RNA id: XM_043229938.1


Basic Information

Item Value
RNA id XM_043229938.1
length 3987
RNA type mRNA
GC content 0.41
exon number 8
gene id zmp:0000001048
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 9260905 ~ 9267730 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gttattatttgtgtgttgttgttgttggtatACAGACTCCAAATCCCAGGGTCCTCAGAACGCGACCTGTGCACGTGACTTGTTTCCACGGTGCCGCTCTCGCGCAGAACTCAGGCGCTCCGACTGAAAGGAGTTTATGGATGACAAGCGGTCTGTCAGCAGGACGCAGATTACATGTCATCCTTGATCTGAAGTTATGGGAACACGGAAGGTTTTGGTGACAGGATGCTCCTCTGGAATTGGTTTGGCACTGGCTGTCCGTCTTgcaaaagataaattaaaacGCTTCAAAGTTGTGGCCACTATGAGGGACCTGGATAAGAGAGAAGCTCTGGAGAGAGCAGCTGGAGAAAGCCTCAACAGATCCCTGGAGATCCGGCAGCTGGATGTCACCTGTGAGGACTCCATCAGAGAGTGTTTGAACAGCTTGCCAGATCGACGAGTGGGTGTGTTAGTGAATAATGCAGGTGTGGGTATGATTGGTCCTTTGGAGTGTCAGAATGTAAGTGCTATGCAGGAACTCTTCAACACTAATTTCTTTGTGCTGGTGAGACTGGTAAAAGAACTGCTCCCTGACATGAAGCGCCGTCAGAGCGGACACATCGTAGTGATGAGCAGTGTCCTGGGCATCCAGGgatTTCTTTTCAATGATGTATATGCTGCCTCTAAATTTGCTGTAGAGGGTTTTTGTGAGAGTCTTGCTGTGCAAGCTATGAAGTTCAATGTCAAGATGACATTAGTGGAGCCAGGCCCAGTTGTAACTGAGTTTCAGAAGAAAAGGTATGAAGAGGCAGAGAAGATGGATCTCTCGGAGACTGTCTTCCATCAGATTTACCTGCCATATTCACATAAAATTTTCAACTCAGTTGGGCAGACACCCGAAGAAGTGGCTGAGCAAACTCTCCAGCTGATTGTGTCCAAAAAACCCCCATTTCGTCATCAGACCAATCGTTTGTACATGCCACTGACTGCCATGAAGCATGCTGACCCAACGGGGCGACTGCCCATAGACGCATTCTACAAAATGATCTTCCAGCATGACCGCATGTTCAGTGCTACTCTGAGTATTCTACGCATACTTCACAGGGGAACAGGTGCTGCCTAAAAAGctctgaggtaaaaaaaaaaaaaaaaaaaaacatttcaaaagcatttcaGAGTTTTAAAGCCCCAAAATAGGTCGTGCTCattgaatatgaaaatatggcCAAACCACAGATAGCAAAAAAAATTCACTACTTGATCACTACCTATCATGAGCAAATACATAATGTTTAGTTGCAAACTGCAGTGTGTAATACTCTAgtgtctttttcattttgtaatggtttttcAACAGTCAAGGGGTAACTTACTTGCTCGTGTTTGCCCTGGAGCACATGTACAAGAGACTGAAGACCATTCAGTGCCCGATAAAGTCATGACGTTTTGTTCTTGCTTTGAAGAAGTAAAAGAATATTGGAAATAAATTGACATCTAGATGCTGTTCTACTTCACACTACCGTGAGGTTTAGGTTAGATAAATACGTAAATATGTTCTGTGCTGATAATACAGTTTATCCAGTATAAACAGCAGCTGCCACAAACATGCCACATGCTGCGATttgcactttctctctcttctgagGTGACAAAGCAGAAGCTAAGAAAGTATCCGATCATTgccatgtaaatatatttggaCCAGTTATGCAGTTCACCGACATACTATTATGATCTACAGTAAGTCAACATTTGTAGTGGATCAATAATCAAAATTGCCctaagacaagaacacatttttgttttaggaCTATTTTGATAAAAGGTTTTGATCTACTTCAACTGTTGACTAGTTTAAGTATATTTGAGATACTGACCATTGAGACTATttgaaaaatttacatttttttggcgtAGAACATTTACGTTTTAGTGAATTTAACCCTGACAGGTTTGTCAACCAATCACAAACACCTTTATCCACAATCCTACTAAATGCTGGACTCGGAATGCATGGaaatataaaagacaaataataaGACATTAGTGAAATGTAGTTTCTACCGCTTTATTAGAAGTAACATATTTTACAACTTTGTCTGTAGAAAGAAACtgtgaaaaactgtttatatacaatgattttaaactacttttaaacaaGTATAGGAAATTAATAATGACAATAGAAAATATCTATGGCTGTTCTAGTTATGCAAGACCAATACACAGTCACATCCTCACCTTAATAATGCTAATACAAAgtacatttactttttgttctttttagtacatattcattttttagaAACATAAGACTTCTCATAAACAAGTAGACCTAAACAaggtgaaatatatttacaaaaaggtactgaaatttcaaaaatatctgGAGAACTGTATCAAGAGAGCTGAAAAGTTCTGAATGAAAGGAAGACTTAGCTGGGTTAGCGAAGCTTAGTAGTACTTATGTAGGAAAACAAAGAGGTCCAGAATGTGCTCCAAAACCTCCACAAGCCTTGAAATGTGGTACATGAAGATTTTACAGTTTCATAGATGCACACTCGGTATTAAGCACGAAtactatttgaaaataataatgcatggcTTTATGTGCCATAATTCAGTGAAATGGATTTATTCCTCTTGGTGATAGCAAGAAAACAGCTGTCAGTGTCATCAAATGCAGGTCTTACAGTTGGGCAAATTGAAACGAGATGAACATATGGACATGTTACAGAAAGCCAGGGGCATCACTACATGGTAGCGTTTCCCATCTCACGCCTTCTGACCAGACACGACAGATGTCATCGTCTAGGCTGATAGGGTGGGAACTGCTAAAGATGCAGACAACGCTGCATGCTATATAACACCTCCCTGAGGAGTGACAGAGCAATAGCAGACCATTAGAACCCAGTTAGCCACGTACCCAACTCACAACACATATGCTTACTATCCAAACCAAAAGGAGCTGGAATATGATTAGACCACATGGAAATGCTGGACCTGAGGGATCAAATTACATTAAACTAAATCAACCACGCTGCCTTGGCTTCGTAAAGCCCCAGAGGAAGACTTTCTAGTGGTCAAGTGTCAGCTGCAGCTGTTCAGTATTGAAATGAAGTGCTTGTGAGGGCTCGGGAACATGGCGAGATCAGTTTTGCAGTGGTCAGTGGCTCCACGAGCGTGGGTTGGTGGGTACTGATCAGGGAATGTTAGAGGAAAAGGAAGTTGGCTGTCACCGAAGAAGTGACGCAGAGCAGCAGCCTAATAACACAGCTTAATACATCAGTGTTCCACAGGTAACTGTGGATCCAAAAATGTGGttataaaaagacagaaaacaaattTACACAAGGCAAGACTATAAGGCAGTGACTGGCTGGGATTTTGAGAGGGAACGTGTAGAGCCTTGGCCAGCTCTGGCCAGTGTAAGTCGGTGAGGTCACTTAAGAAACTATGTTCAGTAAAATAATTTCCACTGATACAACGCTGAAAACATTCTAAACACTGGCCTGTTTTAGAGAGGCGCTTTTATGCACTGTTGTTATAAATTCTGCATTATGATTTCAGGGTTTTCTTAccgcatttctctctctctcaagctTTTCCCCTCGAAGTGCTTCACAGATGCCCCTCTACATTCATACAAATACTTttacaaaacatataaaataattttaaatcagaatattTCACTTGTATTGGTCTCTATATACCTCTGTTTTCATGTGCCAATCTGTTTCTGAAAGCTAGACTAAATAAATATCcctaaaatttgtaaaaattctaatctcattatgtgtgtgtgcgtgtcacTTAAAAGCCCGGGTGTGTATGTTCTGACTGGATCAAATGCTGCTGATGAAACTGGGGCGGAACAGGCTAACTAAGCAATCATGAGTTGCTCCTCTTGTAACAGTAGTGACATGGAACCTGAGGAGACCTCACGAGTCCCAGGTAATATATTGGGAATAGTAAGGCAGTTGTTATGGGGGTCGCTAAAAa

