RNA id: XM_043229772.1


Basic Information

Item Value
RNA id XM_043229772.1
length 2702
RNA type mRNA
GC content 0.39
exon number 13
gene id LOC122332454
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 22356954 ~ 22362402 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAATCGTTATTTCACCTGTGTTAGTTGGAGCAGCCTATGTTATCCGGTGGATTAAAGGGGTATTTGATGTCAGTTTTGCTGATGATAAAAGGCAATCTCCAAAAATGAACTACAGCCTTCTCTTTAAGTTATTTCTGACCGGGCTCTGTCTTACTGCACTGGGTGTTTATGTTATGCAAAGTGGATTTCTAGATGTCACAGATGCCGCTAGTCTCTTGCCATTAGGcacaaGGAATCTCCAATTTTTTGAGCAAAGACTATATAACCGCAACATTGAGGCATTTCTCAGGAAAAACCGTTCATGTTCCTGTGAAGGATACACTCTAAATGTTCAACATGTACCGGCCAATGAACAGGAAGACCTTCAGAGACGCCGGTCTGAGGAGTACCGTCAATACCAGCTCAGGATGGGGCCAAAAATGGAGTCACTTTTATTAGCCCAGTCCAACTCACCCCTCCAATATCCCATCCAGGGTTTCGTAGTGGCACCTCTTGCAAAAAGTGTGATACCAGGTTTGGCTCTGCAtgcacaaaaaagaagaaaatataagGTCTCCTTGAGCGTGAGTAAAGGAGTGCTCTCAGTGAAGGATCTTCTGGATGGAGATCAGGTGGAGGGACAGGGTCAGAGTAATCTGACCATCTCATCCAGCAACATCACACATCTCAATGATCTTCTGTCCAGAGTGACCTACACCAGCACCATCTACCACATCAGGACCAAAGATATGGTTAATTTTTCCTTTGACAACTACGAAGCCATATTTCCCATTGTGATCAAGAGACTGTCGCTTCCTGTCCTGTATGACCCAGGGACAGATATTAACTCACAGGTGACTATAACAACCAAGACCTTTCTGAGATATGACGAGCTAAACATCCTCATCAAGAGCATCCGACAGTTTTACCCCAAAATCAAGATCATTATTGCTGATGATAGTCTGGAGCCGCTAAACTTGACTGGCGACAACTTGGAGCACTACATTATGCCTCCTgcacaggGCTGGTTTGCAGGCAGGAATCTGGCTATTTCTCAGGTCACCACTAAATACTTCCTGTGGGTCGATGATGACTATATATTCAATAACGGTACGCGGATTGAAAGCTTTGTGGAGATAATGGAGAAAGTTCCAGAACTGGATGTGGTTGGTGGTGCAGTGGGACAAGATCAGTTCTTTTTCCGCCTTCAGTATGAGGAAGGGGATGAAGAGGAAGGTGGTTGTCTCAGGCGTTTGCATAGGAGGAAGCTCCAATTAGTCCCAGGCCTTGAAAGCTGCATTTTTGTAGACGGGGTCGTCAACTACTTCTTGGCGAGGACAGATGCGGTGCGACGCGTCGGCTTCGATCCGTTTTTGAAGAGGGTGGCTCATACTGAGTTTTTTATTGATGGTCTTGGAGATTTGCTGATTGCCTCTTGCAAAGGACTTTCAGTCGGCCATCAGAAGAAACGCAAACAAAGCAAATACAGGAGCTTTAGATTTCCAGGACAAAAAGATGGAAGAAACAAGCTGGCCCATCATTACTTcaagaatcatttaaaatgcatcagGTACTGAGAGACTTTTGAGGAGAAGGGTCTCTCACAGAGACCAAACTGAATAAAGGTTCACCTCAGACGTATTTTGGTAAAGAAAAGAATAGTGCAGTTAAGAAGTTAAGAATTCACTCAGGGGAATCGGCattaaaaaatggcaaaacctAATTTTGTGCCTTCAGGAGAAGAACTGATCTTAGAATgaatattttgctatatttatttacatcaaacaattatttattactgtagGTTACTGttatgagggaaaaaaaaaaaaaaaaaactaatatattacAGTGCTATAAATATGACTTATGTGCAATAAtggatgtatttgtttaaaaggtgaaaaaagaagaaaaggaaaaaaaaaacttgaattaaaatgtaccCTTAAATTGAGCTTGATATCTCTATTGAATTTCATAAGGGTTattcattttctaaaataaaatgtattttttggagGGTAACTTTTCTAAAGTTATAAAGGGTTTTTCTGTGCCTAAAATGAGTTAATCTTAATTATGTGGATGATTAACCATTGAGCATCAATTAAACATATTACACAGGTTTATAGAGAACAAGTTTGGGTCTCATTTTCAAGAAGACCCTTGGCATATTGTTaagttttaaatcaaaatgatgtttgtttgtttgtttgtttgtttgtttgggaaTTTCTGCTtctttaactttattaaaaaaaaaaacattaaaaaaacaattcttaaatGCTGAACAGGTTTGAGactgatttattaaatgtgGAATTCCTTGCGGTTGTTTCTAGATTCAAGAATGTCTAACACTGTGATAATGTTTAACCAGTGAGTAAACCCAATTTAGGTCTGCTGCCTGCTTCATAATTTAACAGTCAGCAAGACCTTCAAGCATCAATGCATCACCTTAAACTTTTTATATGACAGTTGGATCAAATACTTTTCTGAAAATGATGAAGtgcaaatataaaatctaattatagTGTAACATCTCGCATGTCAAAGATTTCTGTCATCAGGTTATGGTAATATTCTGCAACTGTTAAAGCTCAGACatctacactcttaaaaaattaagatgctcaaaaggttctttaaagcGACGCCAGAAGAACCAGTCAGTAAAAATTCTTTAGAGAatccttttttctttactttttta

Function

GO:

id name namespace
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33113 lncRNA upstream 20733 22288141 ~ 22336221 (+) False hdac5
TU33114 lncRNA upstream 69909 22269177 ~ 22287045 (+) False hdac5
XR_006250495.1 lncRNA upstream 267023 22035882 ~ 22089931 (+) True LOC122341843
TU33157 lncRNA downstream 149026 22511428 ~ 22640362 (+) True G22340
TU33156 lncRNA downstream 235616 22598018 ~ 22672911 (+) False G22340
TU33382 lncRNA downstream 361642 22724044 ~ 22725888 (+) False hoxb5a
TU33399 lncRNA downstream 403344 22765746 ~ 22766130 (+) False hoxb2a
TU33447 lncRNA downstream 536931 22899333 ~ 22903541 (+) False LOC122341356
XM_043231537.1 mRNA upstream 435 22349117 ~ 22356519 (+) True nags
XM_043231545.1 mRNA upstream 435 22349117 ~ 22356519 (+) False nags
XM_043235650.1 mRNA upstream 9187 22344662 ~ 22347767 (+) False si:ch211-237i5.4
XM_043235649.1 mRNA upstream 9187 22344870 ~ 22347767 (+) True si:ch211-237i5.4
XM_043233681.1 mRNA upstream 14418 22336995 ~ 22342536 (+) True lsm12a
XM_043231079.1 mRNA downstream 2874 22365276 ~ 22371672 (+) True LOC122333458
XM_043235455.1 mRNA downstream 11680 22374082 ~ 22382787 (+) True LOC122341813
XM_043235855.1 mRNA downstream 22329 22384731 ~ 22387485 (+) True gngt2a
XM_043235854.1 mRNA downstream 24441 22386843 ~ 22387485 (+) False gngt2a
XM_043234902.1 mRNA downstream 71971 22434373 ~ 22449649 (+) True col1a1a
XR_006248300.1 other upstream 331043 21976509 ~ 22025911 (+) False wnk4b
TU33098 other upstream 380289 21975252 ~ 21976665 (+) True G22301
XR_006248723.1 other upstream 622827 21637743 ~ 21734127 (+) False crhr1
TU32806 other upstream 942668 21295702 ~ 21414286 (+) True G22087
unassigned_transcript_291 other upstream 2042623 20314260 ~ 20314331 (+) True trnac-gca_3
TU33161 other downstream 166587 22528989 ~ 22530060 (+) True G22344
TU33136 other downstream 183756 22546158 ~ 22547208 (+) True G22329
TU33451 other downstream 542975 22905377 ~ 22906695 (+) False LOC122341356
TU33550 other downstream 795847 23158249 ~ 23163716 (+) False prr15la
XR_006250499.1 other downstream 1041039 23403441 ~ 23408814 (+) True LOC122341907

Expression Profile