Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_043230303.1 |
| length | 1123 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 2 |
| gene id | hoxb6a |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_056701.1 |
| NCBI id | CM032070.1 |
| chromosome length | 30200998 |
| location | 22719460 ~ 22721579 (+) |
| genome version | ASM1883169v1_2021_tiger_barb_Genome |
| species | tiger barb (Puntius tetrazona) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| id | description |
|---|---|
| K09306 | HOX_6; homeobox protein HoxA/B/C6 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU33156 | lncRNA | upstream | 46549 | 22598018 ~ 22672911 (+) | False | G22340 |
| TU33157 | lncRNA | upstream | 79098 | 22511428 ~ 22640362 (+) | True | G22340 |
| TU33113 | lncRNA | upstream | 383239 | 22288141 ~ 22336221 (+) | False | hdac5 |
| TU33114 | lncRNA | upstream | 432415 | 22269177 ~ 22287045 (+) | False | hdac5 |
| TU33106 | lncRNA | upstream | 655360 | 22035917 ~ 22064100 (+) | False | LOC122341843 |
| TU33382 | lncRNA | downstream | 2465 | 22724044 ~ 22725888 (+) | False | hoxb5a |
| TU33399 | lncRNA | downstream | 44167 | 22765746 ~ 22766130 (+) | False | hoxb2a |
| TU33447 | lncRNA | downstream | 177754 | 22899333 ~ 22903541 (+) | False | LOC122341356 |
| TU33448 | lncRNA | downstream | 177754 | 22899333 ~ 22901102 (+) | False | LOC122341356 |
| TU33452 | lncRNA | downstream | 184163 | 22905742 ~ 22906695 (+) | False | LOC122341356 |
| XM_043225706.1 | mRNA | upstream | 7403 | 22707994 ~ 22712057 (+) | True | hoxb7a |
| XM_043228340.1 | mRNA | upstream | 12723 | 22703924 ~ 22706737 (+) | True | hoxb8a |
| XM_043228350.1 | mRNA | upstream | 12723 | 22703945 ~ 22706737 (+) | False | hoxb8a |
| XM_043235998.1 | mRNA | upstream | 20289 | 22691178 ~ 22699171 (+) | True | hoxb9a |
| XM_043225470.1 | mRNA | upstream | 29769 | 22685013 ~ 22689691 (+) | True | hoxb10a |
| XM_043230282.1 | mRNA | downstream | 443 | 22722022 ~ 22726158 (+) | True | hoxb5a |
| XM_043230208.1 | mRNA | downstream | 5297 | 22726876 ~ 22765536 (+) | False | hoxb3a |
| XM_043230201.1 | mRNA | downstream | 11750 | 22733329 ~ 22765536 (+) | False | hoxb3a |
| XM_043230254.1 | mRNA | downstream | 11750 | 22733329 ~ 22765536 (+) | False | hoxb3a |
| XM_043230295.1 | mRNA | downstream | 14360 | 22735939 ~ 22740671 (+) | True | hoxb4a |
| TU33136 | other | upstream | 172252 | 22546158 ~ 22547208 (+) | True | G22329 |
| TU33161 | other | upstream | 189400 | 22528989 ~ 22530060 (+) | True | G22344 |
| XR_006248300.1 | other | upstream | 693549 | 21976509 ~ 22025911 (+) | False | wnk4b |
| TU33098 | other | upstream | 742795 | 21975252 ~ 21976665 (+) | True | G22301 |
| XR_006248723.1 | other | upstream | 985333 | 21637743 ~ 21734127 (+) | False | crhr1 |
| TU33451 | other | downstream | 183798 | 22905377 ~ 22906695 (+) | False | LOC122341356 |
| TU33550 | other | downstream | 436670 | 23158249 ~ 23163716 (+) | False | prr15la |
| XR_006250499.1 | other | downstream | 681862 | 23403441 ~ 23408814 (+) | True | LOC122341907 |
| unassigned_transcript_294 | other | downstream | 1114520 | 23836099 ~ 23836180 (+) | True | trnas-aga_1 |
| TU34051 | other | downstream | 1328660 | 24050239 ~ 24051863 (+) | False | LOC122342055 |
