RNA id: XM_043231035.1


Basic Information

Item Value
RNA id XM_043231035.1
length 4135
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC122333434
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 23128784 ~ 23135038 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGCATTCTTACAGGCTAATCCCCGCTAGCAAACACACACCATGCCTTTGACAGGTTATGGTGTCCTTTTTCTTCAAACTGTTACAGATTTAAGACTCGCCAGTCACTGCTAAAACTTTTAGGATGCCTTCCCCATACGTTTTACTCGTTTTCAAGACGCACTCGTGATGTTGACACGCCAGAGTGTCTTTAACTTTAATCGAAATGCCACGAGCGTGAAAGTCATCAGGCTGTCACGGATCTGCGCGTGGCCATGACCGGCATGATAAAGAACCGGACGGCTTTTCGGCGAGGAAAACGGCTAATGGGCGAGAGATGAGGAGAAAAACAATAGCAAAGCGCATCCTGTACAATGGATACGAGGAAACCCTCGAAGAAACCGGCGCGAGGGCGAAGCACGTCCTCGGTGTATGTCAGCGTCAAGCTTTTGTCGCGAACGTGTCATTGTTTTGCACTCCCTTGGTTTAATTATGTGACTGTCTTTCAGCAACAGCCGGCGAAGAGGAGAAAATGGAGAGAACTACGTGGAGAGGACATCTCGTCTCGCAATGCTGACTATATTAAGTTCAAAACAAAGGCTTTTGAGGTTGACAAGCCCTTTGGAGATGCGACAAGGGGTGCAGATTTTACTATGGAGGTGCTCGGAAGCCTCCAATCACGTCCAAGGGCGGAGCTTATCGCCATGGTGTTGAGTATGCAGAGGGAGATGGACGGCCTCCGAGAGCAAATCAGAAGCCTCACAGcttGTGGGAAGTTGGCTCAGACGCTTGAAGAGCTGATCGAGAAGAGTGATAGATGGCTGTGCGGCACCCACGATGCTGCAACTCCCAGCATTCCAAGGGAGCTGGAGAGAAGCAGGCCACCCAGTCACATTACTCCTCCAAGGGTGCCTAGCGCAAGAACAGCTGAATATGCAAGTTCAGAGCAGCAGGGGTGTGGTCAGTATGAGGTCACACAAACAATGCCTCAACGGAATGGAACGCTTCCCGAACAAAAAGTTATTACTGCTGATCTGCTGGAGCGCTGCAACACAGGGACCACGGCTCAGAAACTCACCAATGACCTTCTGCGCAGCCTCTACGACAGAGACTGTCTGGCCTCTCACTCAATCTCAGGCATCGTCAACAGCAAGCGAGGGATGCCTAAGCCAGCTCTTCCGGCGCATGAGATCCAGGCCATTCTGAGGACAGTGCAGCGGTTCTTCCCCGGAAAGACTGATTCGGAAATAAAGGGCTACATACGACAGAAGCTTCAGAATGAGGCCAAGAGGCTTCGGAAAAGGCCACACCCAGCTGATGATCCAGTGGTGGGCTCATTCGAGAAGGAGAGAGCATCGTTTGAGTGCTGACTTTCATTGGACGTCCCCAGTGAACATATTTAGTTAAAGAATTTAAACTACACGAACCTAAAACTTTAAAGtaaccttaaagggatagttcagaaGAAGTTatggtgagtaaattatgactcATTTTTGAGTAAGGCTGCACggttcatcaaaataaaaccaaagcCGGTTTAGTGCGATTATCAAAAAGAGAAAGCTGAAGTTGAATTTAATAAGCAGTTTCAGTTTCAGAGCGAAGCGCAGCGCTGAGTTCATTTACACAGGAGCAACTCTAGATCCAGTGTTTTCAGCAACTCAGTTTGCTTTAATGCCCTTATAAACAGACTGTTGTCTGCAAGATAATCTCTTAAAGGCTTCCTGCAGTTTTCTAACAAAATTAAACCTGGATggcttaacattaaaaaaaaaaaaatgcagcagcaaaaaatattagtattcaaattttacagttgtactataatatagaaaatgttcttaaatacagtttaaaaacaaaaaaattattttgcatttaaatagttattattttagtattttatgtaaaaatactaatagttattattattattagaattaaattttGGGCCAAATTGTGCTGCCCAACCAACAAGCGCAGCAAACCTGGagccttttttaaattaattttattattattattataattattattttttaaatgcaataaatgcccCCCACACACAAATCGTGCAGCcctgtttttgagtgaactatccttttaagttCGTATTTGCAAGGTTTTTTCCAAGCTGTAGAGCACATGACaaactatgtgtgtgtatgatttttATCATGTTGATTACACAAAACTGTGACTTCTTATTGATTTGAAATTGCAAAACGAACCCCGGAAGTCACAGTCAGGAGTAGATGGAAAACAGTAGCTTCGACGTACCTCCAGCATCACTGCCAGACGTTATCACACACTGTTTGTCGTGCGCTAAAACTTCGAAACCAAGTAGACTAAAGCTGTGAACACAGTGGCAGATGGTTAAGCATCGCTCTCCTGTAAAATGACATGGATGTCACTTGGTAGGGGGGTTACATCGTGATTGATGTAGTTCAGACTTGTGGTATTTTAGTTGATCACATGTTGAAAGTGTGCCCCCGCGTGTAATGTGAATAGATTTCGTGTGTGATGTGAAATACGCACGTGCCTCTTATATTGGACTCCTCACTGTGGCCTTATCAGTCAGAAAACGCAGCAGTACAGTTCTCATTTCCAAACCACTGTGATTAAATCCATTAAAAAGGACTTGTCTGTCTTGAACGCGTggcgtctttttttttgtcttgatttcAGATTCTGTTCGCAGGAGCTTATTGAATCGGCTGCACGAAAACGCGCACGTTTTTTACCTTTCCAGACAGAAGCACGCGGGCTCCTGGAGGCCAACGGCTGTGTGAGTAAATTAACCCCGCACTCACCAGCTGTATCACCGCACCCACCCCtttctggggaaaaaaacacatcaccGAACACATGGCACAAAGGACGGCGTGGGAACTGCATATGGTACATAATCAATAGGCCTTATCGCGCACACACAACCCGAACCGCAGACACACCTCAGTCGGGCTAGACCATTATCAGTGATACATGACCCTAATCCATTTATGTGTCAATGATACAACAGATTGGGGTTGGAGAAAACAGCGGCGTCGCGCTGGGGACCGTATCTTCCGCGATCCAGCCGTTATACAGACTCTGCCTGTAATTCCACTCATCAGATCTGCTAACAGCAAATCAATGGGCTTCTTTTGTTTCTGCAGGTTCAGACATCCTCATTGTGTCGCGTTatcgggtgtgtgtgtgtgtgtgtgtgtgcgtaaacCGCTTCGCGTTCGCCACCGAGATGGAGGCCTCCCCcagaatgttttcttttatctaatGCGAGGACGTGAACGTTGCGAGGAAGCGAATATTTCAAACGGCGCTGCGGCGCGGCCATTTGATCTCTGAAGGCTCCGCTTGATTTACGAATACGAGAAGCGCTTCAGCTGCACTGGCCAATATTTTCGCTGGGCAGTCGAAGACGACTTCAAAGTTGAAAGTCGGAGCGTTAAGCGCTCCTCCGGGCTCGCATCCTTCTCTGAAGGGGCCAACGCAAACACGCCTCGGCCCTCGGCGGGGCTCTCGCTGAACCTGGGTAAAAGCAGCAGGGAGGACAACCGAAATTAAACGTTTGCAGAACGCAGGAGAAACGCCTCCTCCTGTTGGCCCATGCGTTTCCCGCAGAGCTGTAATATGTCATCTGGGCAGCCACTTCGGTGGAGGACATATCCCACAATGCCATGCAAGGCAGGGTGCCACGGTACCCGTTGCGGCTCACTAACACGCCTCCACGTGCCATCTTAACTTTTCATTTGTCTTCTTCTACCTGTCAAAGGGAAGAAACAATTGTTCGGAGGGAACGACGTTTCCCGACGGAATCCTGATCTATCAGTTCTGTACTTCTGTGCCGTTAAATGACATTGCACTTTCATTCTGTGCTCCACAAGCAGAAACAGGCTAATTCAATCATCTTAATCCCagtcataaaatatattgttcttTCAGGGATTAGACTCTGCAGTTAAGGACTACAAGGACTTTACACGCTCTAATTTTGTATCTTTTGTCTGTATAGTACAACTGCAAACCacaatttttctttgttttgttttgtgtggaTCTTTTGTATGTAAAATGTGGAAGTGCAGcctgatgatttttttatttttatcactgTTTTGTAGGtttctttgcttttgtttggATCTTTTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33504 lncRNA upstream 11944 23114278 ~ 23116840 (+) True G22584
