RNA id: XM_043232050.1


Basic Information

Item Value
RNA id XM_043232050.1
length 7217
RNA type mRNA
GC content 0.39
exon number 10
gene id crhr1
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 21637743 ~ 21734127 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTGCCAAGGCTGGATAAGAAGAAGAGCAAGCTGCATTACCACATTGCAGTCATCATAAACTACCTGGGACACTGTATCTCTCTGGGAGCCCTGCTGGTCGCCTTCATCCTCTTCATGAGGCTCAGGAGTATCCGGTGTCTGAGAAATATCATCCACTGGAACCTGATTACAGCATTTATCCTGCGAAATGCCACCTGGTTCGTGGTGCAGCTCACCATGAACCCAGAGGTGCATGAGAGCAATGTGATCTGGTGCAGGCTGGTCACAGCAGCGTATAATTATTTCCATGTGACCAACTTCTTCTGGATGTTTGGAGAGGGCTGCTATCTGCACACAGCCATAGTACTGACATACTCCACCGACAAACTGAGGAAATGGATGTTCATCTGTATAGGCTGGTGTATTCCATTCCCCATCATCGTCGCTTGGGCCATTGGCAAGCTGTACTATGACAATGAAAAGTGCTGGTTTGGGAAACGGGCCGGCATTTACACTGATTATATTTACCAGGGTCCCATGATCCTGGTCCTGCTGATTAACTTCATTTTTCTCTTCAACATTGTGAGGATCCTGATGACTAAACTGAGGGCCTCCACCACCTCAGAGACCATTCAGTACAGGAAAGCAGTGAAGGCCACACTGGTTCTTCTGCCGCTGCTGGGCATCACATACATGCTGTTCTTCGTCAACCCAGGCGAGGATGAGATCTCACAGATTGTCTTCATTTACTTCAACTCTTTCCTAGAGTCCTTTCAGGGCTTTTTTGTGTCAGTGTTCTACTGCTTTTTGAACAGTGAGGTACGCTCAGCCGTTCGTAAGCGGTGGCATCGCTGGCAGGATAAGCACTCCATTCGGGCGCGGGTGGCACGGGCCATGTCTATACCCACCTCTCCAACACGGGTCAGTTTCCACAGCATCAAGCAGTCGTCTGCCGTCTGACCAGAACAGAAGTGAAGCATCTACCCCCGTTTCTTCTGCTCCCGCTCTTTCCGTCCTCTAACCATCCACATCCTCTGCAAAACCCAGGGATAACAGCTATGGGCCAAACAGGGTATGATCCTCAGCTGAAACATAGATGAAGGCTGGAAATGTACAGAGATAACGAGGTCCACCTGCCAAACACAGAGGGGAAAAACTGCTTCAGAAACAGATTAGAGCATCGGTGGTCTCAGACAGCAATGGGAGACCGTGGGAGgaacctgacacacacacacacacaaagaaaggtTGATAAATACTGGCATAGTGTATTTATTCAATAGACAGAGTTATATATGTCACATCCTGTTCTTGAGTTTTCTTTCGTCGGAGAGCTCAGATTATTCCTAACTATCAGAGTAAGATGctatataatatacactacATGGCCAAAAGTATTGCGAGTGCTAGCCATACATGTGTCTGAATGGGATCAAATCCATATTCCAACATCTACTGGAAACCTTCCCAGAAGAGTGGAAGCTGTTAAGGAGGATAAACTCCTTATTAATGCCAATAGTTTTAGAATTAATTGCTcagaaatcacatttttgtGCATCCACAAACTTTTGGCCATATAGTGCAAATAGTCTTAggagttttaaaacaaaataacataatcagagaagaagaaaaaaagaagttttCCAATTGGAAAGCGAACTGTATCTTTGACAGATCTTAATGTGAActttcattattgttattgaATCGTTTGACTGGATACATTGGGGACAAATGTGTGGCGTTTTCTCCGAGATGTTCAGCTTGTgacccttattttttttttctcaccctTCACTCGCTGCTCTTCATTGCCCACGTTGTTGCAGCTAGTAATAGTTTCTATGAGCAAACTCGTTGAACGTGGACACGTTTCGCACTGATATGATGAGTACATCAGTCGCCGTGTATATCATGCACTGCGAAAATTGTAAACAGTTTTTACAAAGATGAAAGGTATGTGTTAATGCTCTCTAAGCCGGTTCGCATCCTGGGACTCAAGGATATGTCTAAACCCTGGGGAAAAAGAGGAAGGAAGCTCACAGGAAAGGGAACAACATCATGAAAGACTCTCATGCCTGCTAAGGTAGAAGACGGTACGCTCCGATGCTAAACACATAACACAATCTTTTAAATAAGGGGTTTATCACAGAACAAAGAAAGGATTTTGATTTTATCCTGCATTTGGAGCCTCAGCCAAGCGATTGAATGTATTTCAATTAAGCACTCCAGCTCTCCTGTTCATATAAATTCCCACTTATCTAGCCGTTTTACGAGATGATCATAGTACAAAATACTTGAGAAGTTGGATTCTGAAGACTCTTTCAAAAAAGTCTAATTCTAATCACGCGTGACTGGAAGCTGTTGGTGGTTTTGTTGCCCAAGAGCCTTATacggatagctcacccaaaaatgacaattcggtcatcatttactcagcctcatgttTATCTAGCCGCGTGACTGCGTTTCATTCAGCAAACAAGGAAGACGTTTTAAAGAATGTACACCACCCTTCAGAAGTTTGagtcattaaatttttttaactgcataaaaaaatgcCAACACAGTGTTATGACCAATTTGTACGTATTTAACGAGGTGGCTTATTTGTATAAATTCGTACAACCTCACTTTTGTCTAGTGACACAGTGACGGTTTAATGGTGTGGTGAGGTGTAGGTGCGGGCCACTCGTCGAAAGTATATACgatttcatgaaaaatgtatgcatttgtatgATTGAGGTCATACAAATTAGCCAACTCGTTAAACATGTTCATATGAATTGCTGTGCGATCGGGATGAGTATACACTTGAGGACTGCAACAAATCggataaatgtataaatgagtTGAACTGAATCGGTTTGATTTGTGAACTGCTCTTGTTAACTTGGTCATCTGATTCAATGAAAAGACTCTTTATGATCTGTTCACAAATGTTCTGCTACGTTCACAATTTGTTCGGAAAATCATggggttgagtaaatgatgacagttttcatttagaGTGAGCAAtcctgttttaaaatgtcagtttttttatatgaagCAAGGTGcatttcaatatttacattGCTACTAGTGTGGGCAGAAATTTATGGACAGCAGGGAAGCTACTGTGTCATTTGTGGaccatatatataattttttttctctagttTCTCTGGACAGCTGTTCTGTGTGGaagtacatttgaaaaaatagaTGAATTGTGCACTTTTGTGTTTTCTAGGACCAGCTTCTTCAATTCAAATCCCAACAGAATTGGGCTCAGCTAAATCTGCTCCTATATCATTACAGTCAAGAGAGATCTGCATGCCTCACACAGGGCCATTTAACATCCATCCATGTGTTATAACCATCGTCGAGATGAGCCGCCAATGACCGAGTCCTGTGACCGCTCACTGCTGACTCAGCACAGTAAAGCAGATTTAGCTTTTGTGCTCATACATCCAATCAATCACATCTGATAGGGAGAGCaaggttgtaaaaaaaaaaaaaaaactgactcaGGACCTTCATCTATGCCTCTGTGCTCTTCTGACCTTCCTGACGTACTTGTGTGAGAATCATTTGTAAAGGCTTCAGCAGATTCCACATTCAGTCATGCTTGTCGTGTACGTGTCCCGTAGCACCATATATACGAGTTAGACATCTAGTTGTATATATATAGGATGACTAGCATTGTGAAGTTTGCTATCTACCATATAGCAGTGTGTGTATCTGACAAACTAAGGACCAAGCTTGTGTCACTGCTGCTAGTAAACTGAAAAACAAGGTTCGTTTTAATGTCGCTACTAAGTTTAGGACTaaggctttgtttttgtttttttaatttttaggctGTGCAAAGTAATTTTGCAGTGAAATCTGATCTGATTGTTCTGACATTGTAGTAAATATCAGGATGCCAGCAACTGAGAGCTGGAAAGAGCGTACAAAATGTCATGACATCTATCCACTCTGCTGAACTCACAAGGCGCATAAGGAAACATGATTTTAGCTATTCATGCATATTTTGTGCACAAAACTGCCTTTTTGTGCACTCTTCGCTAATTGAGGAAAAGGTGAGATAGTATATTCTCAGTAAGATATTATTCAGCAAGATGCAGTaaagatgcaatttttttaaaaaacatattacatagctgataaaaaaaaatgctgttcctttGCAGCCCCTGTTCATCAATGAGCTcagaattgatttatttttttacagtttttaacatCTTCCAAAAACGTTAAAAATAATCtcactgacctcaaactttagAATAGTAGATTTTACATATTGTAGCACCccaaataatgattaaaatatctaaaatcagatttttaaatgatttaaaaatgttgtctcTGTCTGTGGTTACTTATTGTATAAAGCCCATAAAATGGcccatcaaaaaaaaagcacaatagattagtgtacaaaaaaatatcagGAGATAATGTACAGTCAAACGGTCATTAAGGGGTTTATTTTGAGACAGTGACCATCTGATTATACATTGTTCCACTTATTTGGCCGCTGCTTATCATTTAAATGTGAGATggatattgattttatttgaaatgatttgattATGTCAGAAGAAAGAGGGCGCAGAGATTTTCAGAGACATGTTTAGTCAGTCTGGCTGCGATTGACCAATCAGATTCATGTATTCCAGCAAACCTTGTAATGAAAATAGAGAAACTAAGAATAGCTGGATGCTGAATAGCAAAACTCTTCAGACAGTGATGAATGTGATGTGGACAGAAATGAGAGCGGCAGAGGTTACTATTTATGTCGAACAGATCTGTTTGCTGGTGCGTGTGGAATCGCGTCACCTGAGGGATCTGATTTAGCTTCATGGGCCTGAAGACTTTCACAGCACTGCTCAGACACACTCCATCAGCCTTTCCCTCACTATTTATAGCACTTTAATAGTAAACAGCTCAGATGTTCACTTCGTATACAAACCTGTGGGGCTACTAATGAAAAGGCCATTTAGAGACAGAGGTGCAGTCTATACAACATtataacaatattacaatatattaccCTCCTGAAGAGCTAAATTAGTGACGTATCTAGTGAATTAGGTGTTAGTTGGAACCTTATTCTAGTGGAACCATGTCTAATCGTACTTATACCTTTCTTAGGCCACATGAAACATAATCCAGTGtcatgtatattatttacaaatcatTAATTAATCAGTTCCGGAAAGTAGCGCCACGATTTTACTACATTGATTGGCATTAGATGCAAAtccactcttaaaaataaaggttcctcATGGGCATCTATGAGAAACATATAACTTGCACAGAACCTTTCaatttcacaaaaggttctttataagTGTTCACCAGATAATTGAAATGTTCATCACGTTAAGAAAAACTGTTTCTTTTAGGAACTGTTCAATGAAAGGATCTTCCGGGCACCCAAAATTGTTCTTTACGGGCTAATGGTTTAAAACAGACCTTTATGTTTagatatatctatctatcaggtTGTTTTTTGAAGGTGAAGTGTGTCCTCTAAACAGGTCCCATTTTAATACACAACTGTGTGTAAGCCATTCGCAGTTTTataaggagaaaaaaacctgCTATGGCTCTGTGAACATTGCTCTGTTTGCTTGAGCGAATTTGATTTCACGAATGAAAGTGCGAGTACCTGGTGTGCTGTTAGTTTTCTAGATGACCAGATTCTTGATTTTCTCTCAgcaagcgaaaaaaaaaaaaaaaaagagcgaaaAACCCTGTAGACTTAAATTAAAGGAGCTACCTGAGCCGTATCTCTTTGGGCTTGGACCAGTAAGCGACAATCTAGCAACCATCCAAGACTCCCTGGCGACCACatcaaggaatagttcacccaattcatttaaacagattCGGAGAAATTttacattacatcacttgctcaccttAGTCACACTTCAGCTTTGAAACACCAATGGTAATACTTATTTGTGGTTTTTGCGTGTAATAGTTTGATTTGTATCACTTTTCCCTTTCAACTTTTGTCTGTGACCTCCAGAGAGCAGTCAGCATTCCAAAGCTATGAAGCATTCTCCATGCCCTGCGACATATGCGATATTCCAAAGTACGGCATACACGGTGTGCTCCTCCAACGTGCCTCAGAGAAGGCCTAAAAACACAGTCTCTGCTCAAGGCTTATCATTTCATCTTTGCACATAACTCAGATACCTTCTTCTGTTCAAAGACAAAAATGTCCAGACTCACTATTCTTGGTAAGGTCAGTGTCTGTATCAGATTTGTTGGCCGCCATCCTTCAGCCGGAGTTGTACGTTTTCAGTATTAGTTCAGTCATTTCTAGTAGTGTTGTCATTTCTGTGTTGGTGAGCCCTTGCTTATTTTTCTATATCTGTGAGAAGCAACACTGGTGTCCGTGTTcgtttctgtttctttattcactgaaaatcattttctttgtcAATGTTTTAGTCTTGTTTACCAGTAAAGTATTTAATGCGTTTCAAACACGAatttgcttgaaaaaaaaaaaactattaaaaagaataGTATTTCGTTTGAATAGGTACATTTATCTTGCTTTAAAgatgtttaagtttttttactggaaaacaacacaaagatACTGATTCAGAAAAGTATGTTTGCAaagtttattttctctttttttagagGTTGTGAAGGAGTTCTTCCAAAGTTGTGAAATGTACAGAAGGTCCGAACAAGTACGAGCTGTGCAGCTGTATTTGTAACCACGATGTCAATACGTGATCTTTTTTGGGTATTTCTGTTGTGTTTAGTCACTGATGTGAAAGTGTACaaagaaaaatttatttatttatacatgtatggcacagaaaaaaatatctatatatttatctcACTATTTAAATAGGTCAGAAACCACGAGCCCACACGTGACTCATATCAATATATCCATAACATTAATGTCCAGAATGTGTGAAGACGACGTAATCTTGTATGTCCTGCTTTTTGTGGTTCTGTGAGACAATCTTTGCTatcatttctgtcattttctgcAGTGCTTCAAGAACATtctatttattacttttttgctCCTCTGTTTGTTTATGACTGATTTGGTGTTTGAGAGAATTTAGGAACTGTAcagaaatttatattaaatcagCTACACAAAGAGTAAAGTCATATGTTGAAGGCATATAGTACTGTGCTGATCAAGATGtgcattaaattgttttctttttttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32956 lncRNA upstream 56846 21636123 ~ 21636570 (+) True G22198
