RNA id: XM_043230786.1


Basic Information

Item Value
RNA id XM_043230786.1
length 1553
RNA type mRNA
GC content 0.50
exon number 8
gene id mmd2a
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 15835083 ~ 15846966 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaatgcgctGAGAGCATGTCGGAAACGTTGAGATGTGATACCCGACCACTGTAATTATATCTTCCAGTCATGAAAATAACGaccaattttaaaacaaacaacaaaaaaagtttgttaatgACAGGATTTAACCGAACACCCCCAGATGCGCGTAAGGCTACGTAGGAAAACATGAGGGTTTTGCTGAACGGCGTGCGTGTAACGGATCTCAGCTTGTTTGCGTCTTTCTAAACAAACATAGCTAAAGCAAACATCCGACGGGCAACGGACCAACGTGATGCAGTTCGTCGGGAGCGAGCCTTTCCCAAGTTCACTTTGAAGGTAGCGAAGGGGCGGAGAGGGGATCGAGCGCAGCTGCATTCCTGACCGGGAGAGAGCGGCTCGCTTTACGGTTATCACAGAAACCCGCTGTCAgtctctcagctcctctcgGACGCGCCGGTCTTCACGCGCTGCTTCAGGCGCCGCCGCTTCCTCCCAAGTTTTGGACACTCTGAAGCGAGTCCGCCCGTCGCTTTCGCTGGGAGCAGACGGTCCGTCCACCCGGGAGCCAGCTCCGCAGCGAACATGTACAAATATGTACGGTATGGATTTTAGGAGGACGAAGCTCGGCAGAAGAACCGGCCTTCATGAAGCTGGAGCGTATGAAAGGATAATGAACAAGGTTTTATCAAAAGACGACGTAGCCTAAGCCACTTTATCACGACTTCCGTTTGATTACTTGCATgttTATGAACAACCGAGTCCCATCTAGCAAGAGATACCAGCCAACCGAGTATGAGCATGCAGCCAACTGTGCCACTCATGGATTCTGGATCATTCCCAGTATCCTGGGCAGCTCAGTGTTGTACTTCCTCTCTGATGACCAGTgggagaccatctctgcatggATGTATGGGACAGGTCTCTCTGGGCTGTTCATCATGTCCACCATGTTCCATACGGTGTCCTGGAAGAAAAGTCATCTcagGAAGGTGGAGCAGCGATTCCATATGTGCGACAGGATGGtgatatatttctttattgctGCATCTTATGCACCCTGGCTGAACCTGAGGGAGCTAGGACCCTGGGCTGTGCACATGCGCTGGTTGGTGTGGATCATGGCTTGCGCTGGCTCTGCCTATGTCTTCTTCTTTCATGAAAAGAACAAGATCCTAGACTTACTGTGCTACACTGCCATGGGAGCTGTTCCTGCAGTTGTTCTTCTGTCAATGCCTAACAGAGAGGGCATATTAGAGCTGTCAGTGGGCGGAGTCTTCTACTGCCTGGGAATTGTCTTCTTCAAGAGCGACGGCCTCATCCCATTCGCTCATGCCATCTGGCACGTCTTTGTGGCCGTGGGGGCAGGAATACACTATTACGCCATCTGGAGGTACTTGTATGCAACGGGGACCGGCCAAATCAAAATATCCAGGTGACAGACGGAGATCTCAAGCGTGTTCACACATACAGGGTTTGTCGAGCTATAAAGACAATGTATTTGATCATGAGTTGCCTTTGCATCCCTCTATATTAATCATAGACGGGTATGCTTTAGTACTGTTggccta

Function

GO:

id name namespace
GO:0019835 cytolysis biological_process
GO:0003007 heart morphogenesis biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K11064 MMD; monocyte to macrophage differentiation protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30435 lncRNA upstream 93255 15706936 ~ 15744171 (+) False fscn1a
TU30436 lncRNA upstream 109556 15716197 ~ 15727870 (+) False LOC122334397
XR_006248753.1 lncRNA upstream 112070 15714732 ~ 15725356 (+) True LOC122334397
XR_006248755.1 lncRNA upstream 116123 15720247 ~ 15721303 (+) True LOC122334400
TU30422 lncRNA upstream 248617 15587212 ~ 15588809 (+) True G20415
TU30474 lncRNA downstream 15047 15862013 ~ 15864962 (+) True G20452
TU30488 lncRNA downstream 25836 15872802 ~ 15873925 (+) True G20465
TU30489 lncRNA downstream 27067 15874033 ~ 15875311 (+) True G20466
TU30490 lncRNA downstream 27856 15874822 ~ 15875959 (+) False G20466
TU30492 lncRNA downstream 31223 15878189 ~ 15878426 (+) True G20468
XM_043230754.1 mRNA upstream 8443 15823776 ~ 15828983 (+) True arpc1b
XM_043235664.1 mRNA upstream 13991 15819654 ~ 15823435 (+) True arpc1a
XM_043235355.1 mRNA upstream 93232 15737339 ~ 15744194 (+) True fscn1a
XM_043235658.1 mRNA upstream 140052 15639017 ~ 15697374 (+) True tnrc18
XM_043228571.1 mRNA upstream 219362 15610502 ~ 15618064 (+) False slc29a4a
XM_043235413.1 mRNA downstream 303887 16150853 ~ 16175090 (+) True card11
XM_043234675.1 mRNA downstream 332654 16179620 ~ 16207846 (+) True gna12a
XM_043235238.1 mRNA downstream 365401 16212367 ~ 16221215 (+) True eif3ba
XM_043235826.1 mRNA downstream 375234 16222200 ~ 16229178 (+) True chst12a
XM_043235266.1 mRNA downstream 446256 16293222 ~ 16301224 (+) True lfng
TU30209 other upstream 652553 15149112 ~ 15184873 (+) True G20286
TU30221 other upstream 668168 15168338 ~ 15169258 (+) True G20295
XR_006250537.1 other upstream 1166746 14670596 ~ 14670680 (+) True LOC122342191
XR_006250538.1 other upstream 1170897 14666446 ~ 14666529 (+) True LOC122342192
XR_006250536.1 other upstream 1171504 14665838 ~ 14665922 (+) True LOC122342189
TU30661 other downstream 332944 16179910 ~ 16205168 (+) False gna12a
TU30773 other downstream 843737 16690703 ~ 16699482 (+) True LOC122331507
TU30774 other downstream 843737 16690703 ~ 16699482 (+) False LOC122331507
TU30775 other downstream 851033 16697999 ~ 16699482 (+) False LOC122331507
unassigned_transcript_287 other downstream 1158948 17005914 ~ 17005985 (+) True trnat-cgu_1

Expression Profile