RNA id: XM_043230754.1


Basic Information

Item Value
RNA id XM_043230754.1
length 1574
RNA type mRNA
GC content 0.45
exon number 10
gene id arpc1b
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 15823776 ~ 15828983 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAGCATATTTGGAGAGAAAAACGACTGAGGAAATACTTTAGTTCATTCAGAGCAAAGCCAGCGTTTGTGTTGACTGCTCAGAGTCCACGAACTCAGGCTTCTGTTGCAGACTTTGTCAATCCCCCCCACATCTCAGTTTTTTACGGTTTCCTGGGAAAAAGCAGCTATGTCTTATCACAGTTTTCTTCTTGAACCTATCAGCTGCCATGCCTGGAACAAGGACCGAACTCAAATTGCACTGTGTCCTAATAACCACGAAGTCCATATCTACAAGAAGGATGGAAGCAACTGGAACAAAATCCATGTGCTGAAGGAGCACAACGGCCAGGTTACTGGCATTGACTGGGCCCCAGAGAGCAATCGTATTGTGACCTGTGGCACTGACCGTAACGCCTATGTCTGGACCCTAAAGGGAGATGCATGGAAGCCCACCCTGGTCATCCTCAGGATCAACCGTGCTGCTCGCTGTGTGAAATGGTCTCCTAAAGAAAACAAGTTTGCAGTGGGCAGTGGCTCACGGCTGATCTCAGTCTGCTATTTTGAGCAGGATAATGACTGGTGGGTGTGCAAGCACATTAAGAAGCCCATCCGCTCCACCATTCTTTGTTTGGACTGGCACCCCAATAACATCCTTTTGGCAGCTGGAtcgtgtgactttaaatgcagGATCTTTTCCGCTTACATAAAGGAAGTAGAAGAGAAGCCTGCTCCAACAGCGTGGGGCTCGAAAATGCCCTTTGGAGAGATCATGTTTGAATCTACTGGAACTTCAGGTTGGGTACACGGTGTTTGTTTTTCGGACAGCGGGAATCGTGTGGCCTGGGCCAGCCATGACAGCACCGTGGCAGTGGCTGAGGGAGGAAAGACTGCTGTCTGCGCCAGTCTGACTTCAGAAACCTTGCCTCTTCTGTGTGTGACTTTCATTACTGAGAACAGCCTAGTTGCAGCTGGCCATGACTGCTACCCCGTGTTGTTTGTCTATGATTCGAACAAAGCAGCCTTGTCTTTTGGAGGGAAACTCGATGTGCCCAAACAGAGTGCTCAGAAGGGCATGACAGCCAGAGAACGCTTCCAGAACCTGGATAAGAAAGCCACTGCTGACAGCAAAGAAGCCGTTCTGGAGTCTGTGCACAAGAACAGCATCAGCCAAATTTCAGTTCTTAATGGAGGAAAAGCACAGTGTGCCAAATTCTGCACCACTGGTATGGATGGAGGCATGGCTATTTGGGATGTAAAGACCCTTGAATCTGCAATGAAGGACCTCAAGATTGTCTAGACATAGCAGACACCGGAACAAAACGTCTGCAATTCATATCGCTTgccttttcatcatttttttaaatgcagttgtctataatttttttcaagattATGTTTAGATTAACAGTTTTAGTAGTTTAAGGATTTTATACTGATGAAATTTAGCAAACCTGTTCTGGATGAACCAATAACTGAATTTTGTCAGAATTTATATGCTGGTCATAAATTGCTTTTCTTTAAGTAGTGCAGGTGCCATTGCATTGGatttttaataaactgcaactgaatctaataaaataaacatgattgcTTA

Function

GO:

id name namespace
GO:0030833 regulation of actin filament polymerization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K05757 ARPC1A_B; actin related protein 2/3 complex, subunit 1A/1B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30435 lncRNA upstream 79605 15706936 ~ 15744171 (+) False fscn1a
TU30436 lncRNA upstream 95906 15716197 ~ 15727870 (+) False LOC122334397
XR_006248753.1 lncRNA upstream 98420 15714732 ~ 15725356 (+) True LOC122334397
XR_006248755.1 lncRNA upstream 102473 15720247 ~ 15721303 (+) True LOC122334400
TU30422 lncRNA upstream 234967 15587212 ~ 15588809 (+) True G20415
TU30474 lncRNA downstream 33030 15862013 ~ 15864962 (+) True G20452
TU30488 lncRNA downstream 43819 15872802 ~ 15873925 (+) True G20465
TU30489 lncRNA downstream 45050 15874033 ~ 15875311 (+) True G20466
TU30490 lncRNA downstream 45839 15874822 ~ 15875959 (+) False G20466
TU30492 lncRNA downstream 49206 15878189 ~ 15878426 (+) True G20468
XM_043235664.1 mRNA upstream 341 15819654 ~ 15823435 (+) True arpc1a
XM_043235355.1 mRNA upstream 79582 15737339 ~ 15744194 (+) True fscn1a
XM_043235658.1 mRNA upstream 126402 15639017 ~ 15697374 (+) True tnrc18
XM_043228555.1 mRNA upstream 205712 15608385 ~ 15618064 (+) True slc29a4a
XM_043230767.1 mRNA downstream 6100 15835083 ~ 15846966 (+) False mmd2a
XM_043230786.1 mRNA downstream 8443 15837426 ~ 15846966 (+) True mmd2a
XM_043230776.1 mRNA downstream 8926 15837909 ~ 15846966 (+) False mmd2a
XM_043235413.1 mRNA downstream 321870 16150853 ~ 16175090 (+) True card11
XM_043234675.1 mRNA downstream 350637 16179620 ~ 16207846 (+) True gna12a
TU30209 other upstream 638903 15149112 ~ 15184873 (+) True G20286
TU30221 other upstream 654518 15168338 ~ 15169258 (+) True G20295
XR_006250537.1 other upstream 1153096 14670596 ~ 14670680 (+) True LOC122342191
XR_006250538.1 other upstream 1157247 14666446 ~ 14666529 (+) True LOC122342192
XR_006250536.1 other upstream 1157854 14665838 ~ 14665922 (+) True LOC122342189
TU30661 other downstream 350927 16179910 ~ 16205168 (+) False gna12a
TU30773 other downstream 861720 16690703 ~ 16699482 (+) True LOC122331507
TU30774 other downstream 861720 16690703 ~ 16699482 (+) False LOC122331507
TU30775 other downstream 869016 16697999 ~ 16699482 (+) False LOC122331507
unassigned_transcript_287 other downstream 1176931 17005914 ~ 17005985 (+) True trnat-cgu_1

Expression Profile