RNA id: XM_043230135.1


Basic Information

Item Value
RNA id XM_043230135.1
length 2242
RNA type mRNA
GC content 0.52
exon number 4
gene id LOC122332748
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 17381783 ~ 17384185 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCGCACCAAAACATGTCTCACACAGCAGACAACGTTGGTCACTGGGAAGACCTGGAAACATGGCTAAGTGTTGCAACCAGCAGCCTCCTACCCAAGGCCGCGGAAACACTAAAGCGTCAGACCCAGGAACAGCTGGATAACAACCTAACGAGCCTAATGGAACAGGACCCAAGCCAAGGCTACAACCACAAAGAGCTAGCAAAGATCACCTGCTCCCTAAGTCACACCCTCATCGCTACCCTCAAACTGAGTGACAGGCACGCCGCCGATCTCCAACAGGAGCTGACATGCGCACAGCGACGCATCAAACAGCTGGAACTGGAGGCTCAGGAACTACAGGAAAAGCTGGATGAGGAGAGAAAGGACCCAGAGGAGATTACCACGCTCAAAGCCTTGCTAGCAGCTTCCACACAAGaggtgaaacaaaccaaaagagacTTTGACAATGCTGCCAACAACCTCCAGTACGCAGAACAGCTACTGGAGAAGGCAAAGACTGACCTTAGAGACAAGGCCGGCAGAATCAAAGCCCTCGAAACTCACTTGAACGAGTCAAGGAATGAGGTCAACCGCCTAGAACAACAGCTGGACTACGTCAAAGAGGAATCTGACTGTGTCAAGGAGGAACTCAGACACGCCTACGACCTGCGCGCTGAGCCACCGAGGACACGAGAGGCACCAACGTCACCCCTGCCAACCAGCCAAAGAGCATCACACGGCCTGGACCTAAAAGATCTCGACAAGATCGCCAGGAACATCGTCAAGTTCACCCCAGGTGTGCCAAGTAGTCCAGACATTCAAACCTATCTACAGGACGTCGAATTCCATCTGGAAGTAAGACCTCACGTCACTGATAAAGATAGACTCTATTTACTGCGAGCAACATCCAGCCCTGATGTACGCAGCTTCCTGGCGCAACCAGCCCAGACAAAGGCTGATTACCACCTGCTCCGAGAGGCTCTCATCAATGAATTTGATGACCCAGAGTCAGAACAAGGACTAGTAGCCGCCCTGGAGATCAGACAAGGCCGTCATGAGTCTCCGCAAGCCTACTACAGCCGACTCAGGAGAGCATACTTCGGAACTCGCAACGAGCCCGAAATGGAACAGGACATGAACTTTAAGACTCTCTTCCTCAGGAACCTACATCCTGGGGTAAGCCACCATCTAGGCGTGCTTGCATGTTCGCGCACAATGACCATTCAGCAGCTGCGCGACTTGGCACACAAAGCCTACAGCAAACAAAAGATGGCTGCAGAGAAAGGCACTAAAGCTCCGACAGTCCTCGACTTCAACACACAAAGTCACGGACTGCCTCTAGAGGGTGCCCAACATCAAGACAGCTTCAAGCCGTCAAGAAAAGAGTGGAACGTGTCCAACCGAGAGCAAGACTTCCACGCAGGTACCAGACCCAATCAGAGAAACGGCCGCTGGGATGGACCACGTGAACGACAGCGCCGCGCCTGGACGCCACTGGGAAAATGGGAGAGATCGTGGAATCAGTCAACCTCCTTTAGAAACCAAAGGGGGAAGAGCTCCTGGGATGGCAACGGAACCTCCATGggtagagcacaaacacaccctgGAGCAACCAGCCCAAGGACTCGACGAAAGAACTTTCAAACTGAATCCACACAAGAGCAAAAGACATCACCGTTTTTTTACTCACAAGAACTGATGAAGAGCATGATGAGAGAGTTTTTCCAGCAAATGAAGGAAGATTGGAagtgggaaaagaaagagaagccgGATTCAGCCTGACTGGCAGCCGGACGAGACAGCAGCGACCACCCGACCCAACCAGACACAGAGAATAGCACTTCCTCCCCGCACACTCAAAGAACCATAATGACCATAACTTCAGATGGACGAGAAATCCTACCTGAAACCCCAGCAATCGAGTTAGCCCCTAACTCACCATATGATGCTTCAAACCACGGCATCATCCAACAAACACCTGCCGCTGAAACCACTCTGGTTCCTGAAAGTGCTGTCCTGGTCGTCTGCCACTCGTCCGAAGAACTGCAGATTAGCCCTGATATCCTCCCCATCTCATCCCAAACTCCAGTCCCTCAACTCCTGGGTGATCTCATTGAGAGAGGTATAGCAAGAAAGTTTTACCTCTCCGTCATCATCGAACGCCACATCAGGGTCGAAGCCCTTCTGGACACAGGAGCTGACATCACACTAATGTCAGCAGAACTCCTCGGAAAAATCCAGGAAGgagcaaagacattaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30906 lncRNA upstream 273089 17107992 ~ 17108694 (+) True G20803