Function

GO:

id name namespace
GO:0006703 estrogen biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004303 estradiol 17-beta-dehydrogenase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27353 lncRNA upstream 10275 9250099 ~ 9250630 (+) True G18303
TU27326 lncRNA upstream 75324 9184399 ~ 9185581 (+) True LOC122341719
TU27339 lncRNA upstream 77629 9182540 ~ 9183276 (+) False brd4
TU27303 lncRNA upstream 248727 9011693 ~ 9012178 (+) False pgls
TU27283 lncRNA upstream 272295 8987053 ~ 8988610 (+) False LOC122341292
TU27527 lncRNA downstream 145914 9413644 ~ 9414007 (+) True G18425
TU27532 lncRNA downstream 216705 9484435 ~ 9484736 (+) True G18429
TU27551 lncRNA downstream 273970 9541700 ~ 9543366 (+) True G18443
TU27562 lncRNA downstream 302308 9570038 ~ 9570283 (+) True G18453
TU27563 lncRNA downstream 303424 9571154 ~ 9571734 (+) True G18454
XM_043235689.1 mRNA upstream 15248 9214244 ~ 9245657 (+) True camsap3
XM_043235690.1 mRNA upstream 15248 9214244 ~ 9245657 (+) False camsap3
XM_043235692.1 mRNA upstream 15248 9214244 ~ 9245657 (+) False camsap3
XM_043235694.1 mRNA upstream 15248 9214244 ~ 9245657 (+) False camsap3
XM_043235695.1 mRNA upstream 15248 9214244 ~ 9245657 (+) False camsap3
XM_043235655.1 mRNA downstream 85968 9353698 ~ 9400810 (+) True col5a3a
XM_043235656.1 mRNA downstream 85968 9353698 ~ 9400810 (+) False col5a3a
XM_043235676.1 mRNA downstream 161134 9428864 ~ 9487188 (+) False olfm2a
XM_043235675.1 mRNA downstream 194659 9462389 ~ 9487188 (+) True olfm2a
XM_043235555.1 mRNA downstream 309995 9577725 ~ 9582385 (+) True ppan
TU27323 other upstream 75245 9184528 ~ 9185660 (+) False LOC122341719
TU27325 other upstream 75324 9184528 ~ 9185581 (+) False LOC122341719
TU26907 other upstream 697529 8260084 ~ 8563376 (+) False LOC122342110
TU27599 other downstream 426902 9694632 ~ 9696559 (+) False aanat2
TU27611 other downstream 472066 9739796 ~ 9749880 (+) True G18491
TU27625 other downstream 531085 9798815 ~ 9799755 (+) True hbbe1.3
TU27725 other downstream 758088 10025818 ~ 10034467 (+) True G18574
TU28036 other downstream 1485029 10752759 ~ 10781853 (+) False kcna7

Expression Profile