+) False pitpnc1a
TU35285 other downstream 212589 26759094 ~ 26772903 (+) False ubald2
TU35297 other downstream 252306 26798811 ~ 26801395 (+) False srsf2b
TU35298 other downstream 252306 26798811 ~ 26801395 (+) False srsf2b
TU35299 other downstream 252306 26798811 ~ 26801395 (+) False srsf2b

Expression Profile