RNA id: XM_043231473.1


Basic Information

Item Value
RNA id XM_043231473.1
length 4745
RNA type mRNA
GC content 0.47
exon number 24
gene id clec16a
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 18443371 ~ 18487548 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGTTTTCATGTGAGGATTCTGGGCCTTCACTGCGGCGGATATGGATCCATTCGCCTAGCAAATTGCGTTAAAACGTACATATTGCAAAACATAACAACAGAAAAATGTTCGGCCGTTCAAGGAGCTGGGTCGGAGGGCAGGGGAAGTCCAAAAACATTCATTCTTTGGACCATTTGAAgtaCATGTACCATGTCCTAACAAAGAACACAACAGTTACTGATCACAACAGAAATCTGCTGGTGGAAACCATCCGCTCCATTACTGAGATTCTCATCTGGGGTGATCAAAATGACAGCTCTGTCTTTGActTCTTTTTGGAAAAgaacatgtttgcatttttccTCAACATACTACGGCAGAAATCTGGGCgctatgtgtgtgttcagcttCTGCAGACGCTCAACATCCTCTTTGAAAACATCAGTCATGAGACTTCTCTTTATTATTTGCTGTCAAATAATCATGTTAATTCCATCATTGTGCACAAATTCGACTTCTCTGATGAAGAAATTATGGCCTACTATATCTCTTTTTTGAAAACGTTGTCTCTGAAACTCAACAACCACACAGTGCACTTCTTCTACAACGAGCACACTAATGATTTTGCCCTGTACACGGAGGCCATTAAGTTTTTCAACCACCCAGAGAGCATGGTCAGGATCGCGGTCAGGACTATCACACTCAATGTGTACAAAGTGTCATTGGACAACCAGCACATGCTACACTACATCCGGGACAAAACAGCTGTGCCGTACTTCTCCAATTTGGTCTGGTTCATAGGCAGCCATGTCATCGAGCTGGACAAACATAAAAACAGAGGAAAACTCAGCGATCTAGTAGCTGAGCACCTGGACCATCTTCACTATCTGAACGACATCCTCATCATCAACTGCGAGTTTCTCAATGACGTGCTGACCGACCACCTACTCAACCGCCTCTTCCTTCCCCTGTACGTGTACTCTCTGGTCAGTCAAGAGCAGTCTGAAGAGCGCAAGATCAACCCTCAGGTGTCTCTCTACCTGCTGTCACAGGTGTTCCTAATCATCCACTACCAGCCACTTGTCCACTCTCTGGCTGATGTCATTCTGAACGGAGACCTGTCGGTGTTCACCGTGCAGACTGAGCAGAGCGCTCACAAGAGTTCAAGCAATGCTGGTCTTCGTCGCTTCGCCAAGCCTCCAGAAAGTCTGGAGCGTTCGCTGGAGATGAGTCGTCACCGTGGGAGAAAGAGGACCCAGAAAAGGCCCAACTACAAGAACGTgggtgaggaagaggaggaggagcgtGGATCAGAGGAAGGCCCGgaagaagagaaggaaaaggCTAAAGGTACAGAGGCTAGTTCAAAGGCCAGCAGGACAAGTGGGGACAAGGAAGaaatTGAGATGGTGGTGATGGAAAAATGTAGGATCTCTGATGTGTCCACGTTGACAGAACAGAACATTACAGACGAGGAGAAGAGCGCGGCTGCGGCACGATCTGAAGGACAGAAGAGCAGgCCCTTCCTGGACATGCTGTATAACGCACTGGACTGTGACACAGAGGATTACCAGGCTCTGTTTGTGCTTTGTCTCCTGTATGCCGTGTCTCACAGTAAAGGTATAAACCCAGAGCTCTTAGAAAGGATTCAGCTACCAGTGCCAAATCAAGAGAGGAGCTCTTACAGCCAGGTGTTGGTGGAAAGAGTGATCCGAATCATGAGCCAGGCTGCTCAGCcagatggaAAGGTGCGTCTTGCCACCTTGGAGTTAAGCTGTCTGCTTCTGAAACAGTCTGTACTGTCTGGCTctcaatgcattataaaagacaTTCATTTGGCCTGTTTGGAGGGGGCCCGAGAAGAGAGTCTTCACCTTCTGAGGCGATTTTATAAGGGGGAGGAAATTTTCCTGGACATGTTTGAGGATGAGTATAGGAGCATGATGaATAAGCCCCTAAACGTGGAGTATCTTATGATGGATGCATCCATTTTACTTCCTCCCACTGGCACCCCCCTCACCGGCATTGATTTTGTCAAGCGATTGCCCTGTGGAGATGTGGAGAGGACACGCAGGGCTATCCGTGTGTTCTTTATGCTGCGATCGCTGTCCTTACAGCTGCAGGGAGAACCAGAAACTCAACTTCCTCTCACTCGACCGGAAGATCTCATCAAGACTGATGATGTGCTTGACCTCAATAACAGTGATCTTATTGCTTGCATGGTGGTGAGTAAAGACGGGGTTCAAGCTCAACGCTTCCTGGCTGTTGATGTGTACCAGATGAGTCTTGTGGAACCAGATTCAAAACGTCTCGGCTGGGGAGTTGTCAAGTTTGCTGGCCTTTTACAGGACATGCAGGTTTCAGGTGTAGAAGACGACAGCAGGGCTCTAAACATCATCATACACAAGCCCACGTCGAACCCTCATGCCAAGCCTGTGCCCATCCTTCAGGCTAATTTCATTTTCGCAGACCATATTCGCTGCATCATTGCCAAACAGCGACTAGCCAAGGGTCGCATCCAGGCCAGACGCATGAAAATGCAGCGGATAGCAGCTTTATTGGATCTTCCTGTTCAGCCTTCCACAGAGGTGCTGGGTTTCAGCCAACCATCTGTTGCTTCGTCTCTGCCTTTTCGCTTCTATGACCAGTCCAGACGCGGCCCAGCCTTCGCCTCTGTAGATAAAGTTCCAGGCTTTGCAGTTGCTCACATTGCTCAGCACAACCCTTCATcggcctcctcctcctcctcaccctCTTCTAGTGGAGCAGCCGACTCCGTCACAGCCAGCAGCGCATCCACACACACCCTCGCACAGAGCCAAGCAGGACTCGCCCTGGCGCCAAGCCTCACGCCCGCACCCCAGCCCACCATCTCCCTCCTGTCAGACAATGATGCCGAAACGCTGAGCGTGGACTCCCTGACCCTGCTGCCCCCCGCCGATCCTCCTCGCCTGTGCTCCTTCAGCACCCAGTCCTCCGTCCAGGATGACTCCTCCGCAGACGGAGAAGAGACGACTACGACGGCGGCCGGCGGCCGAAAGGAAGATGACGACACGGGAGCGAGGGACGCACAGCCTCAAGATGACATTATTCCCATTATTCCAGAGGAAGATGAGCCATCTTCTGAGTCTGGTCCATTGCTAAGTTCAGAAACTGAGGAATTGCTTCAGATTCAGAGTGAGGAACCTGTGACTCAGTCCCAGACAGACTCTATAAGCGTCACGGCCGACCAAGAGGAGAACCCAGACCTGGAGGAGGAAACGGCGATAGACTGATGCATCTAAAATGTATCCAGAAAATTAGGGCCAGGTTACTAAAGCAAGAACGCATATTAATGTTGATTACTCAATGTGAGCATGACCGATTCTGGTTTTGCACAAGCTTTACTCAAGCTAGTTGGCACATGCTTTCGGCTTTAGAGATTCAGGCCCTCAattgtatctgtgtgtgtgttttccggCTGTGTCAACACAGCGGTTAGCAGTACTTCTTCTTATACCAAGACAATGATGCATTTCAAAGGAAAACGGCACTCTTAAAACAATGACATTATTGTCTGTCACCAGTGAGTGCTGCGTAAagcacagtgtttttttctgtgtcgTGCGCGAGTTGATCCAGACGTTTCTCCGCGTGCGTGATGTTTTGTGTTGGTGTGTGACTGTTGGGAGCGCGCGCGCGAATGGCTTTTATGATACCGAGCAGAAGGAGAGGAGAGGGAGTGTTTGTATGAATCTGTGTCTGAGTGGGTTAGTGGGGAAAGCCCGCTTGGTTTTTACCAGTCTTAACACTGAGGAATGTACAAAGACTTCTGGGTCTATCCAGCGGTGCTCTTTTGTGAAGGTGTATTTAGTTTGGGCTGAAAATTCGTTTTCACTTCATcgttttgggaaaaaaaaaaagcccttttGCGTCATTCTTTGAGATCGTAAGGAACCGCTATGAGCTTGAAGTAACCCGCTTTAATTCGGCGCTGCGTTTAAGATCATTCAACCCCATCAAGTCTTTAGTACAAAAAAACTCACTTCATATCagtcacgttttttttttttcttcatcaggtGAACACACCTGATGTCACAGAGTTTCATTCCTAAGCGTTTATGTCACTGCCGTACGCACACGCATCTGTTTTCTTTCGAAACGTTTCGAAATCTGGATGAGTTTGCCGGTTTCCCTTCATGTAGTTACTGCTTTAAATACCACTCTACCCTTTTTAAAGCTGAGGCAACTCGACCGCATTTTTAGGTGCGTTTTAATGTTCTTTAACACTTTAATACTCTAGGTCATCAAGAGCTTGTGCTGGACACACGTAATCAAAGCTGGGTGTGATGTATTTGTGCTTTCGTTTTACTTTGGTGTGCAATAACAGTGATTTAAGACCCATTTCTTTCACTTGCAGATTCAAGTAGTTGGAATACCGTCACTAATGGACTGAAACGGAACATTAATTTTGGGTTTATAGACTGCAGCACATAGAAGGGATCCACACACTGATGGCACAGATGCAAATGTGTGACAACCATGACTGGACGCTTTTCTTTCCAAAGAAAAGCACTCGTGTTGAAGCTTTATCGGTGGAGTTTGTACAATATTACCTTTAAAGCAATACGATTATTTCTGCGTACATCAGTATTTTGAGGTTAAATTCATTGTCGAGAAGGGGGGGGGCGTCCTAGTTTGTACACACTGTAAAGATTTGTTTTGATCTAATGTTATAATTTACCAACTGGAGCTAAGTCATGCAATAAATTATTCTGATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31312 lncRNA upstream 284825 18158171 ~ 18158546 (+) True G21076
TU31309 lncRNA upstream 323945 18116538 ~ 18119426 (+) True G21073
TU31280 lncRNA upstream 400750 18035539 ~ 18042621 (+) True G21049
XR_006250480.1 lncRNA downstream 87139 18574687 ~ 18579704 (+) False LOC122341661
TU31450 lncRNA downstream 88465 18576013 ~ 18744585 (+) True LOC122341661
XR_006248109.1 lncRNA downstream 164813 18652361 ~ 18654715 (+) True LOC122331012
TU31489 lncRNA downstream 215036 18702584 ~ 18703683 (+) True G21180
TU31495 lncRNA downstream 341138 18828686 ~ 18829253 (+) False LOC122341799
XM_043233959.1 mRNA upstream 5488 18426360 ~ 18437883 (+) False ciita
XM_043233960.1 mRNA upstream 5488 18427109 ~ 18437883 (+) True ciita
XM_043233961.1 mRNA upstream 5488 18430873 ~ 18437883 (+) False ciita
XM_043233962.1 mRNA upstream 18295 18405966 ~ 18425076 (+) False nubp1
XM_043235927.1 mRNA downstream 8046 18495594 ~ 18504038 (+) False pigq
XM_043235925.1 mRNA downstream 9602 18497150 ~ 18504038 (+) False pigq
XM_043235924.1 mRNA downstream 10190 18497738 ~ 18504038 (+) True pigq
XM_043235926.1 mRNA downstream 10194 18497742 ~ 18504038 (+) False pigq
XM_043235959.1 mRNA downstream 19607 18507155 ~ 18517671 (+) True rab40c
XR_006250035.1 other upstream 18295 18405966 ~ 18425076 (+) True nubp1
TU31277 other upstream 341439 18097645 ~ 18101932 (+) True si:ch211-157c3.4
TU31290 other upstream 367797 18074397 ~ 18075574 (+) False LOC122341796
TU31207 other upstream 536728 17904604 ~ 17906643 (+) True polr3k
TU31132 other upstream 719948 17719182 ~ 17723423 (+) True G20950
TU31393 other downstream 18582 18506130 ~ 18517665 (+) False G21124
TU31466 other downstream 194806 18682354 ~ 18687853 (+) True G21173
TU31491 other downstream 238413 18725961 ~ 18732098 (+) True G21182
TU31492 other downstream 238413 18725961 ~ 18729368 (+) False G21182
TU31493 other downstream 245617 18733165 ~ 18733765 (+) True G21183

Expression Profile