RNA id: XM_043231314.1


Basic Information

Item Value
RNA id XM_043231314.1
length 5879
RNA type mRNA
GC content 0.45
exon number 31
gene id abcc6b.2
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 14273386 ~ 14292943 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTAAATCTTCCACCCACCTGGCAGGCCAGAGCTCATAAACAGGACAGTTACACAAACCTGGTGTCAGACTGTTGCTTTGACAAGACCGAAGTCAGGACACGGGAGGCTggcttacaaaaaaaaaggggcTGAAACATACACTCAGGCACAACTACTGTCAAACTCACTTACACTGCCAACAGAAACTACATAGAAAGGAGACTGGGACGCTGCTGAGTTCAGGGAGCAGGGATTTACTACAGCAAGGAGAGAAAAACCTGGATGGACACCCTCTGCAGTCTCAGTGGCCTGGACCCTCTCTGGGACTGGAATGTCACATGGTACACAGCACACCCAGACCTGACCCAGTGCTTCCAGCACACAGTACTGGTGTGGTTCCCCTGCTTCTATCTCTGGGTTTGTGCCCCTTTCTACTGCTTGTACCTCAGATTCTATGACAATGGACGCATATCTTTATCCAGCCTCTGCTGTGCCAAGACGGGTTTGGGTCTCTGTCTGGCCTCCTTTGGTTTGCTGGAGATGGTCTATCTGCTGTTGGACAAGAGCAGAGACATAGAGCATCACATAGTCTTTCTCCTGAGCCCTATAATTCGCAGCCTTACCATGATACTGGCAGTATTGGTGATCCACTTGGAAAGGATGAGGGGCTTTCGTtcctccatctttcttttcCTGTTTTGGACGCTGGCCGTGATCTGCTCACTGGTGCCTCTCAGAGCCAACATACAAGCCATCATGGATGAGGGTTTCTCTGCAGATGCGATGAGATTCGTGGCATTTTTCACATTCTTCTCTCTCCAGTTGgctcagctcatcctcagctgtTTCGCCGATCAGCACCCAGCGACTTTCAAACCTGTATATGTAAAGAACCCTTGTCCAGTTGAGGATGCTTCATTCCTTTCAAAAGTATTGTTCTGGTGGTACGGCAGTTTGGTGGTAAAGGGCTACCGTTCACCTTTACAAGCTGAAGATCTCTGGTCTCTACGAGAAGAGGACACTTCTgaaaaaatcatttgtgatctGGAGAAAGAGTGGGCCAAGCAGTGGGCCAAAATGCAACAGCAAGAGTGTGCTCTGAATGGAGCGCAAGCTCTTGGTTATAAACTGAGTGAGCAGACACAGCTGCTTAGAAAACTTCATAAAGAACAAAGCTCGGGCTTCTGTCTGCTCCGGACCCTAGCCAAAAATTTTGGCCCTTACTTTCTGACTGGAACTCTCTGTCTGGTCATTCAAGATGCCTTCATGTTCTCCATACCACAAGTGTTAAGtcTACTGCTTGGCTTTGTGAGAGATGAAGACGCCCCCTTGTGGAAGGGTTACCTCTTTGCCTTCTTGATGTTCCTGTTGTCTTGTCTGCAGTCCCTGTTCAACCATCAGTACATGTATACGTGCTTCACAGTAGGCATGAGGGTTAAAACTGCAGTTATGGGCCTAGTGTACAGGAAGTCTCTGGTCATCAGCAGCGCGGCCCGCAGAACGTGTACAGTTGGAGAGATAGTGAATTTGGTTTCAGCTGACACCCAGAAACTCATGGATTTTGTGGTGTACTTCAACGCAGTGTGGTTGGCCCCGATTGAAATCGCCTTGTGTCTTTTCTTCCTCTGGCAGCGCCTCGGTCCATCTGCATTGGCTGGTATCGCCACTGTAATACTCATCTTCCCTTTGAATGGGTTCATTGCCAAAATGAGAAGCAAACTGCAGGAAGTCCAGATGAAGTACATGGACGGACGAATAAAGCTTATGAACGAGATCTTGAGCGGAATAAAGATCCTGAAGTTTTATGCCTGGGAGAATGCCTTCAGAGAACGTGTTCTTGGCTATAGGGAAAAAGAGCTTAATGCTCTGAAGAAGTCTCAGATCCTATACTCCATATCAATTGCCTCCTTCAACTCCTCAACTTTTTTGATTGCATTTGCCATGTTCGGGGTGTATGTGCTGATTGATGACAAGCATGTTCTGGATGCTCAGAAGGTCTTTGTGTCCATGGCTCTTATCAATATTCTCAAAGCTCCACTCAGTCAGCTGCCCTTTGCAATGAGCACTACCATGCAGGCCGTGGTTTCTCTCAAACGCCTCGGGAAGTTTCTCTGTCAAGACGAGCTGAAACTGGATAGTGTGGACAGAGCTCCCTACAATCCTGACATTGATGGTGTTGTTATTGACAACGGCTCTTTCAGCTGGTCTAAAGATAGCACACCCTGTCTCAAAAGGATCAATGTCAAAGTACAGCAGGGTTCACTGGTGGCTGTGGTAGGTCACGTGGGCAGTGGAAAATCCTCTCTTCTGTCTGCGATGTTGGgagaaatggaaaagaaaagtgGCCATGTCAGAGTATCGGGCTCTGTGGCTTACGTGCCTCAGCAAGCATGGATCCAGAACGCCACTCtcaaaagcaacattttgtTTGGACGTGAGAGAAAAGACTGCTGGTACCAGAAAGTGTTAGAGGCCTGTGCTCTTCTACCAGACCTGGAGATCCTACCTGCAAGAGATGCCACAGAGATTGGGGAGAAGGGTTTGAATTTGTCCGGGGGTCAGAAACAGAGAGTGAGTCTGGCACGTGCAGTATACAGGAAGGCTGATGTCTACCTGCTGGATGATCCCTTGTCAGCTGTGGATGCACATGTGGGTCAGCACATCTTTGAAAAAGTCATTGGACCTAATGGCGTTCTTAAAAATAAGACACGTATTCTGGTGACCCATGGGCTGAGCTTCCTACCCCAGGCTGACCTGATTGTGGTGATGGAGGATGGAGAAATCACAGAGATGGGCTCTTACACTGAGCTTTTAAGCAGGAAGAATGCCTTTGCAGACTTTGTTAAAGCTTTTTCTGTTAGCGAACGCAAGGAAAGTGCTACCCATAAAGgGACCAGAAAATCACTATCTCGTCTCAGCATGACAGATTTCTCTATTGACCTCTCCCAGGAGCAACTCATCAGTGGGGACATGGGAAGTGCCAGTATACAAACCATGGAGGCCATATCTGACACAAAACAGGAGCAGGATCAAGAGGAAGTTGGGAAACTCACCCAGGCTGACAAAGCTCATACAGGCCGAGTGAAACTGGAGATGTATGTGGAGTACTTCAGGACCATCGGCTTGGCCTTCATCATCCCCATCATCTTTCTATACGCGTTCCAGCAAGCTGCATCATTGGTGTACAACTACTGGCTAAGCCTGTGGGCTGATGACCCGGTTGTTAATGGAACACAGATTGATACAGATCTGAAACTTGGTGTTTTTGGTGCTCTCGGCTTTGCACAAGGAATTGCATTTTTTAGCACTACTGTAGCCATATCACTTGGAGGAATAATTGCATCTCGGCATCTTCATTTGGACCTTCTCAACAATGTACTTCACTCTCCTATGTCATTCTTTGAGAGTACACCCAGTGGTAACCTTCTCAATCGCTTCTCTAAAGAGATAGACGCCATCGACTGCATGATCCCTGATGGGCTAAAGATGATGCTGGGCTATATGTTCAAACTTCTGGAGGTTTGCATTATCGTGCTGATGGCGACTCCTTTTGCAGGAGTGATCATATTGCCACTGACTCTGCTCTATGCCTTTATCCAGAGTTTCTATGTGGCCACATCCTGCCAGTTGCGTAGACTAGAGTCGGTGAGTCGATCACCCATCTATACTCATTTCAATGAGACAGTCCAAGGAGCTGGAGTAATTCGGGCCTTTGGAGAACAGTCTAGGTTTATCCTGTTGGCTAACGGTCAAGTGGACCACAATCAAACATCCTATTTCCCAAGATTTGTGGCAACCAGGTGGCTGGCAGTAAATCTAGAGTTCCTGGGTAACTTACTGGTCCTTTCTGCATCTATTCTCTCTGTTATGGGAAGGGCAACTTTAAGCCCTGGAATTGTGGGACTGGCTGTGTCGCATTCTCTTCAGGTTACTGGGATCTTGAGCTGGATTGTAAGGGCATGGACAGATGTAGAAAATAACATTGTGTCTGTTGAGCGAGTGAAGGAATACGCAGAAACAGCAAAAGAGGCACCATGGGCAATCGAGGACAGTTCACTCCCATTAGACTGGCCCAGATCCGGATCTATTGGATTCCAGAAATATGGACTTCAGTACCGCAGGGGTCTTGACTGGGCCTTAAAAGAAATTTCCCTCAGTgttaatgagagagaaaaaGTTGGAATTGTTGGAAGAACAGGGGCAGGAAAATCATCTCTTGCTCTCGGAATTTTCCGGATCCTTGAGGCGGCAAAAGGAAAGATTTTTATAGATGGGATAAATATTGCAGAGATTGGACTGCATGAACTGAGGTCTCGTATCACCATCATCCCACAGGATCCAGTACTGTTCTCTGGTTCCTTGCGTATGAATCTAGACCCCTTTGATGGCTACACTGACGAGGAGGTCTGGAGAGCTCTGGAACTCGCACATCTCAAGAACTTTGTGTCTGGCCTGCCTGACAAACTCAACCATGAGTGTTCAGAAGGAGGAGAGAATCTCAGTTTGGGTCAGCGGCAGCTGGTTTGCCTGGCTCGAGCTCTCCTGAGGAAGACCAAGATTCTGGTTTTGGATGAAGCCACTGCAGCTGTAGACCTGGAGACAGACAATTTGATACAGTCTACTATCAGAACTCAGTTTGAGGACTGCACTGTTCTGACCATCGCACATCGTCTCAACACCATCATGGACTACACTAgAGTGATTGTGATGGACAGAGGGCACATCACAGAAATGGACTCTCCAAATAATTTGATTTCTCAGTGTGGTCAGTTCTATCGAATGTGCCAGGAGGCTGGGCTAGTTTGAACATTCACTGCCAGAGGAACCATCAATGACAAAATCATCTCTTCACTCAGGAGAGACTATAAAAATGGTGCAAAAATCTCACAAACGCACCTGCTCAGACTACCTGAAATGTTTCCTCACAGAACTTACTAAAGGGCATATCTTGCCTTCTCTAACGAGAGAATCACAAAGCTCAGGGTGAAGAGGTTTTGCCAGTAATAGCTGTTCAGTGGCTGGTTGCAACAGTCATCTAATTTTTCTTCTTCAAGACTGTTCATATGTTTTTAGATTCAGTTATGAAAAGGTAGACTGGTTTTACTTGTATTGGAAAAGTAAGACTGATATCCCCTCTGCAATTTCTAGTTGGTCAAACTAGTAATAAGACATGGTATTAACATGGTGGCTAAAGTTATGCAACTGGCCCCGGGTGTGCACGTTTTCTCCAGTATTACAGACATGGTGTGCTTCAGCATTCTCCTGTTGATTCTTTAACTGAGTTGTGAGGCGCTAAAACAGGCTGATCCCTTTATGTCGACAACAGTCTCATCGCAGAATACAAAGACTTGAATAATGTTATCTTGCCATAGAAGTGTTCAGTAGGTTAATATAATGCCCACTTCAGATAGTCAGACCATGCACAGCCATGTTCAACACCTCTCACTGCTGTCAAAAGTGAACATTTGTGgaattttgtttgttgttgtagaTCTTGGCATAACACAGCTAAAGAATTAGGCATAGTTATACTTGAACCTTTTCAGGTTATTATAagaatttattaattactatatCAGCACATTAAACCTTAAATTCCCATAATGGTGAAAGATGCATCTATATTTATGAAGTGAGAAAGATCTGTTcatgttaaaaacaatgcaacacCCACTCATCCTTACTCTGATTTcgtttgtgtgtctctgtattaatactattattgttttctttatctaAAACTTtaagtttgtatttatgtattttgtactgtataataagtgtatttttatatatttaaaacatttccatgCACACTACATGAGTGACTATCaaacttgaaaatgttttttttcctgaacagcttcagtaaaataaatgtttgtagtAGTGATCAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29920 lncRNA downstream 51589 14220085 ~ 14221797 (-) True G20095
