RNA id: XM_043231005.1


Basic Information

Item Value
RNA id XM_043231005.1
length 2717
RNA type mRNA
GC content 0.42
exon number 4
gene id cacng1b
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 26596279 ~ 26606578 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agagtgaaaactAGGGCACTATTATCTGGCCTCTTTTTCCAAGCAGAAGCAGAGATTTGTGGACAGTGAGCTGGAGTGAAGAGATAGCGGCTTGCCGTGTGACTTTTACATTTCCCTTAGTGCCTCAGAAGTAAACTAAAACAAGGTGTCCATTCAAGGGCAGAGACGCTTTCAAACTCATCTTCGGAGGCCACCATGCTGGAGGACAAGAAGACCAAGGTGAAGATCACCTTTCTGGTTATCCTGGTTGGCATCTCGTCCATGTTGGCGGCGGTGGTGACGGACCACTGGGCGGTGCTGAGTCCCAGGGTGGAGCGGCTCAACACCACCTGCGAAGCGGCCCACTTCGGACTCTGGAGGCTGTGTAAAAAGAGTATCTTCATTGTGGAGGAAGACCCTCAGGGTAAAGGCTGTGGCCCTATCAGCCTGCCAGGAGTCAAGAACTGCTCCTACTTCAAACACTTCACATCAGGGGAAGAGGCTGAAGTTTTTGAAGTGAAGACTCAGAAAGAGTACAACATCTCAGCTGCTGCCATCGCCATCTTCAGTTTGGCCTTCATGACCCTGGGCAGTCTCTGCCTCCTGGGGGCTTTTGGGAAGGGCAGAGACTACCTGTTGAGACCAGCTGGCATGTTCTTCGCTTTCGCAGGCCTGTGCACCGTCATCTCGGTGGAGATCATGAGGCAGTCGGTCAAGCGCATGATCGACAGCGACGAGACCATATGGATCGAGTACTACTATTCGTGGTCCTTCGCTTGCGCCTGCGCCGCCTtcaccctcctcttcctcagcgGCATCAGCCTCCTCATCATCTCCATGCCACACATGCCTAGAAACCCCTGGGAGACCTGCATGGACGCCGAGCCGGAGCCCATAGACTAGCGTGAGAGTAAGAGCGAAGCCTGTAGCCGAGCGAACGGTAATGATGCATTGCGTTTGTAGACGATGATAGTGATGCATTGATCTTTTTAACTAAGCACCGACAGAGACGTCGAATCGCTAAAAGGGTAGGTTATccaaaactagtttttttttctatttgtaccGTAGATCAATTGGAAGAAAGTCAGTCAAACAGGTTTAGAGTAAACGAGCGCATTCCCATTACGAAATATCTAACACTGATTTTGTATGGTATGTGAAACTTTTTATGTGCATTCATGCTTATATGCAATAGACGACAGCGTAGAATGTATATTTAGGGAGTTTACAATCTGTTATTTCTGAAACGGCGACCGTGAAACTATAAACTGTTGCTGTTATACGACTAGTTTCAGCAAATACAGATTCAATTTTAAAGTGAGGTGAATGTAATAACGTTACTAGTACAGGTTTATACTTATCAGGTAGTTTAAGCGGTTATAATCTTTACACACATGACTTGGACTTCCTTTTAGCGACTGAATCTCAGAGGTCCGCCTCGAGAAAGACTGTTAAAACCGTTTTGGTGTTCCTAATGCACTTCCTGTTGCTGTTTCGAGACTGTCGTTTAATTTAAAGAGAAGGGCATTTTTGTTCTCAACCGACTGTACGATCGAACCATTTTCACAAAAGGATTTAATAACCTGCATACAAAATGAGTCTACTTGAGTTCATCGACTGAAATCCACAGTCGCACGTATATTCGTAAACGGAGCACATTCAACGAGCTTATTCTGTTACTCGCACAGCTTTGTTATCCCGCGGCGCGCGCTTTTTTGGGCTTGTAGAAACACAGCAAACCAGGGTTTAACATTGCGCAGTGCCATCTGATATATTGATGGTTCactcaaaatttaaaaaaatatatatattccaaacCCGTACGTTTTTCGTTCATCTTTGGGAACacaattttagatatttttggtgaaatctgAGAGTTTTCTGACTCTccgtagacagcaacacaaatgACACGCTCAAGGCCCAGACGTCATTAAAATAGCCGTAGAGTGGTGCAACCGTGATGTTACGTAGCTACGAGAACACTTGGGTTCAAcgcaaacacaaatacatttatgcagCGATTTCTTCTTTTATGCGAGTAAATGAGAGTACCAGGATATAGGCGTCATTATTTTTGCCGCctaaaagtattctcatagctttacattacggttgaaccactgacgtCACTTGGACTATTTAAACGATGTCCTTAATATCTTTTTGGGCCTTGAACGCGTCTATGAAGAAAcggaaagctctcggatttcattacaaattatttttgttatgagcgtcttacgggtttggaacaacatgagggcgagtagTAGATgacaactttcatttttgggtgatctatccctttaagacgctgaaaacagctataaatGTTTGGGAGATTAATTAAACGGTTAAAAGCAGGCATTCTTTTATagacaaaagcatttttaagaaGACTTGTTAAAAGATGGAAGCTGAAGACACAATGTTTTTCTAAACCGTGGccaaataatgaacaaaattccaatctatgaataaaaaaatatatattttctgtatatttgttAAGTTCAgcagtacaaatatatatttgctttattgcTAATGgcaatagtttttgtttttggttgcaCTACTAACCATTTCCTAAACataagttaatatattatagCTCTAATAacgcttgattttttttaatatcccGATCAGGCGATCACAAACAAACCTCtttgttgcttattaaaatgacaaatgtccTGATTGATAATAAAAAGGTTTGATTTTCA

