RNA id: XM_043230952.1


Basic Information

Item Value
RNA id XM_043230952.1
length 2461
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC122333376
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2293303 ~ 2296045 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTgcatgtgatatatatatatatatatatgccacaCATGCACAGAATGAGTAAAAACTGGTCTCTAGATCGCAGCATACTTTGCTTGTGTTAGTCAACGaagagtaaaaatgttaaaattaactgTTATCTAATGTGTTTTTGCTCCATATTAATATTTAGGGGGAGATCTGTTAGTGTTTAATGTTGcgttatttttgaaatgtgaaaaagttgtgtaattattattgtgCAGAAGAGTAGAGCCTGTGAGGACGATGACTGGccaaatgatacatttttatatttattgttgtattatttaaaacgtCATGGCCGTGCACTTTTCAGCACAATGAGCGTCTGTTCTCTATACTGTGACGTTATTGTCATCATCGCCCCGCCCTTCACcgggctcccgacgggagtgggtgtgtccgagaggaggggcgcctggtgaagggcggggcgatgatgacaataaaggggaggggcagccgactcgtcacaatactCTTTCGTAACATAAACAAGAAACTGATCTGCTTTCTTACAAACAGGAAGTGTCTCAGGAAGCgtcgcaaaactgaagttgatctactgatgtcacatgggctgttttaccaatgtatttacTGTGTTTCTGGACCCGGATCATTTCAGTTGGTCAGATACCTCtctgatttgatcaaaaatgtctttcagatggtgaattttcattttggggcgaATTAACCCTTTAAGGACAATAAATCAAGTCATGTATCATGTACGTGCGGCATAAATAGGCGTTACTGTTACAAACCCctgtttaaatgattaaattaaattcgcAAACGGAGGTGAACAGAACATCAAAGAAACGCAGATccgaaagaaaaaagaaaaggttccAAAAAGAACTTGTAGGAAAAAAGGGGAGATAAAACTCCAgcgtaagaaaaaaaaccaaaatattaataaacctaaatcaaaagaaaagaaaaataaaacttgttaGATACAGGGAGAACCTGCAAACTCCACAGAAAGGCCTCCTGTATCAGTCTGGGCTTGAACCGGGGATCTTCTGGCTGCTGTATAAACCGCTTAAGGGAAGTGACACGAGAGACGCTCCAGTGACCAAGGCGTTAATAAAAACAGGGCGCTTATAATTTGCTGGGTGTTTCCACTACGTGAACGACAAGaATACACTTGGTCAAGTGTGAAGACAAACACCAGACTAAGACTGCTTTATTTCTGGTACAATTAGCTTAAATCTCTGCTACGCCAAGGAGATGAATCTCGAGGTACTGGAAGAAAACCCACCTGATGTCACTTTAGATCACATAGCTAAGGACttggtgtctttttttaatgggtTTAAACGCTTCAATGAGGTTAGAAGACGGCTTGAAAAGAAATGCACCATTAAAACGGAGCGTGAACATAAATGCTGGTCAGAAGATAACATCAAACAAGCTTGGcgagaaacaataaaaaagcgTAAAAAGTCAGACAAAAGAAGACAACGGGCCGGTGTGATAATATTGCAGATCGTAGAAAGTTTTGTTTGTGATATGTGTAAACAAAATAGAGCACAGAAGAAGCTTCACGCTACAAGCGATCAACAAGTCTGTGAAATGAGAAGACACTCGGAAGACAGAATAAGTGAAAGCGAAGCTGAACTAGAGCGAGCGGGAGCCGCTGGAGGAGATGAGCAGAGAAGAAAACAGGTGTGTGAAGCATCTAAACGTTCAGACCATTCTGCTCCTGCGTCAAGAAGTCAACTTTCAGCTTCTAGAACAGATGAAGCGAATCCGAGCAAAAGTGAAACCAAGAAGGCACTTAAGAATCAGGTCACTTTAGCTAAAAACTGTGAGCAGCAGAAAAGTATCGACTTGCATAATGTGCATGATAAAGAGAGCGAAAGGTCGAAAAATGGTCTTCGGTCAACTGTTAGAAAAGAATTTGTCAAAGCACGTATAACCGATGTAGAAGACGGATCGCCTCAAGGAGCTGCTGAAGGAGTTAAGCGGAAAAAAATCAGTAATCAAGGGCAAACAAGTAGCAATCAGAGCCAAACTGGGACGCCATTTCAGGCCAAGAAAAAGTCCTCTGGGAATGATTCTGGTGATTCCTGTGACCAGTCCGAAGAAAAGAGACGTAAAGAAGGCATCCCCTACATACGTATCCCTCTAACAAATATTATCAAGCCAACCTCTAAatccaaaacacaaacaatgaaGTCtgattatgaattaataaatggacTCCCTGAGAAAAGTGAAAATACAGATGATCCTGATGATTATACAATTGTGCAAAAAGAATTTTATGTCATGTTATTcaacaaagagaaaaatcatGCTGAATGGGTGTATGAAATACTGAACAAGCAAACTTTACTTCGGTTTCCTAGATTTCGATATAGATATAAAGATGACCAAAAGGATCCAGACtatgaagaagaaaagaatCAATGGGGCCAAAAAATGAGTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24227 lncRNA upstream 38648 2253829 ~ 2254655 (+) True LOC122341670
XR_006250483.1 lncRNA upstream 38832 2253835 ~ 2254471 (+) False LOC122341670
TU24157 lncRNA upstream 48371 2243357 ~ 2244932 (+) True G16239
TU24164 lncRNA upstream 50168 2192086 ~ 2243135 (+) True G16246
TU24111 lncRNA upstream 142818 2143869 ~ 2150485 (+) True G16218
TU24239 lncRNA downstream 822 2296867 ~ 2355930 (+) False G16310
TU24241 lncRNA downstream 822 2296867 ~ 2356071 (+) True G16310
TU24142 lncRNA downstream 18255 2314300 ~ 2374078 (+) True G16227
TU24270 lncRNA downstream 130363 2426408 ~ 2429562 (+) True G16327
TU24271 lncRNA downstream 130363 2426408 ~ 2434512 (+) False G16327
XM_043235186.1 mRNA upstream 22839 2267588 ~ 2270464 (+) True LOC122341669
XM_043235185.1 mRNA upstream 25795 2261610 ~ 2267508 (+) True LOC122341668
XM_043230556.1 mRNA upstream 127610 2160346 ~ 2165693 (+) True LOC122333054
XM_043235918.1 mRNA upstream 152482 2131218 ~ 2140821 (+) True si:ch211-106h11.3
XM_043226579.1 mRNA upstream 282872 2002679 ~ 2010431 (+) True rangap1a
XM_043235022.1 mRNA downstream 27655 2323700 ~ 2340093 (+) True LOC122341568
XM_043235064.1 mRNA downstream 45486 2341531 ~ 2349689 (+) True LOC122341598
XM_043235031.1 mRNA downstream 53730 2349775 ~ 2691512 (+) True LOC122341572
XM_043235020.1 mRNA downstream 61641 2357686 ~ 2370636 (+) True LOC122341566
XM_043235048.1 mRNA downstream 126026 2422071 ~ 2423550 (+) True junbb
TU24191 other upstream 127689 2160845 ~ 2165614 (+) False LOC122333054
TU24133 other upstream 178964 2112037 ~ 2114339 (+) True G16223
TU24128 other upstream 229519 2056681 ~ 2063784 (+) False G16222
XR_006250539.1 other downstream 268842 2564887 ~ 2564955 (+) True LOC122342193
TU24296 other downstream 272039 2568084 ~ 2568999 (+) True G16347
TU24318 other downstream 345167 2641212 ~ 2646750 (+) False sumo2b
TU24319 other downstream 345167 2641212 ~ 2646750 (+) False sumo2b
TU24591 other downstream 986945 3282990 ~ 3283656 (+) True G16530

Expression Profile