TU32955 lncRNA upstream 57337 21635744 ~ 21636079 (+) True G22197
TU32816 lncRNA upstream 199918 21345129 ~ 21493498 (+) True G22094
TU32803 lncRNA upstream 310292 21381808 ~ 21383124 (+) True G22084
XR_006249615.1 lncRNA upstream 401481 21290414 ~ 21291935 (+) False LOC122337857
TU32959 lncRNA downstream 11 21734138 ~ 21734422 (+) True G22201
TU33101 lncRNA downstream 243491 21977618 ~ 21979015 (+) False wnk4b
XR_006250495.1 lncRNA downstream 301755 22035882 ~ 22089931 (+) True LOC122341843
TU33104 lncRNA downstream 301790 22035917 ~ 22089931 (+) False LOC122341843
TU33106 lncRNA downstream 301790 22035917 ~ 22064100 (+) False LOC122341843
XM_043234699.1 mRNA upstream 242707 21447171 ~ 21450709 (+) True LOC122341350
XM_043233991.1 mRNA upstream 248675 21441922 ~ 21444741 (+) True LOC122340007
XM_043234698.1 mRNA upstream 255461 21429682 ~ 21437955 (+) True LOC122341349
XM_043233803.1 mRNA upstream 290298 21389147 ~ 21403118 (+) True LOC122337825
XM_043233759.1 mRNA upstream 327262 21363439 ~ 21366154 (+) True LOC122337169
XM_043235446.1 mRNA downstream 49329 21783456 ~ 21795403 (+) True cdc27
XM_043235447.1 mRNA downstream 49329 21783456 ~ 21795403 (+) False cdc27
XM_043235271.1 mRNA downstream 62893 21797020 ~ 21842872 (+) False kansl1b
XM_043235273.1 mRNA downstream 63113 21797240 ~ 21842872 (+) False kansl1b
XM_043235270.1 mRNA downstream 63119 21797246 ~ 21842872 (+) True kansl1b
TU32806 other upstream 279130 21295702 ~ 21414286 (+) True G22087
unassigned_transcript_291 other upstream 1379085 20314260 ~ 20314331 (+) True trnac-gca_3
TU32181 other upstream 1505333 20187528 ~ 20188083 (+) False eftud2
TU32173 other upstream 1506218 20185567 ~ 20187198 (+) False eftud2
TU32169 other upstream 1585580 20106846 ~ 20107836 (+) False LOC122341546
TU33098 other downstream 241125 21975252 ~ 21976665 (+) True G22301
XR_006248300.1 other downstream 242382 21976509 ~ 22025911 (+) False wnk4b
TU33161 other downstream 794862 22528989 ~ 22530060 (+) True G22344
TU33136 other downstream 812031 22546158 ~ 22547208 (+) True G22329
TU33451 other downstream 1171250 22905377 ~ 22906695 (+) False LOC122341356

Expression Profile