RNA id: XM_043229957.1


Basic Information

Item Value
RNA id XM_043229957.1
length 2404
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC122332610
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1035252 ~ 1045858 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGATTAGTTTCACTGCGAGGTCTGTGTTGTTTTGTCGGGATGCTGGTTTAACAAAAACGGCTAGAAATGTCTCTCCTGTAAATAAAGAAGTATAGTTTTTGGACCAGGACggtaaaattgtaatattttcgTCCTCGTAGTTTTGAAGCAAGCAGAAATATCTGGAGTAGTATCATCTGAACTGAGATCTGCTGCTGTGAAGATGATGTTtcttaaagaggagagtgaggaGAACATGATTGAACCAAAaacatggagaataaaacaagaagaacCAGAAACACTGAAGATAAAACACGAGGAACCAGAaacatggagaataaaacagGAGGAACAAGAAGgccTGATGAAAATCAAAGAAGAAAGACAAGATGTGCATGAAGTGGAGGAGAAATATCGGGATCAGAGAGAACGTGAGGTCGATGGAGAAACGTCAGTGAATTGCAGCATTCAAAAAACTGAGGTCAAAaggcctttcagctgctctcagtgtgggaAGTGTTTTACGCAGAAAGTGAGCCTTGAGAATCACATGTTAATTCACGCTGGAATAAAGCCTTTgagctgctctcagtgcggaagGCGTTTTAGACAGAAATCAAGTCTTGATAAtcacatgttaattcatgcTGGAAAGAAgtctttcagctgctctcagtgcggaaagagcttcACGCATAAATCAAACCATCAGAGGCACATGTTGATTCATGCTGGGAAAAAGCCTTTTTtctgctctcagtgcggaaagaCGTTTAGAGACAAATCAAACCTTAAGAACCACATGTTAATTCACGCCGGGATAAAGTCTTTCAGCTGCTCTGAGTGCGGAAAGACTTTCACTCAGAAAGGACAACTTAACAATCATCTGGTAACGCACTCTTCAGAAAAGCCTTTCCGCTGCtctcagtgcgggaagagtttcacgCAGAAATCCAACCTTCAGAGGCACATGTTACTTCACCAAGCAGTTCCTGAAGGAGTATCATCTGAGCTGAGATCTACTGAGATGGTGTTGGTCAAAGAGGAGAGTAAGGAGAACACGAGTGAACCAGAAGAGTGGAGAATCAAACAGGAGGAACCAGAAACCTGGACGATAAAACAGGAGGAACCAGAGCCCTGGAGAATAAAAGACGAGGAACCAGAAACCTGGAGAATAAAAGACGAGGAACCAGAAACCTGGAGAATAAAAGACGAGGAACCAGAAACCTGGAGAATAAAAGACGAGGAACCAGAAACCTGGAGAATAAAAGACGAGGAACAAGGAGGAAAAAATCATGTGAAAGGTGACGAAATCCCCAAACGGagagatttaaagaaaaaaagagccaAAACATCTTTCACCTGCACTCGGTGTGGAAAAAGTTTCACATGGAAACACAGTCTTGAGCTTCACATGAgggttcacaccggagagaaactgTTCACTTGTGaccagtgcgggaagagcttcacaCAGTCCTCAAGCCTCAAGAAACACAAGAacattcacaccggagagaaaccgtactCCTGTAATCaatgtgggaagagtttcacacAAAAAGGACACCTTACGGCACATACaagagttcacaccggagagaaaccatacacttgtgatcagtgcgggaagagcttctcGCAGTCGGCAAACCTTAAGGATCACATGATCATTCACACTGGCGGGGATCGGCACGCGTGCGATCAGTGCGGAAAAACGTTTATGTGGGCTGCGGTCCTGAGGAAACACCTGAACATTCATAGAAAGGAGAAGCAGCATCCATGTCATCTGTGCGGAAAGAGTTTTTCATGTATAGACCATTTGAAAGCACACCAGAAGATACATGCTGGTCTGAGAGAGTACATGTGCATTGAGTGCAAAAAGACTTTTACTTTAGCTCAGCATTTGAAACGGCAccagaggatccacaccggagagaaaccttacaAGTGCTCACGCTGCGACAAGAGGTTCATCCAGTCacatcatctgaaaacacacgagatgatccacaccggagagaaaccgtacgAGTGCTCATGCTGTGACAAGAGGTTCAGACGGCCGGGAAACCTGCAAAGACATGAGAGAattcacactggagaaaaaTCCCagtTTCCCGAAGAAAGCGAGGAGAACAAAAAAATGAGTGACGCTGAGGAGAAAAAACGTGTCAGAACTGGAGAAAAACCTCGGAGCTGCTCTCAAACCAAACAGAAAGCCTAAAGAAGGCAGGAAGACTTTCACCTGCCCTCattgtggaaagagtttctTATACAAAACTAAGTTTGACGTTCACTTGAGAGTTACTGGAGAGAGACCGTTCACTTCCGATCAGTGCGGGAATGGTTTCAAACGCTTATCAAACCTCAAGGCACACATGAgcatccacaccggagagaaacaaCACGCATGCcatca