TU33498 lncRNA upstream 33362 23089473 ~ 23095422 (+) True G22581
TU33443 lncRNA upstream 100279 22940247 ~ 23028505 (+) True G22554
TU33452 lncRNA upstream 222089 22905742 ~ 22906695 (+) False LOC122341356
TU33447 lncRNA upstream 225243 22899333 ~ 22903541 (+) False LOC122341356
TU33611 lncRNA downstream 203376 23338414 ~ 23343588 (+) False dnal4a
TU33652 lncRNA downstream 208926 23343964 ~ 23348567 (+) False LOC122341898
XR_006250502.1 lncRNA downstream 261463 23396501 ~ 23400922 (+) True LOC122341922
XR_006250500.1 lncRNA downstream 277775 23412813 ~ 23414909 (+) True LOC122341920
TU33712 lncRNA downstream 294966 23430004 ~ 23431766 (+) False zmp:0000000912
XM_043235459.1 mRNA upstream 14686 23103757 ~ 23114098 (+) True copz2
XM_043235458.1 mRNA upstream 37848 23084146 ~ 23090936 (+) True cbx1a
XM_043235957.1 mRNA upstream 209823 22912566 ~ 22918961 (+) True LOC122342153
XM_043234705.1 mRNA upstream 220649 22899342 ~ 22908135 (+) True LOC122341356
XM_043235442.1 mRNA upstream 345689 22779834 ~ 22783095 (+) True hoxb1a
XM_043235616.1 mRNA downstream 23181 23158219 ~ 23163710 (+) True prr15la
XM_043235607.1 mRNA downstream 29324 23164362 ~ 23167244 (+) True atf4b
XM_043235598.1 mRNA downstream 36566 23171604 ~ 23181066 (+) True LOC122341905
XM_043235597.1 mRNA downstream 49810 23184848 ~ 23192889 (+) True LOC122341904
XM_043235614.1 mRNA downstream 57992 23193030 ~ 23197094 (+) True tmem150b
TU33451 other upstream 222089 22905377 ~ 22906695 (+) False LOC122341356
TU33136 other upstream 581576 22546158 ~ 22547208 (+) True G22329
TU33161 other upstream 598724 22528989 ~ 22530060 (+) True G22344
XR_006248300.1 other upstream 1102873 21976509 ~ 22025911 (+) False wnk4b
TU33098 other upstream 1152119 21975252 ~ 21976665 (+) True G22301
TU33550 other downstream 23211 23158249 ~ 23163716 (+) False prr15la
XR_006250499.1 other downstream 268403 23403441 ~ 23408814 (+) True LOC122341907
unassigned_transcript_294 other downstream 701061 23836099 ~ 23836180 (+) True trnas-aga_1
TU34051 other downstream 915201 24050239 ~ 24051863 (+) False LOC122342055
TU34052 other downstream 915700 24050738 ~ 24051863 (+) False LOC122342055

Expression Profile