RNA id: XM_043230295.1


Basic Information

Item Value
RNA id XM_043230295.1
length 3697
RNA type mRNA
GC content 0.45
exon number 2
gene id hoxb4a
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 22735939 ~ 22740671 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGACAAAGGTGTGTGCTTCGACCCGTCCGGTGCTTATCTGAGAGACGAAGAGCTCGAGTTGGCCAGGAAAATTCCATTTTCCCATCTGTGCTCGTGTGTTTAAGTTTCTACGCATGGGATAAACGTACAAGAAAAACTCCAGTGTTTACCACAAACCATTAGCAAAGTTTATAAAGGAAGCGCCGATCCATTAAGTGGCGAGACAGATTGCTGATATCCTTGGAGGCAGACCGTTCCAGGTGCAACACTTGACACTGGGAAGGCACTGTCAAGGTGAGCAGGCTCTCTCAATGCCTGTCAAGAAGATACCTGTCATCTATATATACCCTGTAGATCCGGATTTGTGTAAACAGACGCACAGTCACAAATTCGTATCTAGGGGAGTATGTAGTTGATGTATAGGCTACATTTCGACTTCATCGGGCAAAGAAGATGACAAAATAACTTTCGGGTTGTTTATTAGTGACTCTCTGGTAGCGGGGTATCGTAGCAGGAACGAAAGTTTccttatttctttgtttttttccccctgtaaATCGCGGCGTGGAACGTCAGCGCGCTCGTGATGTCACGCGCATTGCGGGAGACTTTTATAGAATtcgaaaaaaaagaattctttaaaaagaattcGAAACGATGGCGGGGGAAAAAAACGATTAATGCTCGTCTGAATGCGATGGCTTTCAAACATCATCATGAGTAAACAGCTCGAATTTTCTTCTGGTGTTAATAGTGAGTGGAGCACATCTATTACTATTCAGTGTGTGTAGATCGGGCATACAGGATAAACGCGCTGTTCGGAGCCCAATGACTGCAGACTCCCTTTAAATGCAGAAGGTCTCCTTTGTGATTTAGGAGGCTTTGTAACCTGAATTAGTTGATGAATTTTCTATCGATCTTAAACAAGCCCAGATTCATCTCTGACACGCCGCTCACGCCACGACCATTCTCTCGCCGTTATTAGCGAGCGCATTTAAGAGCTCGGCCGAGGCGAGCTTCTTGCATCACTTTCCCCTGGTACCGCTTTTCGTGAACACCGGCCAAAAAAATTAAGCAGGATTTCTGCTCGCCAGATCTGAAACAGCTCTTTACAGAGGTGCAGTCATGTTCTCAACGCGCGGATGAACCGAGAGGGACCGGGGGCGTGACTTTCTGCGGGGCCGCTGGAATCCGGCGTGCCTTTTTGCGCGGCGTCTGCTCTCGcttgttattgttttgattCACCCAGCGTCTCATCGAGCGCGTAGCTGCGTGCGAGAAACTATGGGATTTTGGACTGTTCCGAAATGCGAGTTGACGAGCGCGGTCTAAACTGGCTAATCCCATTTCCTTATCCGGGAATCGCGAAGATCCACGCCATTGGCTGGCGATGTCACATGGACCCTTAACTTTGTTCACTTGACAGAAAGTAGGAGGGTTCTACGAAACAGGAAAACGAGTAAAGGGATACATATaaattttagtatattttgtGTGCAATTCAAAGAAATTAATGGCCATGAGTTCCTATTTGATCAACTCCAACTATGTGGACCCCAAGTTTCCACCCTGCGAGGAATATTCCCAGAGCGACTACCTACCCAGTCACTCTCCGGACTACTACAGCGCCCAGAGGCAAGACCCCTCGTTTCAGCATGAGTCGATCTACCACCAGCGGTCGGGCTGCGCCGACCCACCCTACTCATCGTGCCAGGGTCCGGGGCAGCCCGCCGCGGTCATCTCTCCGCGGGGTCACGTTCTACCCACAACCGCGCTCTCGACCCCCGTCCCCGAACCAAGCCATCACTGCGACTCGGTAACTCCGAGCCCTCCGCCCGCCTGCGGTCAGACTCCCACTAGCCAAAACACTTCAACGGTCACTTCAAGGAAAGATCCCGTGGTGTACCCTTGGATGAAAAAAGTCCACGTAAACATCGTGAGCCCGAACTACTCAGGGGGTGAACCCAAGCGCTCACGCACAGCCTACACGCGGCAGCAAGTCTTGGAATTGGAGAAAGAGTTCCATTACAACCGCTATCTGACTCGCAGACGGAGGGTGGAGATCGCCCATACATTATGCCTATCCGAACGACAGATTAAGATTTGGTTTCAGAACCGGCGCATGAAGTGGAAGAAGGACCATAAGCTTCCCAACACCAAAATACGCAGCGGCTCCGCCAACACCAATTCGAGCAGCGGCCCGACGCTGGGAAGCAGTCAGAACCGAGCGAGCGGACCTCCGCCGAGCCTATAGCCCTATATATACACTGTTGCCCAAAACACGTACaattataaaatctaattttctgGAGCGTACAACGTGGATTTTACCCGCGTCGTGTCTCCCAACTCTCCCCTGCGCTCTAATTACAGGGATAAAACACGAGGAAGATGTGGAGGAAAGAAAGCGTTCATCTTTTTAACACTAAAATGGGTGAAGACTCGAACTCGAAATGCTACTACAGAAGGGTCGCCTTCCCAGTCTGGTtcccattttttcttttttctcccccCCCCCCCGCACGCCTCTCCTGCTCACTCGCCCCTTCCCTAAGCACAGAAGGCGGCAGATAGTTTTCAGATTTGGTGAAGATGGATCCGCGTTTCATCTTTAATCACGCCAAACTCGGCCCCATTTGTCATGTTTACTCTGTGGTACAAAGGATGAACCGTAGGCCTGCCCATTACCTCGACGTCTAGCGTTGTGCTTAATAAATGAGTCGCTCTGTTTCGTCAAGAAGCCTTTTCTAACTCCCTTTATTCCGccggctttaaaaaaaaaaaaaaaaactagccgAGTGTTTTTCAACTGATATgaagttttgtattttgtagcAATTAggttattttgcatttgctatTTGCATTTCGAACGCGACGCCGGTGGGACTGACGGGTTTATGGCGCGTGTGGTCCATTCGGCGCGTGTTAAAAACGCAGGGACTCGTTTCACTCGCCTGTTTAGCGCATTTCAGTTCAAGAACAGCAAATTACTAATTAGCtggtattaaatataatataaaagttcaATGAAGCTGGACGGCTAGATATGCATAACCAAAACCGGTACAACGCAAAGCATTTTAATGAGAGCACTGCTAAGTACTATTTGAATTACCTcaattgtatttcttttttttttttgtttgtttgttttttctttttgtctagtTTTATGAAGTGATAACTTTTAAGTTCTTCGGACTTAATGGCGAATATCTGCAATAGCTAATCTCAGCATTTGTAAGTTGAAATGAAATTTAAGTTAAATGTGGCCAGGGTGTATAGAGAAAGGTGCGTATattgcatgaataaatacactatattttcgtttattctttattatgtCACTACCACCCTCGTTTTGTTTTATGGTACATAGATATGTGCACATACcacgtttctttctttctctctctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttcttcctttcttaattttattcatgttattttattattataattatattattattattattattattattattattattaatacattccAAAGATCAGTTTCCTCGCTGATGAATTGTAAATTTATCCTCTtacatgtttgtattttgtCTTCTTTCTGCTTGTACCTTTCACTGTTTACCTTTGTTACATGTAAATAGCTCTAGAAATTTAATAAATGGCGGAAAAGTATAATCTTT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09304 HOX_4; homeobox protein HoxA/B/C/D4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33382 lncRNA upstream 10051 22724044 ~ 22725888 (+) False hoxb5a
TU33156 lncRNA upstream 63028 22598018 ~ 22672911 (+) False G22340
TU33157 lncRNA upstream 95577 22511428 ~ 22640362 (+) True G22340
TU33113 lncRNA upstream 399718 22288141 ~ 22336221 (+) False hdac5
TU33114 lncRNA upstream 448894 22269177 ~ 22287045 (+) False hdac5
TU33399 lncRNA downstream 25075 22765746 ~ 22766130 (+) False hoxb2a
TU33447 lncRNA downstream 158662 22899333 ~ 22903541 (+) False LOC122341356
TU33448 lncRNA downstream 158662 22899333 ~ 22901102 (+) False LOC122341356
TU33452 lncRNA downstream 165071 22905742 ~ 22906695 (+) False LOC122341356
TU33443 lncRNA downstream 199576 22940247 ~ 23028505 (+) True G22554
XM_043230282.1 mRNA upstream 9781 22722022 ~ 22726158 (+) True hoxb5a
XM_043230303.1 mRNA upstream 14360 22719460 ~ 22721579 (+) True hoxb6a
XM_043225706.1 mRNA upstream 23882 22707994 ~ 22712057 (+) True hoxb7a
XM_043228340.1 mRNA upstream 29202 22703924 ~ 22706737 (+) True hoxb8a
XM_043228350.1 mRNA upstream 29202 22703945 ~ 22706737 (+) False hoxb8a
XM_043230242.1 mRNA downstream 6428 22747099 ~ 22765536 (+) False hoxb3a
XM_043230245.1 mRNA downstream 6539 22747210 ~ 22765536 (+) False hoxb3a
XM_043230216.1 mRNA downstream 9319 22749990 ~ 22765536 (+) True hoxb3a
XM_043230225.1 mRNA downstream 12671 22753342 ~ 22765536 (+) False hoxb3a
XM_043230193.1 mRNA downstream 13713 22754384 ~ 22765536 (+) False hoxb3a
TU33136 other upstream 188731 22546158 ~ 22547208 (+) True G22329
TU33161 other upstream 205879 22528989 ~ 22530060 (+) True G22344
XR_006248300.1 other upstream 710028 21976509 ~ 22025911 (+) False wnk4b
TU33098 other upstream 759274 21975252 ~ 21976665 (+) True G22301
XR_006248723.1 other upstream 1001812 21637743 ~ 21734127 (+) False crhr1
TU33451 other downstream 164706 22905377 ~ 22906695 (+) False LOC122341356
TU33550 other downstream 417578 23158249 ~ 23163716 (+) False prr15la
XR_006250499.1 other downstream 662770 23403441 ~ 23408814 (+) True LOC122341907
unassigned_transcript_294 other downstream 1095428 23836099 ~ 23836180 (+) True trnas-aga_1
TU34051 other downstream 1309568 24050239 ~ 24051863 (+) False LOC122342055

Expression Profile