Function

GO: NA

KEGG:

id description
K04866 CACNG1; voltage-dependent calcium channel gamma-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35088 lncRNA upstream 98312 26492946 ~ 26497967 (+) True G23552
TU35079 lncRNA upstream 160431 26428219 ~ 26435848 (+) True G23550
TU35028 lncRNA upstream 404437 26179232 ~ 26191842 (+) False G23508
TU35027 lncRNA upstream 406354 26179232 ~ 26189925 (+) True G23508
TU34527 lncRNA upstream 462449 26131602 ~ 26133830 (+) True G23189
TU35137 lncRNA downstream 38693 26645271 ~ 26646452 (+) True G23594
TU35237 lncRNA downstream 116234 26722812 ~ 26723027 (+) True G23659
TU35242 lncRNA downstream 122230 26728808 ~ 26729365 (+) True G23664
TU35302 lncRNA downstream 192233 26798811 ~ 26801395 (+) True srsf2b
TU35307 lncRNA downstream 218530 26825108 ~ 26834654 (+) False G23692
XM_043225570.1 mRNA upstream 6115 26578230 ~ 26590164 (+) True cacng4b
XM_043235545.1 mRNA upstream 23535 26568135 ~ 26572744 (+) True aimp2
XM_043235548.1 mRNA upstream 23535 26568135 ~ 26572744 (+) False aimp2
XM_043235546.1 mRNA upstream 23535 26568626 ~ 26572744 (+) False aimp2
XM_043235325.1 mRNA upstream 36733 26554901 ~ 26559546 (+) True pvalb8
XM_043235369.1 mRNA downstream 44251 26650829 ~ 26705731 (+) True pitpnc1a
XM_043235368.1 mRNA downstream 54675 26661253 ~ 26705731 (+) False pitpnc1a
XM_043234905.1 mRNA downstream 100222 26706800 ~ 26710818 (+) True dxo
XM_043229023.1 mRNA downstream 111676 26718254 ~ 26722466 (+) True anks4b
XM_043231857.1 mRNA downstream 152485 26759063 ~ 26772903 (+) True ubald2
TU34502 other upstream 687103 25907165 ~ 25909176 (+) False LOC122341383
TU34498 other upstream 689944 25894657 ~ 25906335 (+) False LOC122341383
TU34460 other upstream 745703 25839626 ~ 25850576 (+) False G23146
XR_006250491.1 other downstream 54662 26661240 ~ 26704452 (+) False pitpnc1a
TU35285 other downstream 152516 26759094 ~ 26772903 (+) False ubald2
TU35297 other downstream 192233 26798811 ~ 26801395 (+) False srsf2b
TU35298 other downstream 192233 26798811 ~ 26801395 (+) False srsf2b
TU35299 other downstream 192233 26798811 ~ 26801395 (+) False srsf2b

Expression Profile