RNA id: XM_043230813.1


Basic Information

Item Value
RNA id XM_043230813.1
length 3870
RNA type mRNA
GC content 0.46
exon number 21
gene id LOC122333258
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1925747 ~ 1941793 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGTTTAGAGACTGCTCCCAGTTCAAATGTCAGTCCACCCACTTCTAATAAAGCTGATGAGAAGTTTCAGTTCAGCATCACTGCATTCAGCTGCTGAAGAGAGAGACCGAATCTGCAGCATCTCAGCTCAGCGTAATACAGCGAGAGACTGAAGAGACTGTGTGCAGGATGAGGTTTCTGATCTCTGTGTCGCTGCTGCTGTTGATTCGTGGTCCTACAGCCTCCAGCTCTGATCCCTGCAGTAACTACACCACTCTGGATGAATACTGGAGAGACATGCAGACGAACTACTACATGCCTTCGAGTAACGACGCTCTTGTTGAATGGAGGGGCTGGTATCGGCTGTATCTGAGAGGACTCAGCGCTCAGGTGTCCGAGTGGTGTGTGAGTAACACTCAGTGCACCGGTGAAACCGGACTGTTTCTCAATGGTTCTCATCCCGGACCGGCCGATGGAGTGGTGACCCGTGAAGTGCTGGGAACCTGGCAGGGCTCGTCTTCCTCTTGTGGCAGCTACAAATCCAACTCCATTCGAGTCAAAGCTTGTCCCGGAGATTACTACGTCTATGAACTTGTCAAACCCAACGCATCGATCCCTAGGCCTGTGTACTGCGCAGTTGCTTTCCAAACCATCAGCAGTGATCCCTGCTACAACTACAAGTCTCTAGATCGTCCCTGGAGAGCCAACAATGAAAGTGGAGATTACATTTGTGATCTTTATTTCTCCTGGAACGGCTGGTACCGGCTTTTCTACCATGGAATGGACATCCAGCTGTCAGAGACCTGTGTTAGCTCATACAGATGTAACTCTCAGATTACTCTGTGGCTCAACGGTTCTCATCCTCGTATTCAGGATGGAGTGGTGGTCAGACAGGTCTGTGGGACTTCTGGAAGTCAATGCTGTGATTACAAAACAGGACCAATCAGAGTTAAAGCATGTCCAGGAAATTACTATGTCTATGAACTTGTGAGGCCAAACAGTTGGTGTGCGGGATACTGTACAaATATTAGCACCATTTCTCAGCCAATTTCCACTGTAAGTCCAGCTATAACCACTAGAATTGACAACTCTCTGAATTTTGACCCATGCATGAATTACAGCAGGCTCAATGACTACTGGAGAAACGTCAGGGATGGATATGGATACAATTACGATGACACAGATGTAAACTGGGATGGCTGGTATCGACTCTTTATTAATGGACTCAGTGCGCAGATGAATGAATGGTGTGTGTCTTATGCGACATGTGGAGGTTATAGTGCTCTGTGGCTTGCTGGATCTCATCCTCGAGTAGAAGATGGAGTTGTTACTCGTGACGTTTATGGCTCTCGTAATGAGAAGTGCAGTTATTACAGATCCAGCCCAATCCAAGTCAAAGCTTGTCCTGGGAACTATTTTGTATACAAACTTACCAGACCTTCTCTTTCAATCCCAGCTCCTACATATTGTGCAGTTGCTTTCCAAAGCATCAGCAGTGATCCCTGCTACAACTACAAGTCTCTGGATCGTCCCTGGAGAGCCAACAATGAAAGTGGAGATAacatttgtgatatttatttctCCTGGAACGGCTGGTACCGGCTTTTCTACTATGGAATGGACATCCAGCTGTCAGAGACCTGTGTTAGCTCATACAGATGTAACTCTCAGATGAGCCTGTGGCTCAACGGTTCTCATCCTCGGATTCAGGATGGAGTGGTGGTCAGAGAGATCTGTGGGAATTATGGGAGTCAGTGCTGCGAATACAAAACAGGACCAATCAGAGTTAAAGCATGTCCAGGAAATTACTATGTCTATGAACTTGTGAGGCCAAACAATTGGTGTGCGGGATACTGTACAAATATTAGCACCATTTCGCAGCCAATTTCCACTGTAAGTCCAGCTATAACCACTAGAATCAACAACACTCTGAATTTTGACCCATGCATGAATTACACCACACTCAATGACTACTGGAGAAACATCAGGTATCGATATGGATACAGTTACGATGACACAGATGTAAACTGGGATGGCTGGTATCGACTCTTTATTAATGGACTCAGTGCGCAGATGCCTGAATGGTGTGTATCTTACTCAACATGTGGAGGTTATAGTGCTCTGTGGCTTGCTGGATCTCATCCTCGACTAGAAGATGGAGTTGTTACTCGTGACGTTAACGGCTCTCATAATGAGCAGTGCAGTTATTACAGATCCAGCCCAATCCAAGTCAAAGCTTGTCCTGGGAACTATTTTGTATACAAACTTACCAGACCTTCTCTTTCAATCCCAGCTCCTACATATTGTGCAGTTTCAGTGAACAtggctttatttacGTTTCACCCCCCAAGTGTTGACCCATGCTACAACTATAACAGTCTGAATGAGGCTTGGAGAGCAACAAACAATTCTTACAGTGGTAACAATCTTAAGTGTGACAGCTTCCAGGAGGGCTGGTACAGGCTGTTCTACAATGATCAGAGTGCCCAGATGCCAGAATCATGCGTTAATCAATACATGTGTGGCACTTACATGTCAATGTGGCTCAACGGCTCTCATCCGCGGCTGGAAGATGGAGTGGTGACCCGTCAGGTCTGTGGCTCCGGATGGACTGGCTGCTGTACTTACAGATCTCTCCCTATACAAGTCAAAGCCTGTCCAGGAAATTACTATGTTTATGAGTTTGTCAACCCAATATTCTGTGGAGCTTACTGCACAGATGTCACAAGGCTTAATGCAGCCTcttcaacaacaacatcaacacCAGCAACAACAGCATTCATTACTCCAACCACTAGTGAAATGGATCACTGTTCTGAACTCAGCTGCTCTGAGGATGAacactgtgggaaaaaaaatggtgtttatGGCTGTTTGTGTAACACGAACCATTACGGACAGCAATCTGAATTTTTTGATTCCTCAGAAACCTGTGAAAGCAGCTCTGGCTCCATGTCTGTGTCTCGCTGTCAGCTCTTTGAGGCTGGTTATTCGGCTGATATCTTACATCTCAATGATCCCAGCTGCAGAGGAACAGTGAGGAATGGCAGAGTGGAATTTCATTTTGACAACGACGAGCACATCTGTGGAACAAACCTTGTGGCCAATGGCACCCACTTCATCTATGATAACTTCATTTTGGGAACACCGAGGTCAGAAGGCCTCATCAGCAGAGTGAAGGTTTTGAAGCTTTCTTTCAGCTGTGCTTAtcctcaaacacaaacactttccATGAATGTGGAAATCAACCCACTAGAGAGCATTGTGCACAAGAGCCTTCCAGCGGGTGAAGGCACGTATCGGGTTCGGATGATTCCATTTCAGGATGATAAGTTTACCCGGCCCTTCACTGGTGGTGTAGATGCAGAGCTCAACCAGGAGATGCACGTGGAAGTTCGTGCCGAGGGGGTTGACAGCCGGCAGTTTGCTCTGGTGATAGACACTTGCTGGGCTACACCGGTGAATGATCCTGATTACAGTCTCCGTTGGGATCTCATCGTCACAGAGTGTCCCAATCCAAATGACGACACGGTGGAGCTGCTCCAGAGCAGCGTCTCAACCTCCAGCCGTTTCTCCTTCAAGATGTTCATCTTCACTGCAAACTCCACTAAGCTTTACCTGCACTGTGCTGTTCACCTTTGCCTTCTGTCAAGCAATCACTGCTCAGTGAACTGTAGCTCTGGGCAGCACTGGAGAAAGCGCAGGTCTCTGGACTTTCATGACAGTTCTTCCATATCCATGGGTCCTTTAATGTTGTCAGAAGGAAACACagATACGTGGGTCAAAGACAAAGTGAAGGTCTCTAAGGCTTCTTCTCTGAGTGCTTCTCTGATGGTGTTGTTTGTCTTTATGATGAGTGTCttgattcttttttaaaacatctttgaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23808 lncRNA upstream 34720 1871280 ~ 1891027 (+) False G16017
TU23807 lncRNA upstream 52227 1871280 ~ 1873520 (+) True G16017
TU23770 lncRNA upstream 60518 1619907 ~ 1865229 (+) False G16002
TU23827 lncRNA upstream 70063 1854895 ~ 1855684 (+) True G16033
XR_006248080.1 lncRNA upstream 99430 1824790 ~ 1826317 (+) True LOC122330751
XR_006248070.1 lncRNA downstream 896 1942689 ~ 1943729 (+) True LOC122330717
TU24127 lncRNA downstream 82555 2024348 ~ 2320138 (+) False G16222
TU24151 lncRNA downstream 86601 2028394 ~ 2030843 (+) True G16233
TU24161 lncRNA downstream 101858 2043651 ~ 2046384 (+) True G16243
TU24140 lncRNA downstream 108392 2050185 ~ 2056000 (+) True G16226
XM_043227073.1 mRNA upstream 55137 1867624 ~ 1870610 (+) True LOC122330213
XM_043230436.1 mRNA upstream 195750 1728370 ~ 1729997 (+) True LOC122332958
XM_043226184.1 mRNA upstream 198054 1711295 ~ 1727693 (+) True LOC122329718
XM_043227003.1 mRNA upstream 225084 1693056 ~ 1700663 (+) False LOC122330144
XM_043226579.1 mRNA downstream 60886 2002679 ~ 2010431 (+) True rangap1a
XM_043235918.1 mRNA downstream 189425 2131218 ~ 2140821 (+) True si:ch211-106h11.3
XM_043230556.1 mRNA downstream 218553 2160346 ~ 2165693 (+) True LOC122333054
XM_043235185.1 mRNA downstream 319817 2261610 ~ 2267508 (+) True LOC122341668
XM_043235186.1 mRNA downstream 325795 2267588 ~ 2270464 (+) True LOC122341669
unassigned_transcript_275 other upstream 59962 1865713 ~ 1865785 (+) True trnar-ccu_2
unassigned_transcript_274 other upstream 275019 1650656 ~ 1650728 (+) True trnar-ccu_1
TU23775 other upstream 279215 1644778 ~ 1646532 (+) False G16003
TU23777 other upstream 279319 1644778 ~ 1646428 (+) False G16003
TU23799 other upstream 302353 1620931 ~ 1623394 (+) True trnar-ccu
TU24128 other downstream 114888 2056681 ~ 2063784 (+) False G16222
TU24131 other downstream 114888 2056681 ~ 2063784 (+) True G16222
TU24132 other downstream 116884 2058677 ~ 2063784 (+) False G16222
TU24133 other downstream 170244 2112037 ~ 2114339 (+) True G16223
TU24191 other downstream 219052 2160845 ~ 2165614 (+) False LOC122333054

Expression Profile