RNA id: XM_043231884.1


Basic Information

Item Value
RNA id XM_043231884.1
length 2591
RNA type mRNA
GC content 0.35
exon number 6
gene id LOC122334013
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 10689419 ~ 10693664 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAAAGAAGTAAAACGGCATAATGGAAACACTTAACAACTATCTAAGTAAATATAAGGGCTATGTTTTTGCAAAAGGTGAAACCACTGCGGAGTACATCGACTCTCTTCAGCATTTTGAGATTCGTGACAGTGATGTTTTTCTGGTGACATATCCCAAATCAGGCACAATATGGACACAGaacataataaatttaatttgtgaGGATGCCACAGACAAAACTCAATTTCCCAACAATCTTGAGAAGATGCCTTGGTTAGAGTACCGTGAAGGCCGAGCGGACTACTCTTTGCGATCGTCTCCACGGTTCTTTGCCACCCATCTCACACCCAGACTGATGCCACCAGGCCTTAGGGGGAAGAAAGGAAAGaTCGTGTATGTGGTCAGAAATCCAAAAGACAACGCCGTGTCATATTATCACTTCAGCAAAGTCTGGGCCAAGCTTGAGAAATACAAGAGCTTTGAAAACTTTCTGGAGCAGTATCTGACAGGAAAtgTTGGCGGTTCATCTTGGTTTGATCATATCCAAGAGTGGCACAGTGAAGGAGACCAGTACAACATACTTTTCCTGTCATATGAGGATATGGTCATGGATCTCAGGACAGCAGTGGAGAAAATCTGCAAGTTCTTGGGGAAAAATCTGGATGACGTTGCTATCACACATGTTGTGGAAAAGgcaactttcaaaaacatgaagaaGGACCCAAAGGCTAACTATGAATTTATTCCTAGAGATCTACTGCTGAAGCCCCAATTCATGCGCAAAGGCACAATAGGAGATTGGAAGAACACATTCACTGTagcacaaaatgaaatgtttgacCAGATCTtcaaagaaagaatgaaagatttTCCTCTGAACTTCATCTGGGACCTGGACAACTAAAAACATTCATGAGACAAAAGAACCAGCATTGCTTGCCCCTGGACATTAAACaccgttttttttaaacagtgttcTCCCACTACCCCCGCAATAATGTGACCACTGTGTGTACTTTATAATCTCCTATATAAGCCTTAAAATCCTGGCATTAAggatgacatttaaaaaaaactaacagttGGAAGACATGATTAAGCAAATTCTGCCCAAGACATCAAGTTGACATCATCAGAAAAGAAGTGCAATTCTAGAGCAGAAACAAATGATCagattttgattaaagattCCAGATTCTGTCACTCCAACCAGGACAATTCTCAGTTTAGGACAGTCCGAAAGACAAATGCCTTGTTCTGTGGATAAAAGGATAGACATGACAAAAGGCTAAATTTAagatttgtgtatttaaattgcatataaaaatgtcaataatttcAGAGGCAGTTTTAGCATAAAGTAATAAACTTAATGCATAATTTTCTGCCATAAATATTGTGgcatagtttattattattattattaacagtttacatctatttgattttttttaaagcgatatttcaccccaaaatgaaaattttgacATCACTCccaaacctgtaaaacctttgttcatcctctgatttatttttttttatattttggatatcGTGACTATCCCATTGTGACTGACCCATTCACTGCCAagtaaagtatgaaaaacacaTGAATGTTACGAAGTGACAAGAATAGTTAGAAAGTTTATTCAATAATTCGTAtcctctgtgtgtctctgcatCACAGTAGTGCCACTTTGAAGAATATCCACTGAACGCAAATGCTGTTCTGTCAGCGACGCCACAAgtatatgctgtttttgttcaaatcaaagcagaaGTACACATAGAAAACATACTGACAGTTGAAAGAGTGAAGGAAGTTTGCATCTAACAGATATTCCCTGAAATAGTGTTATGGTGATTGTGGTAATGGATTATGGAATGgagtctgtatttttattttctttgtgtaccAAAAGTATtttcgtagcttcataacattcagattgaaacaaaaaagatgtagtccatctttttttctgacaatgtttttcatacttttctggaccttgacagtttattttacttgacaGTCAATGGGACAATCACATGCCTCCCGGTTTTTATCCTAaaaaagcttttacgggtttaaaacgacatgggggtaagagCATGcctttaaataatcaaaattttaaaatacatttattcaaacagCTGAGAATGACAATTATTTTGTTCAATTAATATTGGAACAGTACATAGTTGTGTAAAGgctatattcaattatttaaaacatgtaagATTTATAATTGATGATAAATGTCTGAACCTGGTTattgtaaattatgtaaatgatgGAAATTGTATATGTAATTCATATGCATAAATCCTAAATTTAGGTTATctccatatatttatttatttagcatcagGTCTTATTTTACAATCATGACTGTACACTACATGATAACATGGAAGGGTacaggcaaaataaatgtatacaaggAAGCATAAATAAGCATAAGCAAATAAGtaagcataaataatattttagcatatgtcattttatttaccaTAAACTGTTTAAGTTAAATGACAATATTATGCTGCTTGGTCTGAACTGGAAGCAGTAAAGACAGTAATAAAAAGCCTGTATGAATATCA

