RNA id: XM_043231377.1


Basic Information

Item Value
RNA id XM_043231377.1
length 3807
RNA type mRNA
GC content 0.47
exon number 30
gene id mybpc2a
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 10978149 ~ 11006634 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCTTGCCAAGGGAGGAGGGaataaaagggatgaaagatgAGTAAAGTGTGGGAGAAAGAAAAGTCAGGGTGACCGACATATGACGAACCACCATGCCTGAACCGAAGAAGCCAGGTGCCAAGGGAGAGAAGGTGGAAGCTCCACCTGCTGataAGCCTGCCGAAGAATTGCCTGAGGATGAACATGTCCCAGGAGAAGAGCCTCAGCTGTCTCAGATAAGTGGGCTGTTTGTGGAGAAGCCTCAGACTGTCACTGCTGTTAAAGggaaaaatatcacatttgtgGCTAAGGTGGACTCCTCTCAGATGCTGAGGAAGCCAACTATGAAGTGGCTGAAGGGGAAATGGATGGATCTGGGCAGCAAGGCTGGAAAACACCTGCAGTTCAAGGAAACCTACGACAGGAACACCAAGATATACACCTATGAGATGACCATTGTTAAGGTTGTGGATGGAGATGCAGGAGGTTATCGTTGTGAGGTCACTTCCAAAGACAAGTGTGACAGCTGCACGTTTGACATCTCTGTCGAAGCTGCTGAAGAGACacagcaaacaaacattttggagGCGTTCAAACGATCGGGAGATGCAGGAGAGGATGCAGGTGATCTGGACTTCAGTGGTTTACTCAAGAAAAGAGAGAGGAAgcagaaggaggagcctgagaTCGATGTGGATGTGTGGGAGATCCTGAAAAATGCCAAGCCATGTGACTATGAGAAGATTGCCTTTGAGTACGGCATCACTGATCTCAGGGGCATGCTCAAAAGACTCAAGAAGATGAAAAAGGTGGAGCCTAAAAAGAGCGATGCCTTCTTAAAGAAGTTGGATCCTGCTTACTCTGtggagaaaggaaagaaaatacaGCTTACTGTGGAGCTGGCTGACCCCAATGCTCAAGTCAAATGGCTGAAAAATGGACAGGAGATCAAACCTTCAGCTAAATATATCTTTGAGAGTGTGGGTGGTATCCGCAAGCTCACTATTAACAAGTGCACCCTCGCTGATGATGCCGCGTATGAGTGTGTGGTTGGAGAGGAGAAGAGTTTCACTGAGGTCTTTGTCCAAGAACCACCTGTCACTATCACTAAGATGTTGGATGATGTCCATGTGGTGGTTGGGGAGAAGGTGGAGTTTGAGGTTGAAGTGTCTGAGGAAGGAGCCAATGTGAAATGGATGAAGGATGGAGTGGAACTGAGCCGAGATGGAAAGTATCGCTTTAAGAAAGATGGGACAAAGCACTGGCTCATCATCAATGAGGCAACCACAGAGGACATTGGAACATACTATGTGTACACCAGTGGGGGGGAGTCCAAGGGAGAGCTGGAAGTGGAAGAGAAGGAACTGGAGGTTTTGCAGAGTATAGCTGATCTGACACTGAAGGCAGCAGAACAGGCTGTTTTTAAGTGTGAAGTGTCAGATGAGAAAGTGACTGGCAAGTGGTTTAAAGATGGGGTGGAGGTCATTGCCAGCGACCGCATCAAAATGACACACATCGGCAGGACTCACAAACTGGTGATAGATGATGTGAAACCTGAAGATGCAGGAGATTACACCTTTGTACCAGATGGTTatgctctttctctttctgccaaACTCAACTTCTTGGAGATCAAGATTGATTATGTTCCTCGTCAAGAACCACCCAAAATTCACCTGGACACCACTGGCAGctttgtcaacaaaaacaccattatCGTTGTTGCAGGAAACAAGCTCCGGTTTGATGTTGACATTACAGGGGATCCCCCTCCCACTGTGTGCTGGAAAAAAGGAGATACAGAGATCTCTGAAGCTGAAGGGCGTGTGAGAGTGGAGACCAGGAAGAACCTGAGCTGCTTTGTTATTGAAGGGGCAGAGAGATCTGATGAGGGTCTCTATCATATCACTGTAACCAACCCGGCAGGAGAGGACAAGGCTGATGTCATGGTGAAAATTGTTGATGTACCCGATCCACCTGAGAATGTGAAATGCACTGGAGTGGGTGAGGACACTGCTTCTATCCAATGGGAACCACCCAAATTTGATGGTGGAGTTCCAGTAAAAGGTTACCTaatggagagaaagaagaaggGCTCTTCCAGATGGACAAAGCTGAACTTTGACATTTATGAGTCCACAACATATGAGGCTAAGAAGATGATTGAGGGGGTGTTATATGAGATGAGGGTGTTTGCTGTTAATGGTATTGGCATGTCCCAGCCCAGTGCCAACTCCAAACCCTTCATGCCCATTGcACCAACAAGTGAACCAACACGGCTGACAGTGGATGATATTACAGATGGTACCTGTGCTCTAAAATGGCTTCCCCCAGAGAGAATTGGAGCCGGTGGCATTGACGGGTATATCATTGAATATTGCATTGAGGGAGCCACTGAGTGGGTGCAGGCCAACGAGACCCCTGTTGAGAAGAATAGTTACAGGGTCAGAGGTCTGCCCGTTGGAGAGAAGATGCTGTTCAGGGTGACAGCTGTGAACATCGCTGGTCGTAGCCCTCCAGCTGTGTTGGCGCAAGCTGTCACGATTCGGGAGATTGTCGAGCGTCCTAAAATCCGCCTCCCTCGGCAGCTTAGGACTAAGTACATCGAACGAGTGGGTGAGAAGGTCAACCTTGTCATTCCCTTCCAGGGCAAACCGCGTCCGATGGTGACCTGGCTCAAGGATGGAGCACCTCTAGACACCGGGCTGGTGAATATCCGCACAAGTGAAGTGGACACTATCCTGTTCATTAGGCAGGCAGCCAGAGAGCACTCCGGCCTTTACACCCTTTCAGTGCAGATTGAGAACATGGAGGACAAAGTCAATCTTGAGATCCAGATTGTAGACAAGCCTGGGCCTCCAATAGCTGTCACTGTAACTGATGTTTGGGGCTTCAATGCTGCTTTGGAGTGGAAGCCTCCAAAAGATAATGGCAACTGTGAGATCAATGGCTACACCATCCAAAAGGCTGACTTGAAAACTAAGGACTGGTTCACGGTTCTTGAACACAATCGCAGACCTAGTTGTACCGTGTCTGATCTGGTAATGGGGAACGAGTACACCTTTCGTGTGTTCAGCGAGAACATCTGTGGCATGAGTGAGGATGCTGGCATCAGCAAAAACACAGCTGTCATCGCCAAAACAGgtcTTCAACAAAAACTGCAACCCTACAAGGAAAAAGATATGTGCGCCTCTCCCAAGTTCATAACGCCTCTCGTGGACAGGTCTGTAATCGCAGGTTACAGCGCTGCTATCAGCTGTGCTGTCCGTGGACACCCGAAACCAAAGATTATATGGATGAAAAATAAGATGATTATTGGCGAGGATCCAAAGTATCTCATGCAGAATAACCAGGGTGTGCTGACTTTAAACATCCGAAAGCCAAGCTTGTTTGATGGAGGGAAGTATACATGCAAAGCCATCAATGACCTGGGAGAAGATGAAGTGGAGTGCAAGCTGGAGGTTCGAGTTATAACAGAAAAGGAGGAAGCGAAGAAGTAAACAGCCATGAAGATACCCTAAAGATGGCTGTCAGATGGCATCCAGTGtcagaaaagcaataaaaaatagAATGATTTAGAGTTAAATTGTCATTGTGCTGTCTCTGTGTTTTTACCCAAAGTACTGTGGCGCTACCAGAAAATACCACACAGTGATATCCCTTGCTCATTCACCATGTTATTTACACGGTACTTAAAAAACCCCCACACCAAACAATTATAGTAATACAGCTACTGTATTGTGTGAGTATAATTGggctaatataatattttctctGACGGTATGTCAAGTTAAGAAGCTGGAAATAAAaacacctgaaaaataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28072 lncRNA upstream 7685 10932371 ~ 10970464 (+) True G18824
TU28101 lncRNA upstream 57278 10920360 ~ 10920871 (+) True G18847
TU28076 lncRNA upstream 149314 10827078 ~ 10828835 (+) True G18828
TU28062 lncRNA upstream 165363 10811824 ~ 10812786 (+) False G18817
XR_006248664.1 lncRNA downstream 5575 11012209 ~ 11018702 (+) True LOC122333718
TU28146 lncRNA downstream 14694 11021328 ~ 11096418 (+) True G18879
TU28166 lncRNA downstream 70410 11077044 ~ 11078732 (+) True G18894
TU28177 lncRNA downstream 102114 11108748 ~ 11110425 (+) True G18903
XR_006249203.1 lncRNA downstream 155244 11161878 ~ 11162645 (+) False LOC122336295
XM_043233932.1 mRNA upstream 23420 10948678 ~ 10954729 (+) True akt1s1
XM_043235139.1 mRNA upstream 92526 10874237 ~ 10885623 (+) True LOC122341641
XM_043229804.1 mRNA upstream 135642 10834587 ~ 10842507 (+) False kcna7
XM_043229794.1 mRNA upstream 135642 10835732 ~ 10842507 (+) False kcna7
XM_043233861.1 mRNA upstream 157202 10817895 ~ 10820947 (+) False ifi35
XM_043235291.1 mRNA downstream 272103 11278737 ~ 11281741 (+) True cldni
XM_043235878.1 mRNA downstream 298691 11305325 ~ 11308557 (+) True prf1.9
XM_043235879.1 mRNA downstream 302048 11308682 ~ 11313369 (+) True prf1.1
XM_043228831.1 mRNA downstream 327107 11333741 ~ 11335780 (+) False LOC122331261
XM_043228836.1 mRNA downstream 327108 11333742 ~ 11335780 (+) False LOC122331261
TU28036 other upstream 196296 10752759 ~ 10781853 (+) False kcna7
TU28033 other upstream 196296 10778806 ~ 10781853 (+) False kcna7
TU27725 other upstream 943682 10025818 ~ 10034467 (+) True G18574
TU27625 other upstream 1178394 9798815 ~ 9799755 (+) True hbbe1.3
TU27611 other upstream 1228269 9739796 ~ 9749880 (+) True G18491
XR_006250543.1 other downstream 155720 11162354 ~ 11162443 (+) True LOC122342197
TU28257 other downstream 327125 11333759 ~ 11335825 (+) True LOC122331261
TU28236 other downstream 362259 11368893 ~ 11369752 (+) True G18949
XR_006249731.1 other downstream 766567 11773201 ~ 11833924 (+) True kcnc3a
XR_006249728.1 other downstream 766567 11773201 ~ 11833924 (+) False kcnc3a

Expression Profile