RNA id: XM_043230902.1


Basic Information

Item Value
RNA id XM_043230902.1
length 1812
RNA type mRNA
GC content 0.49
exon number 9
gene id napsa
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 23655511 ~ 23661345 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCCGAAAGCCGCTTTGGCTGTAAGAGTTGCGCGCGAGGGGCGACGGTGCGggttatatctcacaattgcgTCTGCGAGTTTTGATTCAcaccagaaataaaaaaaaaacggttttgttttaaagagcgTAAAATGAACCGCTTTCACCCGTTTGCGATTTTAATCTGGCTGCTAATCGCGGACAGTCAAGCAATAATCAGGATCCCTCTGCACAAGATGCGCACCGTGCGCCGCATGCTGGCGGAGAATGGAAGAACAATCGACGAGATCAAATCCATGGCCAGAGATCAGGCCTCCAAAGTCAATTCTTCACCGCAGGCCACAACTACACGCTCACCATCGCCAACAAAACTGCCACCGCCTATTGAGAAACTCACCAACTTCATGGATGCTCAGTACTTCGGGGTGATCAGCATCGGCACCCCTCCTCAGGACTTCACTGTGCTGTTCGACACCGGGTCGTCCAACCTCTGGGTTCCCTCTGTCCATTGCTCCTACCTGGACATCGCGTGCTGGTTGCACCGTCGCTACAACTCTAAGAAGTCCAGCACGTATGTTAAGAACGGCACGCAGTTCTCCATCCGCTACGGCAGAGGGAGTCTCACCGGCTTCATCAGTCAGGATACGGTCACTCTGGCAGGGCTGAAGGTGCCAAACCAGCAGTTTGCAGAGGCGGTCAAACAGCCTGGGATTGTGTTTGCGGTGGCACGTTTCGATGGCATCCTGGGCATGGCGTACCCTGCCATTTCTGTAGATGGGGTTACGCCGGTGTTTGACACGGCCATGGCTGCCAAGATCCTGCCTCAGAATATCTTCTCTTTTTATATCAACCGGGACCCCGCAGGTGAAGTGGGAGGTGAGCTGATGCTGGGAGGCTTTGACCAGCAGTATTTTGATGGCGATCTGCATTACGTCAACGTCACACGGAAAGCCTACTGGCAGATAAAGATGGATAAAGTTCAGGTGGGCGGCACTCTTACCCTCTGCAACAGTGGATGCCAGGCAGTTGTGGACACGGGAACGTCAATGATCACGGGGCCGGTTCAAGAGGTGCGGGCGCTGCAGAAAGCCATCGGAGCCATACCCCTGCTGATGGGAGAGTACTGGATTGACTGCAAGAGGATTCCATCACTTCCTGTTGTTTCTCTCAGCCTGGGAGGGAAGAAGTTCAACCTAACTGGGGAGGACTACGTTTTGAAGATGAGTCACATGGGTGtcagtgtctgtctgtctggctTCATGGCAATGGATATCCCCCCCCCTGCCGGGCCGCTGTGGATTCTGGGAGACGTGTTCATCGGTCGCTACTACACTGTGTTTGACAGGGAGACAGACCGCGTGGGCTTTGCTCCTGCTAAATGAAAAGACTGATAAACAATCACATCGTTGTATTGTACTGGAGAGAATGGGCCATTATCAGTACAGTACTGGTCTATTGCAGTTTGAAATATGGCTGAGCGACAGGACTGGCTCTTTCAGGTATGAAACTCCAAAAGAAGAAGCGAGACAAATTTGTTGAGCTACGATTATCTGTACTTCCCGCTTGAAGCcttgctctttttatttttcactgtttgaatagatgaataaaaataaaaaaaagcatttttagtttattattaagctattaaatattttgtagaaaatTTACTAAAGATTGAATGACTTGGTAGATGAATAGTTCTTTAGATTTGCGTCTCTGAATTGTATTTCTGTTAAAGCTGATCAAGACTACTCGGTTTCTTTATTGTCTAATCATTTAACTCGCTGCAGTTCTTCCGAATCTGAAGTTAAATAAAGCTTTGTTTGTA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004190 aspartic-type endopeptidase activity molecular_function

KEGG:

id description
K01379 CTSD; cathepsin D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33792 lncRNA upstream 9345 23578476 ~ 23646166 (+) False G22758
TU33791 lncRNA upstream 33857 23578476 ~ 23621654 (+) True G22758
TU33788 lncRNA upstream 77270 23574898 ~ 23578241 (+) True G22757
TU33784 lncRNA upstream 92265 23563040 ~ 23563246 (+) True G22754
TU33712 lncRNA upstream 223745 23430004 ~ 23431766 (+) False zmp:0000000912
TU33837 lncRNA downstream 6560 23667905 ~ 23672990 (+) True G22800
TU33831 lncRNA downstream 10049 23671394 ~ 23749009 (+) True G22795
TU33845 lncRNA downstream 53881 23715226 ~ 23721719 (+) False c1qtnf6a
TU33840 lncRNA downstream 93177 23754522 ~ 23755997 (+) True G22802
TU33856 lncRNA downstream 97398 23758743 ~ 23759342 (+) True G22816
XM_043235549.1 mRNA upstream 10971 23636361 ~ 23644540 (+) True st13
XM_043235508.1 mRNA upstream 67883 23582431 ~ 23587628 (+) True cbx7a
XM_043235087.1 mRNA upstream 175220 23444986 ~ 23480291 (+) True mrtfaa
XM_043235613.1 mRNA upstream 211437 23438398 ~ 23444074 (+) True slc25a17
XM_043235579.1 mRNA upstream 225109 23424621 ~ 23430402 (+) True zmp:0000000912
XM_043230858.1 mRNA downstream 12687 23674032 ~ 23681012 (+) True si:ch211-256m1.8
XM_043235475.1 mRNA downstream 21140 23682485 ~ 23684711 (+) True mpst
XM_043235476.1 mRNA downstream 23508 23684853 ~ 23687289 (+) True LOC122341829
XM_043235515.1 mRNA downstream 34848 23696193 ~ 23705438 (+) False il2rb
XM_043235509.1 mRNA downstream 34851 23696196 ~ 23705438 (+) True il2rb
XR_006250499.1 other upstream 246697 23403441 ~ 23408814 (+) True LOC122341907
TU33550 other upstream 491795 23158249 ~ 23163716 (+) False prr15la
TU33451 other upstream 748816 22905377 ~ 22906695 (+) False LOC122341356
TU33136 other upstream 1108303 22546158 ~ 22547208 (+) True G22329
TU33161 other upstream 1125451 22528989 ~ 22530060 (+) True G22344
unassigned_transcript_294 other downstream 174754 23836099 ~ 23836180 (+) True trnas-aga_1
TU34051 other downstream 388894 24050239 ~ 24051863 (+) False LOC122342055
TU34052 other downstream 389393 24050738 ~ 24051863 (+) False LOC122342055
TU34076 other downstream 433679 24095024 ~ 24097159 (+) True G22958
TU34141 other downstream 772710 24434055 ~ 24439463 (+) True G22996

Expression Profile