Function

GO:

id name namespace
GO:0000439 transcription factor TFIIH core complex cellular_component

KEGG:

id description
ko03420 Nucleotide excision repair

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23489 lncRNA upstream 75158 959579 ~ 960094 (+) True G15806
TU23486 lncRNA upstream 79448 955507 ~ 955804 (+) True G15803
XR_006248077.1 lncRNA upstream 144346 875671 ~ 890906 (+) False LOC122330733
TU23542 lncRNA downstream 23831 1069689 ~ 1070138 (+) True G15833
TU23543 lncRNA downstream 23831 1069689 ~ 1070138 (+) False G15833
TU23616 lncRNA downstream 69537 1115395 ~ 1115671 (+) True G15882
TU23617 lncRNA downstream 71365 1117223 ~ 1117666 (+) True G15883
TU23621 lncRNA downstream 74782 1120640 ~ 1133792 (+) True G15886
XM_043229905.1 mRNA upstream 15900 1017707 ~ 1019352 (+) True LOC122332569
XM_043227127.1 mRNA upstream 21609 1011311 ~ 1013643 (+) True LOC122330251
XM_043226983.1 mRNA upstream 25821 1005983 ~ 1009431 (+) True LOC122330135
XM_043226920.1 mRNA upstream 188807 844603 ~ 846445 (+) True LOC122330100
XM_043229640.1 mRNA upstream 242584 783410 ~ 792668 (+) True LOC122332312
XM_043226875.1 mRNA downstream 1154 1047012 ~ 1051151 (+) True LOC122330066
XM_043227149.1 mRNA downstream 16418 1062276 ~ 1064324 (+) True LOC122330262
XM_043226788.1 mRNA downstream 33075 1078933 ~ 1084889 (+) True LOC122330011
XM_043226794.1 mRNA downstream 33926 1079784 ~ 1084889 (+) False LOC122330011
XM_043226802.1 mRNA downstream 33957 1079815 ~ 1084889 (+) False LOC122330011
TU23504 other upstream 25949 1005995 ~ 1009303 (+) False LOC122330135
XR_006248020.1 other upstream 266280 754431 ~ 768972 (+) False LOC122330463
TU23155 other upstream 399643 625365 ~ 635609 (+) False LOC122330407
TU23138 other upstream 478171 553698 ~ 557081 (+) True G15563
TU22959 other upstream 735931 297895 ~ 299321 (+) False LOC122330774
TU23529 other downstream 2145 1048003 ~ 1049260 (+) False LOC122330066
TU23688 other downstream 245111 1290969 ~ 1291564 (+) True G15939
TU23709 other downstream 344881 1390739 ~ 1392850 (+) True G15955
XR_006247969.1 other downstream 349989 1395847 ~ 1402168 (+) False LOC122330032
TU23776 other downstream 513529 1559387 ~ 1649494 (+) False G16003

Expression Profile