Function

GO:

id name namespace
GO:0008146 sulfotransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27991 lncRNA downstream 10839 10677457 ~ 10678580 (-) True G18771
TU27965 lncRNA downstream 110279 10574167 ~ 10579140 (-) True G18745
TU27935 lncRNA downstream 287208 10401833 ~ 10402211 (-) True G18717
TU27859 lncRNA downstream 649480 9993833 ~ 10039939 (-) False rbfox1
TU27812 lncRNA downstream 780802 9901531 ~ 9908617 (-) True G18638
TU28324 lncRNA upstream 73636 10767300 ~ 10769398 (-) True G19019
TU28458 lncRNA upstream 640092 11333756 ~ 11335800 (-) False G19108
TU28460 lncRNA upstream 641319 11334983 ~ 11335800 (-) True G19108
TU28461 lncRNA upstream 641319 11334983 ~ 11335800 (-) False G19108
TU28475 lncRNA upstream 716671 11410335 ~ 11410716 (-) True G19117
XM_043231876.1 mRNA downstream 1888 10679014 ~ 10687531 (-) True LOC122334005
XM_043234872.1 mRNA downstream 63928 10618431 ~ 10625491 (-) True cyth4a
XM_043235303.1 mRNA downstream 293080 10394314 ~ 10396339 (-) False eef2kmt
XM_043235939.1 mRNA downstream 300346 10385450 ~ 10389073 (-) True c3h16orf89
XM_043229154.1 mRNA downstream 317216 10370056 ~ 10372203 (-) True si:ch211-76l23.4
XM_043231907.1 mRNA upstream 5329 10698993 ~ 10702733 (-) True apol
XM_043235522.1 mRNA upstream 85246 10778910 ~ 10782591 (-) True rpl3
XM_043235313.1 mRNA upstream 89568 10783232 ~ 10792792 (-) False slc25a39
XM_043235312.1 mRNA upstream 89568 10783232 ~ 10792792 (-) False slc25a39
XM_043235311.1 mRNA upstream 89568 10783232 ~ 10792792 (-) True slc25a39
XR_006250486.1 other downstream 293078 10394314 ~ 10396341 (-) True eef2kmt
TU27537 other downstream 1226514 9426572 ~ 9462905 (-) True G18433
TU27085 other downstream 2290591 8309552 ~ 8398828 (-) True fmc1
TU27088 other downstream 2378070 8309552 ~ 8311349 (-) False fmc1
XR_006250544.1 other downstream 2470364 8218902 ~ 8219055 (-) True LOC122342198
XR_006250541.1 other upstream 85437 10779101 ~ 10779235 (-) True LOC122342195
XR_006250542.1 other upstream 86438 10780102 ~ 10780196 (-) True LOC122342196
XR_006248663.1 other upstream 318272 11011936 ~ 11064583 (-) False lrrc4ba
XR_006250462.1 other upstream 1000608 11694272 ~ 11714719 (-) False map3k3
TU28831 other upstream 1019156 11712820 ~ 11727975 (-) False limd2

Expression Profile