TU30937 lncRNA upstream 305609 17075788 ~ 17076174 (+) True G20831
TU30936 lncRNA upstream 306208 17075353 ~ 17075575 (+) True G20830
TU30935 lncRNA upstream 306959 17074622 ~ 17074824 (+) True G20829
TU30904 lncRNA upstream 318960 17057704 ~ 17062823 (+) True G20801
TU31064 lncRNA downstream 119711 17503896 ~ 17516429 (+) True G20908
TU31072 lncRNA downstream 169189 17553374 ~ 17563364 (+) True G20915
TU31095 lncRNA downstream 187945 17572130 ~ 17572473 (+) True G20927
TU31137 lncRNA downstream 266582 17650767 ~ 17651301 (+) True G20953
TU31133 lncRNA downstream 305230 17689415 ~ 17690288 (+) True G20951
XM_043234677.1 mRNA upstream 181153 17137930 ~ 17200630 (+) True LOC122341316
XM_043235913.1 mRNA upstream 265464 17113048 ~ 17116319 (+) False nsmce1
XM_043235912.1 mRNA upstream 265464 17113152 ~ 17116319 (+) True nsmce1
XM_043235519.1 mRNA upstream 283818 17089814 ~ 17097965 (+) True LOC122341850
XM_043230820.1 mRNA downstream 39103 17423288 ~ 17449492 (+) True hs3st2
XM_043235997.1 mRNA downstream 182078 17566263 ~ 17570451 (+) True ube2ia
XM_043225571.1 mRNA downstream 194555 17578740 ~ 17622221 (+) True baiap3
XM_043234016.1 mRNA downstream 274249 17658434 ~ 17668692 (+) True gpr146
XM_043234017.1 mRNA downstream 274249 17658434 ~ 17668692 (+) False gpr146
TU31020 other upstream 185899 17163701 ~ 17195884 (+) False LOC122341316
XR_006250523.1 other upstream 264742 17113152 ~ 17117041 (+) False nsmce1
unassigned_transcript_287 other upstream 375798 17005914 ~ 17005985 (+) True trnat-cgu_1
TU30773 other upstream 682301 16690703 ~ 16699482 (+) True LOC122331507
TU31132 other downstream 334997 17719182 ~ 17723423 (+) True G20950
TU31207 other downstream 520419 17904604 ~ 17906643 (+) True polr3k
TU31290 other downstream 690212 18074397 ~ 18075574 (+) False LOC122341796
TU31277 other downstream 713460 18097645 ~ 18101932 (+) True si:ch211-157c3.4
XR_006250035.1 other downstream 1021781 18405966 ~ 18425076 (+) True nubp1

Expression Profile