TU29913 lncRNA downstream 69081 14202931 ~ 14204305 (-) False si:dkeyp-72e1.6
TU29815 lncRNA downstream 212894 14059581 ~ 14060492 (-) True G20029
XR_006250534.1 lncRNA downstream 343109 13917700 ~ 13930277 (-) True LOC122342150
TU29698 lncRNA downstream 374454 13897631 ~ 13898932 (-) True G19947
TU30071 lncRNA upstream 92418 14385361 ~ 14388398 (-) True G20202
TU30083 lncRNA upstream 140762 14433705 ~ 14459554 (-) True G20212
TU30087 lncRNA upstream 154392 14447335 ~ 14457910 (-) False G20212
TU30097 lncRNA upstream 156532 14449475 ~ 14451028 (-) True G20217
TU30125 lncRNA upstream 310251 14603194 ~ 14604214 (-) True G20231
XM_043234910.1 mRNA downstream 20437 14239107 ~ 14252949 (-) True myh11b
XM_043234911.1 mRNA downstream 20437 14239938 ~ 14252949 (-) False myh11b
XM_043234927.1 mRNA downstream 65155 14206354 ~ 14208231 (-) True mpv17l
XM_043234929.1 mRNA downstream 69036 14202930 ~ 14204350 (-) True si:dkeyp-72e1.6
XM_043234924.1 mRNA downstream 71238 14195778 ~ 14202148 (-) True rrn3
XM_043235867.1 mRNA upstream 10207 14303150 ~ 14309441 (-) True ramp2
XM_043235866.1 mRNA upstream 10207 14303150 ~ 14309422 (-) False ramp2
XM_043235868.1 mRNA upstream 10207 14303150 ~ 14305607 (-) False ramp2
XM_043235861.1 mRNA upstream 35263 14328206 ~ 14355988 (-) True cntnap1
XM_043234670.1 mRNA upstream 112031 14404974 ~ 14415597 (-) True tubg1
TU29676 other downstream 467408 13805368 ~ 13805978 (-) True G19933
unassigned_transcript_285 other downstream 1172742 13097129 ~ 13100644 (-) True LOC122341774
unassigned_transcript_284 other downstream 1180540 13092210 ~ 13092846 (-) True LOC122341304
unassigned_transcript_283 other downstream 1186119 13086375 ~ 13087267 (-) True LOC122332140
unassigned_transcript_282 other downstream 1188420 13084026 ~ 13084966 (-) True LOC122341303
TU30091 other upstream 142207 14435150 ~ 14439541 (-) False mlx
TU30092 other upstream 143272 14436215 ~ 14437040 (-) False mlx
TU30093 other upstream 143272 14436215 ~ 14439541 (-) True mlx
TU30094 other upstream 143272 14436215 ~ 14439541 (-) False mlx
TU30272 other upstream 827863 15120806 ~ 15179228 (-) False plcd3a

Expression Profile